Biochemical and cellular characterization of the plant ortholog of PYM, a protein that interacts with the exon junction complex core proteins Mago and Y14

Planta

Volumn 225, Issue 3, 2007, Pages 625-639

  Park, Nam Il ^a   Muench, Douglas G ^a  

^a UNIVERSITY OF CALGARY   (Canada)

Author keywords

Arabidopsis; Exon junction complex; Mago Y14; Nonsense mediated decay; Post transcriptional regulation; PYM

Indexed keywords

ARABIDOPSIS PROTEIN; DROSOPHILA PROTEIN; GLUTATHIONE TRANSFERASE; HYBRID PROTEIN; MAGO PROTEIN, DROSOPHILA; NUCLEAR PROTEIN; PYM PROTEIN, DROSOPHILA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; CELL NUCLEUS; CHEMISTRY; CYTOSOL; DIMERIZATION; FLUORESCENCE MICROSCOPY; GENETICS; HUMAN; IMMUNOBLOTTING; IMMUNOPRECIPITATION; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; SEQUENCE ALIGNMENT; TRANSGENIC PLANT;

AMINO ACID SEQUENCE; ANIMALS; ARABIDOPSIS PROTEINS; CELL NUCLEUS; CYTOSOL; DIMERIZATION; DROSOPHILA PROTEINS; GLUTATHIONE TRANSFERASE; HUMANS; IMMUNOBLOTTING; IMMUNOPRECIPITATION; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PLANTS, GENETICALLY MODIFIED; PROTEIN BINDING; RECOMBINANT FUSION PROTEINS; RNA-BINDING PROTEINS; SEQUENCE ALIGNMENT;

ANIMALIA; ARABIDOPSIS; MAGO;

EID: 33846820435     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-006-0385-y     Document Type: Article

References (44)

1. Bono F, Ebert J, Unterholzner L, Guttler T, Izaurralde E, Conti E (2004) Molecular insights into the interaction of PYM with the Mago-Y14 core of the exon junction complex. EMBO Rep 5:304-310
2. Boswell RE, Prout ME, Steichen JC (1991) Mutations in a newly identified Drosophila melanogaster gene, mago nashi, disrupt germ cell formation and result in the formation of mirror-image symmetrical double abdomen embryos. Development 113:373-384
3. Chuong SD, Mullen RT, Muench DG (2005) The peroxisomal multifunctional protein interacts with cortical microtubules in plant cells. BMC Cell Biol 6:40
4. Clough S, Bent A (1998) Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16:735-743
5. Conti E, Izaurralde E (2005) Nonsense-mediated mRNA decay: molecular insights and mechanistic variations across species. Curr Opin Cell Biol 17:316-325
6. Dickey LF, Nguyen TT, Allen GC, Thompson WF (1994) Light modulation of ferredoxin mRNA abundance requires an open reading frame. Plant Cell 6:1171-1176
7. Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol 3:195-205
8. Forler D, Kocher T, Rode M, Gentzel M, Izaurralde E, Wilm M (2003) An efficient protein complex purification method for functional proteomics in higher eukaryotes. Nat Biotechnol 21:89-92
9. Fribourg S, Gatfield D, Izaurralde E, Conti E (2003) A novel mode of RBD-protein recognition in the Y14-Mago complex. Nat Struct Biol 10:433-439
10. Gehring NH, Kunz JB, Neu-Yilik G, Breit S, Viegas MH, Hentze MW, Kulozik AE (2005) Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements. Mol Cell 20:65-75
11. Gonzalez CI, Wang W, Peltz SW (2001) Nonsense-mediated mRNA decay in Saccharomyces cerevisiae: a quality control mechanism that degrades transcripts harboring premature termination codons. Cold Spring Harb Symp Quant Biol 66:321-328
12. Hachet O, Ephrussi A (2001) Drosophila Y14 shuttles to the posterior of the oocyte and is required for oskar mRNA transport. Curr Biol 11:1666-1674
13. Hachet O, Ephrussi A (2004) Splicing of oskar RNA in the nucleus is coupled to its cytoplasmic localization. Nature 428:959-963
14. van Hoof A, Green PJ (1996) Premature nonsense codons decrease the stability of phytohemagglutinin mRNA in a position-dependent manner. Plant J 10:415-424
15. Jofuku KD, Schipper RD, Goldberg RB (1989) A frameshift mutation prevents Kunitz trypsin inhibitor mRNA accumulation in soybean embryos. Plant Cell 1:567
16. Johnson MA, von Besser K, Zhou Q, Smith E, Aux G, Patton D, Levin JZ, Preuss D (2004) Arabidopsis hapless mutations define essential gametophytic functions. Genetics 168:971-982
17. Kataoka N, Yong J, Kim VN, Velazquez F, Perkinson RA, Wang F, Dreyfuss G (2000) Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm. Mol Cell 6:673-682
18. Lau CK, Diem MD, Dreyfuss G, Van Duyne GD (2003) Structure of the Y14-Magoh core of the exon junction complex. Curr Biol 13:933-941
19. Le Hir H, Izaurralde E, Maquat LE, Moore MJ (2000a) The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions. Embo J 19:6860-6869
20. Le Hir H, Moore MJ, Maquat LE (2000b) Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions. Genes Dev 14:1098-1108
21. Lejeune F, Maquat LE (2005) Mechanistic links between nonsense-mediated mRNA decay and pre-mRNA splicing in mammalian cells. Curr Opin Cell Biol 17:309-315
22. Lorkovic ZJ, Hilscher J, Barta A (2004) Use of fluorescent protein tags to study nuclear organization of the spliceosomal machinery in transiently transformed living plant cells. Mol Biol Cell 15:3233-3243
23. Lorkovic ZJ, Barta A (2004) Compartmentalization of the splicing machinery in plant cell nuclei. Trends Plant Sci 9:565-568
24. McCartney AW, Greenwood JS, Fabian MR, White KA, Mullen RT (2005) Localization of the tomato bushy stunt virus replication protein p33 reveals a peroxisome-to-endoplasmic reticulum sorting pathway. Plant Cell 17:3513-3531
25. Mohr SE, Dillon ST, Boswell RE (2001) The RNA-binding protein Tsunagi interacts with Mago nashi to establish polarity and localize oskar mRNA during Drosophila oogenesis. Genes Dev 15:2886-2899
26. Muench DG, Park NI (2006) Messages on the move: the role of the cytoskeleton in mRNA localization and translation in plant cells. Can J Bot 84:572-580
27. Newmark PA, Boswell RE (1994) The mago nashi locus encodes an essential product required for germ plasm assembly in Drosophila. Development 120:1303-1313
28. Nott A, Le Hir H, Moore MJ (2004) Splicing enhances translation in mammalian cells: an additional function of the exon junction complex. Genes Dev 18:210-222
29. Orphanides G, Reinberg D (2002) A unified theory of gene expression. Cell 108:439-451
30. Palacios IM, Gatfield D, St Johnston D, Izaurralde E (2004) An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay. Nature 427:753-757
31. Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JW, Shaw PJ (2005) Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Mol Biol Cell 16:260-269
32. Petracek ME, Nuygen T, Thompson WF, Dickey LF (2000) Premature termination codons destabilize ferredoxin-1 mRNA when ferredoxin-1 is translated. Plant J 21:563-569
33. Rigaut G, Shevchenko A, Rutz B, Wilm M, Mann M, Seraphin B (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat Biotechnol 17:1030-1032
34. Rohila JS, Chen M, Cerny R, Fromm ME (2004) Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J 38:172-181
35. Scott A, Wyatt S, Tsou PL, Robertson D, Allen NS (1999) Model system for plant cell biology: GFP imaging in living onion epidermal cells. Biotechniques 26:1125, 1128-1132
36. Seki M, Carninci P, Nishiyama Y, Hayashizaki Y, Shinozaki K (1998) High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated CAP trapper. Plant J 15:707-720
37. Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, Sakurai T, Nakajima M, Enju A, Akiyama K, Oono Y, Muramatsu M, Hayashizaki Y, Kawai J, Carninci P, Itoh M, Ishii Y, Arakawa T, Shibata K, Shinagawa A, Shinozaki K (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science 296:141-145
38. Shi H, Xu RM (2003) Crystal structure of the Drosophila Mago nashi-Y14 complex. Genes Dev 17:971-976
39. Strom AC, Weis K (2001) Importin-beta-like nuclear transport receptors. Genome Biol 2: REVIEWS3008
40. Swidzinski J, Zaplachinski S, Chuong SDX, Wong J, Muench DG (2001) Molecular characterization and expression analysis of a highly conserved rice mago nashi homolog. Genome 44:394-400
41. Tange TO, Shibuya T, Jurica MS, Moore MJ (2005) Biochemical analysis of the EJC reveals two new factors and a stable tetrameric protein core. Rna 11:1869-1883
42. Voelker TA, Moreno J, Chrispeels MJ (1990) Expression analysis of a pseudogene in transgenic tobacco: a frameshift mutation prevents mRNA accumulation. Plant Cell 2:255-261
43. Zhao X-F, Nowak N, Shows T, Aplan P (2000) MAGOH interacts with a novel RNA-binding protein. Genomics 63:145-148
44. Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136:2621-2632