메뉴 건너뛰기




Volumn 88, Issue 2, 2007, Pages 458-469

Cross-genotype characterization of genetic diversity and molecular adaptation in hepatitis C virus envelope glycoprotein genes

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN E1; GLYCOPROTEIN E2; HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN; UNCLASSIFIED DRUG; VIRUS GLYCOPROTEIN;

EID: 33846813697     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.82357-0     Document Type: Article
Times cited : (25)

References (75)
  • 1
    • 0027068086 scopus 로고
    • The natural history of community-acquired hepatitis C in the United States
    • & other authors The Sentinel Counties Chronic non-A, non-B Hepatitis Study Team
    • Alter, M. J., Margolis, H. S., Krawczynski, K., Judson, F. N., Mares, A., Alexander, W. J., Hu, P. Y., Miller, J. K., Gerber, M. A. & other authors (1992). The natural history of community-acquired hepatitis C in the United States. The Sentinel Counties Chronic non-A, non-B Hepatitis Study Team. N Engl J Med 327, 1899-1905.
    • (1992) N Engl J Med , vol.327 , pp. 1899-1905
    • Alter, M.J.1    Margolis, H.S.2    Krawczynski, K.3    Judson, F.N.4    Mares, A.5    Alexander, W.J.6    Hu, P.Y.7    Miller, J.K.8    Gerber, M.A.9
  • 2
    • 0034897709 scopus 로고    scopus 로고
    • Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution
    • Anisimova, M., Bielawski, J. P. & Yang, Z. (2001). Accuracy and power of the likelihood ratio test in detecting adaptive molecular evolution. Mol Biol Evol 8, 1585-1592.
    • (2001) Mol Biol Evol , vol.8 , pp. 1585-1592
    • Anisimova, M.1    Bielawski, J.P.2    Yang, Z.3
  • 3
    • 0042208362 scopus 로고    scopus 로고
    • Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites
    • Anisimove, M., Nielsen, R. & Yang, Z. (2003). Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites. Genetics 164, 1229-1236.
    • (2003) Genetics , vol.164 , pp. 1229-1236
    • Anisimove, M.1    Nielsen, R.2    Yang, Z.3
  • 4
    • 20744437263 scopus 로고    scopus 로고
    • An interplay between hypervariable region 1 of the hepatitis C virus E2 glycoprotein, the scavenger receptor BI, and high-density lipoprotein promotes both enhancement of infection and protection against neutralizing antibodies
    • Bartosch, B., Verney, G., Dreux, M., Donot, P., Morice, Y., Penin, F., Pawlotsky, J. M., Lavillette, D. & Cosset, F. L. (2005). An interplay between hypervariable region 1 of the hepatitis C virus E2 glycoprotein, the scavenger receptor BI, and high-density lipoprotein promotes both enhancement of infection and protection against neutralizing antibodies. J Virol 79, 8217-8229.
    • (2005) J Virol , vol.79 , pp. 8217-8229
    • Bartosch, B.1    Verney, G.2    Dreux, M.3    Donot, P.4    Morice, Y.5    Penin, F.6    Pawlotsky, J.M.7    Lavillette, D.8    Cosset, F.L.9
  • 5
    • 2442671600 scopus 로고    scopus 로고
    • Increased sensitivity to CD4 binding site-directed neutralization following in vitro propagation on primary lymphocytes of a neutralization-resistant human immunodeficiency virus IIIB strain isolated from an accidentally infected laboratory worker
    • Beaumont, T., Quakkelaar, E., van Nuenen, A., Pantophlet, R. & Schuitemaker, H. (2004). Increased sensitivity to CD4 binding site-directed neutralization following in vitro propagation on primary lymphocytes of a neutralization-resistant human immunodeficiency virus IIIB strain isolated from an accidentally infected laboratory worker. J Virol 78, 5651-5657.
    • (2004) J Virol , vol.78 , pp. 5651-5657
    • Beaumont, T.1    Quakkelaar, E.2    van Nuenen, A.3    Pantophlet, R.4    Schuitemaker, H.5
  • 7
    • 0028945033 scopus 로고
    • Genetic heterogeneity of hepatitis C virus: Quasispecies and genotypes
    • Bukh, J., Miller, R. H. & Purcell, R. H. (1995). Genetic heterogeneity of hepatitis C virus: quasispecies and genotypes. Semin Liver Dis 15, 41-63.
    • (1995) Semin Liver Dis , vol.15 , pp. 41-63
    • Bukh, J.1    Miller, R.H.2    Purcell, R.H.3
  • 8
    • 29744462734 scopus 로고    scopus 로고
    • Basic residues in hypervariable region 1 of hepatitis c virus envelope glycoprotein E2 contribute to virus entry
    • Callens, N., Ciczora, Y., Bartosch, B., Vu-Dac, N., Cosset, F. L., Pawlotsky, J. M., Penin, F. & Dubuisson, J. (2005). Basic residues in hypervariable region 1 of hepatitis c virus envelope glycoprotein E2 contribute to virus entry. J Virol 79, 15331-15341.
    • (2005) J Virol , vol.79 , pp. 15331-15341
    • Callens, N.1    Ciczora, Y.2    Bartosch, B.3    Vu-Dac, N.4    Cosset, F.L.5    Pawlotsky, J.M.6    Penin, F.7    Dubuisson, J.8
  • 9
    • 0842326022 scopus 로고    scopus 로고
    • Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes
    • Choisy, M., Woelk, C. H., Guegan, J. F. & Robertson, D. L. (2004). Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes. J Virol 78, 1962-1970.
    • (2004) J Virol , vol.78 , pp. 1962-1970
    • Choisy, M.1    Woelk, C.H.2    Guegan, J.F.3    Robertson, D.L.4
  • 10
    • 0036314509 scopus 로고    scopus 로고
    • Analysis of antigenicity and topology of E2 glycoprotein present on recombinant hepatitis C virus-like particles
    • Clayton, R. F., Owsianka, A., Aitken, J., Graham, S., Bhella, D. & Patel, A. H. (2002). Analysis of antigenicity and topology of E2 glycoprotein present on recombinant hepatitis C virus-like particles. J Virol 76, 7672-7682.
    • (2002) J Virol , vol.76 , pp. 7672-7682
    • Clayton, R.F.1    Owsianka, A.2    Aitken, J.3    Graham, S.4    Bhella, D.5    Patel, A.H.6
  • 11
    • 0037229179 scopus 로고    scopus 로고
    • Recognition of native hepatitis C virus E1E2 heterodimers by a human monoclonal antibody
    • Cocquerel, L., Quinn, E. R., Flint, M., Hadlock, K. G., Foung, S. K. & Levy, S. (2003). Recognition of native hepatitis C virus E1E2 heterodimers by a human monoclonal antibody. J Virol 77, 1604-1609.
    • (2003) J Virol , vol.77 , pp. 1604-1609
    • Cocquerel, L.1    Quinn, E.R.2    Flint, M.3    Hadlock, K.G.4    Foung, S.K.5    Levy, S.6
  • 15
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 781-783.
    • (1985) Evolution , vol.39 , pp. 781-783
    • Felsenstein, J.1
  • 17
    • 0035202613 scopus 로고    scopus 로고
    • Induction of hepatitis C virus E1 envelope protein-specific immune response can be enhanced by mutation of N-glycosylation sites
    • Fournillier, A., Wychowski, C., Boucreux, D., Baumert, T. F., Meunier, J. C., Jacobs, D., Muguet, S., Depla, E. & Inchauspe, G. (2001). Induction of hepatitis C virus E1 envelope protein-specific immune response can be enhanced by mutation of N-glycosylation sites. J Virol 75, 12088-12097.
    • (2001) J Virol , vol.75 , pp. 12088-12097
    • Fournillier, A.1    Wychowski, C.2    Boucreux, D.3    Baumert, T.F.4    Meunier, J.C.5    Jacobs, D.6    Muguet, S.7    Depla, E.8    Inchauspe, G.9
  • 19
    • 0038193898 scopus 로고    scopus 로고
    • Glycosylation of hepatitis C virus envelope proteins
    • Goffard, A. & Dubuisson, J. (2003). Glycosylation of hepatitis C virus envelope proteins. Biochimie 85, 295-301.
    • (2003) Biochimie , vol.85 , pp. 295-301
    • Goffard, A.1    Dubuisson, J.2
  • 21
    • 0033761870 scopus 로고    scopus 로고
    • Human monoclonal antibodies that inhibit binding of hepatitis C virus E2 protein to CD81 and recognize conserved conformational epitopes
    • Hadlock, K. G., Lanford, R. E., Perkins, S., Rowe, J., Yang, Q., Levy, S., Pileri, P., Abrignani, S. & Foung, S. K. (2000). Human monoclonal antibodies that inhibit binding of hepatitis C virus E2 protein to CD81 and recognize conserved conformational epitopes. J Virol 74, 10407-10416.
    • (2000) J Virol , vol.74 , pp. 10407-10416
    • Hadlock, K.G.1    Lanford, R.E.2    Perkins, S.3    Rowe, J.4    Yang, Q.5    Levy, S.6    Pileri, P.7    Abrignani, S.8    Foung, S.K.9
  • 22
    • 2942752209 scopus 로고    scopus 로고
    • Incomplete humoral immunity against hepatitis C virus is linked with distinct recognition of putative multiple receptors by E2 envelope glycoprotein
    • Heo, T. H., Chang, J. H., Lee, J. W., Foung, S. K., Dubuisson, J. & Kang, C. Y. (2004). Incomplete humoral immunity against hepatitis C virus is linked with distinct recognition of putative multiple receptors by E2 envelope glycoprotein. J Immunol 173, 446-455.
    • (2004) J Immunol , vol.173 , pp. 446-455
    • Heo, T.H.1    Chang, J.H.2    Lee, J.W.3    Foung, S.K.4    Dubuisson, J.5    Kang, C.Y.6
  • 26
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar, S., Tamura, K & Nei, M. (2004). MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5, 150-163.
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 29
    • 0027535672 scopus 로고
    • Glycosylation is necessary for the correct folding of human immunodeficiency virus gp120 in CD4 binding
    • Li, Y., Luo, L., Rasool, N. & Kang, C. Y. (1993). Glycosylation is necessary for the correct folding of human immunodeficiency virus gp120 in CD4 binding. J Virol 67, 584-588.
    • (1993) J Virol , vol.67 , pp. 584-588
    • Li, Y.1    Luo, L.2    Rasool, N.3    Kang, C.Y.4
  • 30
    • 0000163169 scopus 로고    scopus 로고
    • Flaviviridae: The viruses and their replication
    • In 4th edn, Edited by B. N. Fields, D. M. Knipe & P. M. Howley. New York: Lippincott Williams & Wilkins
    • Lindenbach, B. D. & Rice, C. M. (2001). Flaviviridae: the viruses and their replication. In Fields Virology, 4th edn, pp. 991-1041. Edited by B. N. Fields, D. M. Knipe & P. M. Howley. New York: Lippincott Williams & Wilkins.
    • (2001) Fields Virology , pp. 991-1041
    • Lindenbach, B.D.1    Rice, C.M.2
  • 31
    • 0032889281 scopus 로고    scopus 로고
    • Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
    • Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., Ingersoll, R., Sheppard, H. W. & Ray, S. C. (1999). Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73, 152-160.
    • (1999) J Virol , vol.73 , pp. 152-160
    • Lole, K.S.1    Bollinger, R.C.2    Paranjape, R.S.3    Gadkari, D.4    Kulkarni, S.S.5    Novak, N.G.6    Ingersoll, R.7    Sheppard, H.W.8    Ray, S.C.9
  • 32
    • 0033008053 scopus 로고    scopus 로고
    • Ontogeny of hepatitis C virus (HCV) hypervariable region 1 (HVR1) heterogeneity and HVR1 antibody responses over a 3 year period in a patient infected with HCV type 2b
    • Majid, A., Jackson, P., Lawal, Z., Pearson, G. M. J., Parker, H., Alexander, G. J. M., Allain, J.-P. & Petrik, J. (1999). Ontogeny of hepatitis C virus (HCV) hypervariable region 1 (HVR1) heterogeneity and HVR1 antibody responses over a 3 year period in a patient infected with HCV type 2b. J Gen Virol 80, 317-325.
    • (1999) J Gen Virol , vol.80 , pp. 317-325
    • Majid, A.1    Jackson, P.2    Lawal, Z.3    Pearson, G.M.J.4    Parker, H.5    Alexander, G.J.M.6    Allain, J.-P.7    Petrik, J.8
  • 33
    • 0026538287 scopus 로고
    • Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: Quasispecies nature of HCV genome distribution
    • Martell, M., Esteban, J. I., Quer, J., Genesca, J., Weiner, A., Esteban, R., Guardia, J. & Gomez, J. (1992). Hepatitis C virus (HCV) circulates as a population of different but closely related genomes: quasispecies nature of HCV genome distribution. J Virol 66, 3225-3229.
    • (1992) J Virol , vol.66 , pp. 3225-3229
    • Martell, M.1    Esteban, J.I.2    Quer, J.3    Genesca, J.4    Weiner, A.5    Esteban, R.6    Guardia, J.7    Gomez, J.8
  • 34
    • 0032898289 scopus 로고    scopus 로고
    • Analysis of the glycosylation sites of hepatitis C virus (HCV) glycoprotein E1 and the influence of E1 glycans on the formation of the HCV glycoprotein complex
    • Meunier, J.-C., Fournillier, A., Choukhi, A., Cahour, A., Cocquerel, L., Dubuisson, J. & Wychowski, C. (1999). Analysis of the glycosylation sites of hepatitis C virus (HCV) glycoprotein E1 and the influence of E1 glycans on the formation of the HCV glycoprotein complex. J Gen Virol 80, 887-896.
    • (1999) J Gen Virol , vol.80 , pp. 887-896
    • Meunier, J.-C.1    Fournillier, A.2    Choukhi, A.3    Cahour, A.4    Cocquerel, L.5    Dubuisson, J.6    Wychowski, C.7
  • 35
    • 0037165969 scopus 로고    scopus 로고
    • Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level
    • Moore, C. B., John, M., James, I. R., Christiansen, F. T., Witt, C. S. & Mallal, S. A. (2002). Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level. Science 296, 1439-1443.
    • (2002) Science , vol.296 , pp. 1439-1443
    • Moore, C.B.1    John, M.2    James, I.R.3    Christiansen, F.T.4    Witt, C.S.5    Mallal, S.A.6
  • 36
    • 0029791849 scopus 로고    scopus 로고
    • The natural history of hepatitis C: Clinical experiences
    • Muller, R. (1996). The natural history of hepatitis C: clinical experiences. J Hepatol 24 (Suppl. 2), 52-54.
    • (1996) J Hepatol , vol.24 , Issue.SUPPL. 2 , pp. 52-54
    • Muller, R.1
  • 37
    • 0034894359 scopus 로고    scopus 로고
    • Functional analysis of hepatitis C virus E2 glycoproteins and virus-like particles reveals structural dissimilarities between different forms of E2
    • Owsianka, A., Clayton, R. F., Loomis-Price, L. D., McKeating, J. A. & Patel, A. H. (2001). Functional analysis of hepatitis C virus E2 glycoproteins and virus-like particles reveals structural dissimilarities between different forms of E2. J Gen Virol 82, 1877-1883.
    • (2001) J Gen Virol , vol.82 , pp. 1877-1883
    • Owsianka, A.1    Clayton, R.F.2    Loomis-Price, L.D.3    McKeating, J.A.4    Patel, A.H.5
  • 38
    • 23844553059 scopus 로고    scopus 로고
    • Monoclonal antibody AP33 defines a broadly neutralizing epitope on the hepatitis C virus E2 envelope glycoprotein
    • Owsianka, A., Tarr, A. W., Juttla, V. S., Lavillette, D., Bartosch, B., Cosset, F. L., Ball, J. K. & Patel, A. H. (2005). Monoclonal antibody AP33 defines a broadly neutralizing epitope on the hepatitis C virus E2 envelope glycoprotein. J Virol 79, 11095-11104.
    • (2005) J Virol , vol.79 , pp. 11095-11104
    • Owsianka, A.1    Tarr, A.W.2    Juttla, V.S.3    Lavillette, D.4    Bartosch, B.5    Cosset, F.L.6    Ball, J.K.7    Patel, A.H.8
  • 39
    • 0035000935 scopus 로고    scopus 로고
    • Conservation of the conformation and positive charges of hepatitis C virus E2 envelope glycoprotein hypervariable region 1 points to a role in cell attachment
    • Penin, F., Combet, C., Germanidis, G., Frainais, P. O., Deleage, G. & Pawlotsky, J.-M. (2001). Conservation of the conformation and positive charges of hepatitis C virus E2 envelope glycoprotein hypervariable region 1 points to a role in cell attachment. J Virol 75, 5703-5710.
    • (2001) J Virol , vol.75 , pp. 5703-5710
    • Penin, F.1    Combet, C.2    Germanidis, G.3    Frainais, P.O.4    Deleage, G.5    Pawlotsky, J.-M.6
  • 40
    • 2342644898 scopus 로고    scopus 로고
    • The V1/V2 domain of gpl20 is a global regulator of the sensitivity of primary human immunodeficiency virus type I isolates to neutralization by antibodies commonly induced upon infection
    • Pinter, A., Honnen, W. J., He, Y., Gorny, M. K., Zolla-Pazner, S. & Kayman, S. C. (2004). The V1/V2 domain of gpl20 is a global regulator of the sensitivity of primary human immunodeficiency virus type I isolates to neutralization by antibodies commonly induced upon infection. J Virol 78, 5205-5215.
    • (2004) J Virol , vol.78 , pp. 5205-5215
    • Pinter, A.1    Honnen, W.J.2    He, Y.3    Gorny, M.K.4    Zolla-Pazner, S.5    Kayman, S.C.6
  • 41
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 42
    • 1642377363 scopus 로고    scopus 로고
    • The prolonged culture of human immunodeficiency virus type 1 in primary lymphocytes increases its sensitivity to neutralization by soluble CD4
    • Pugach, P., Kuhmann, S. E., Taylor, J., Marozsan, A. J., Snyder, A., Ketas, T., Wolinsky, S. M., Korber, B. T. & Moore, J. P. (2004). The prolonged culture of human immunodeficiency virus type 1 in primary lymphocytes increases its sensitivity to neutralization by soluble CD4. Virology 321, 8-22.
    • (2004) Virology , vol.321 , pp. 8-22
    • Pugach, P.1    Kuhmann, S.E.2    Taylor, J.3    Marozsan, A.J.4    Snyder, A.5    Ketas, T.6    Wolinsky, S.M.7    Korber, B.T.8    Moore, J.P.9
  • 43
    • 0037358963 scopus 로고    scopus 로고
    • The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: A Bayesian coalescent approach
    • Pybus, O. G., Drummond, A. J., Nakano, T., Robertson, B. H. & Rambaut, A. (2003). The epidemiology and iatrogenic transmission of hepatitis C virus in Egypt: a Bayesian coalescent approach. Mol Biol Evol 20, 381-387.
    • (2003) Mol Biol Evol , vol.20 , pp. 381-387
    • Pybus, O.G.1    Drummond, A.J.2    Nakano, T.3    Robertson, B.H.4    Rambaut, A.5
  • 44
  • 45
    • 0032976214 scopus 로고    scopus 로고
    • Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: Hypervariable region 1 as a decoy
    • Ray, S. C., Wang, Y. M., Laeyendecker, O., Ticehurst, J. R., Villano, S. A. & Thomas, D. L. (1999). Acute hepatitis C virus structural gene sequences as predictors of persistent viremia: hypervariable region 1 as a decoy. J Virol 73, 2938-2946.
    • (1999) J Virol , vol.73 , pp. 2938-2946
    • Ray, S.C.1    Wang, Y.M.2    Laeyendecker, O.3    Ticehurst, J.R.4    Villano, S.A.5    Thomas, D.L.6
  • 47
    • 0032408707 scopus 로고    scopus 로고
    • Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: Proposals for standardization
    • & other authors International Committee on Virus Taxonomy
    • Robertson, B., Myers, G., Howard, C., Brettin, T., Bukh, J., Gaschen, B., Gojobori, T., Maertens, G., Mizokami, M. & other authors (1998). Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization. International Committee on Virus Taxonomy. Arch Virol 143, 2493-2503.
    • (1998) Arch Virol , vol.143 , pp. 2493-2503
    • Robertson, B.1    Myers, G.2    Howard, C.3    Brettin, T.4    Bukh, J.5    Gaschen, B.6    Gojobori, T.7    Maertens, G.8    Mizokami, M.9
  • 48
    • 0037301359 scopus 로고    scopus 로고
    • Binding of the hepatitis C virus E2 glycoprotein to CD81 is strain specific and is modulated by a complex interplay between hypervariable regions 1 and 2
    • & other authors
    • Roccasecca, R., Ansuini, H., Vitelli, A., Meola, A., Scarselli, E., Acali, S., Pezzanera, M., Bruni Ercole, B., McKeating, J. & other authors (2003). Binding of the hepatitis C virus E2 glycoprotein to CD81 is strain specific and is modulated by a complex interplay between hypervariable regions 1 and 2. J Viral 77, 1856-1867.
    • (2003) J Viral , vol.77 , pp. 1856-1867
    • Roccasecca, R.1    Ansuini, H.2    Vitelli, A.3    Meola, A.4    Scarselli, E.5    Acali, S.6    Pezzanera, M.7    Bruni Ercole, B.8    McKeating, J.9
  • 50
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saltou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saltou, N.1    Nei, M.2
  • 52
    • 0029940696 scopus 로고    scopus 로고
    • Rapid selection for an N-linked oligosaccharide by monoclonal antibodies directed against the V3 loop of human immunodeficiency virus type 1
    • Schønning, K., Jansson, B., Olofsson, S. & Hansen, J.-E. S. (1996). Rapid selection for an N-linked oligosaccharide by monoclonal antibodies directed against the V3 loop of human immunodeficiency virus type 1. J Gen Virol 77, 753-758.
    • (1996) J Gen Virol , vol.77 , pp. 753-758
    • Schønning, K.1    Jansson, B.2    Olofsson, S.3    Hansen, J.-E.S.4
  • 53
    • 1842510015 scopus 로고    scopus 로고
    • High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression
    • Sheridan, I., Pybus, O. G., Holmes, E. C. & Klenerman, P. (2004). High-resolution phylogenetic analysis of hepatitis C virus adaptation and its relationship to disease progression. J Virol 78, 3447-3454.
    • (2004) J Virol , vol.78 , pp. 3447-3454
    • Sheridan, I.1    Pybus, O.G.2    Holmes, E.C.3    Klenerman, P.4
  • 54
    • 0028140138 scopus 로고
    • Neutralizing antibodies against hepatitis C virus and the emergence of neutralization escape mutant viruses
    • Shimizu, Y. K., Hijikata, M., Iwamoto, A., Alter, H. J., Purcell, R. H. & Yoshikura, H. (1994). Neutralizing antibodies against hepatitis C virus and the emergence of neutralization escape mutant viruses. J Virol 68, 1494-1500.
    • (1994) J Virol , vol.68 , pp. 1494-1500
    • Shimizu, Y.K.1    Hijikata, M.2    Iwamoto, A.3    Alter, H.J.4    Purcell, R.H.5    Yoshikura, H.6
  • 55
    • 0030587469 scopus 로고    scopus 로고
    • A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell cultures
    • Shimizu, Y. K, Igarashi, H., Kiyohara, T., Cabezon, T., Farci, P., Purcell, R. H. & Yoshikura, H. (1996). A hyperimmune serum against a synthetic peptide corresponding to the hypervariable region 1 of hepatitis C virus can prevent viral infection in cell cultures. Virology 223, 409-412.
    • (1996) Virology , vol.223 , pp. 409-412
    • Shimizu, Y.K.1    Igarashi, H.2    Kiyohara, T.3    Cabezon, T.4    Farci, P.5    Purcell, R.H.6    Yoshikura, H.7
  • 56
    • 0035062569 scopus 로고    scopus 로고
    • 2000 Fleming Lecture. The origin and evolution of hepatitis viruses in humans
    • Simmonds, P. (2001a). 2000 Fleming Lecture. The origin and evolution of hepatitis viruses in humans. J Gen Virol 82, 693-712.
    • (2001) J Gen Virol , vol.82 , pp. 693-712
    • Simmonds, P.1
  • 57
    • 0035968355 scopus 로고    scopus 로고
    • Reconstructing the origins of human hepatitis viruses
    • Simmonds, P. (2001b). Reconstructing the origins of human hepatitis viruses. Philos Trans R Soc Lond B Biol Sci 356, 1013-1026.
    • (2001) Philos Trans R Soc Lond B Biol Sci , vol.356 , pp. 1013-1026
    • Simmonds, P.1
  • 58
    • 7444256169 scopus 로고    scopus 로고
    • Genetic diversity and evolution of hepatitis C virus - 15 years on
    • Simmonds, P. (2004). Genetic diversity and evolution of hepatitis C virus - 15 years on. J Gen Virol 85, 3173-3188.
    • (2004) J Gen Virol , vol.85 , pp. 3173-3188
    • Simmonds, P.1
  • 60
    • 0032875445 scopus 로고    scopus 로고
    • The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models
    • Sullivan, J, Swofford, D. L. & Naylor, G. J. P. (1999). The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models. Mol Biol Evol 16, 1347-1356.
    • (1999) Mol Biol Evol , vol.16 , pp. 1347-1356
    • Sullivan, J.1    Swofford, D.L.2    Naylor, G.J.P.3
  • 61
    • 0004248459 scopus 로고    scopus 로고
    • PAUP*: Phylogenetic analysis using parsinomy (*and other methods).: Version 4
    • Sunderland, MA: Sinauer Associates
    • Swofford, D. L. (2003). PAUP*: phylogenetic analysis using parsinomy (*and other methods).: Version 4. Sunderland, MA: Sinauer Associates.
    • (2003)
    • Swofford, D.L.1
  • 62
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura, K. & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10, 512-526.
    • (1993) Mol Biol Evol , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 64
    • 0036302087 scopus 로고    scopus 로고
    • Structural features of envelope proteins on hepatitis C virus-like particles as determined by anti-envelope monoclonal antibodies and CD81 binding
    • Triyatni, M., Vergalla, J., Davis, A. R., Hadlock, K. G., Foung, S. K. & Liang, T. J. (2002). Structural features of envelope proteins on hepatitis C virus-like particles as determined by anti-envelope monoclonal antibodies and CD81 binding. Virology 298, 124-132.
    • (2002) Virology , vol.298 , pp. 124-132
    • Triyatni, M.1    Vergalla, J.2    Davis, A.R.3    Hadlock, K.G.4    Foung, S.K.5    Liang, T.J.6
  • 65
    • 0033120555 scopus 로고    scopus 로고
    • Mutations in immunodominant T cell epitopes derived from the nonstructural 3 protein of hepatitis C virus have the potential for generating escape variants that may have important consequences for T cell recognition
    • Wang, H. & Eckels, D. D. (1999). Mutations in immunodominant T cell epitopes derived from the nonstructural 3 protein of hepatitis C virus have the potential for generating escape variants that may have important consequences for T cell recognition. J Immunol 162, 4177-4183.
    • (1999) J Immunol , vol.162 , pp. 4177-4183
    • Wang, H.1    Eckels, D.D.2
  • 67
    • 0033060563 scopus 로고    scopus 로고
    • Global surveillance and control of hepatitis C. Report of a WHO Consultation organized in collaboration with the Viral Hepatitis Prevention Board, Antwerp, Belgium
    • WHO
    • WHO (1999). Global surveillance and control of hepatitis C. Report of a WHO Consultation organized in collaboration with the Viral Hepatitis Prevention Board, Antwerp, Belgium. J Viral Hepat 6, 35-47.
    • (1999) J Viral Hepat , vol.6 , pp. 35-47
  • 68
    • 0028965263 scopus 로고
    • Characterization of neutralization epitopes in the V2 region of human immunodeficiency virus type 1 gp120: Role of glycosylation in the correct folding of the V1/V2 domain
    • Wu, Z., Kayman, S. C., Honnen, W., Revesz, K., Chen, H., Vijh-Warder, S., Tilley, S. A., McKeating, J., Shotton, C. & Pinter, A. (1995). Characterization of neutralization epitopes in the V2 region of human immunodeficiency virus type 1 gp120: role of glycosylation in the correct folding of the V1/V2 domain. J Virol 69, 2271-2278.
    • (1995) J Virol , vol.69 , pp. 2271-2278
    • Wu, Z.1    Kayman, S.C.2    Honnen, W.3    Revesz, K.4    Chen, H.5    Vijh-Warder, S.6    Tilley, S.A.7    McKeating, J.8    Shotton, C.9    Pinter, A.10
  • 70
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang, Z. (1994a). Estimating the pattern of nucleotide substitution. J Mol Evol 39, 105-111.
    • (1994) J Mol Evol , vol.39 , pp. 105-111
    • Yang, Z.1
  • 71
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang, Z. (1994b). Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J Mol Evol 39, 306-314.
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 72
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang, Z. (1997). PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13, 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 73
    • 0033639150 scopus 로고    scopus 로고
    • Statistical methods for detecting molecular adaptation
    • Yang, Z. & Bielawski, J. P. (2000). Statistical methods for detecting molecular adaptation. Trends Ecol Evol 15, 496-503.
    • (2000) Trends Ecol Evol , vol.15 , pp. 496-503
    • Yang, Z.1    Bielawski, J.P.2
  • 74
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressure at amino acid sites
    • Yang, Z., Nielsen, R., Goldman, N. & Pedersen, A. M. (2000). Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155, 431-449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pedersen, A.M.4
  • 75
    • 0345742565 scopus 로고    scopus 로고
    • CD81 is required for hepatitis C virus glycoprotein- mediated viral infection
    • Zhang, J., Randall, G., Higginbottom, A., Monk, P., Rice, C. M. & McKeating, J. A. (2004). CD81 is required for hepatitis C virus glycoprotein- mediated viral infection. J Virol 78, 1448-1455.
    • (2004) J Virol , vol.78 , pp. 1448-1455
    • Zhang, J.1    Randall, G.2    Higginbottom, A.3    Monk, P.4    Rice, C.M.5    McKeating, J.A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.