Gat1p, a GATA family protein whose production is sensitive to nitrogen catabolite repression, participates in transcriptional activation of nitrogen-catabolic genes in Saccharomyces cerevisiae

Molecular and Cellular Biology

Volumn 16, Issue 3, 1996, Pages 847-858

  Coffman, Jonathan A ^a   Rai, Rajendra ^a   Cunningham, Thomas ^a   Svetlov, Vladimir ^a   Cooper, Terrance G ^a  

^a UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTION FACTOR GATA 1;

ARTICLE; CATABOLITE REPRESSION; CONTROLLED STUDY; NITROGEN METABOLISM; NONHUMAN; PRIORITY JOURNAL; PROTEIN SYNTHESIS REGULATION; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION INITIATION; TRANSCRIPTION REGULATION;

SACCHAROMYCES CEREVISIAE;

EID: 0030028431     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.16.3.847     Document Type: Article

References (62)

1. Andre, B., and J.-C. Jauniaux. 1990. Nucleotide sequence of the yeast UGA1 gene encoding GABA transaminase. Nucleic Acids Res. 18:3049.
2. GATA, a cluster of 5′GAT(A/T)A-3′ upstream from the UGA4 gene of Saccharomyces cerevisiae Nucleic Acids Res. 23:558-564.
3. Blinder, D., and B. Magasanik. 1995. Recognition of nitrogen-responsive upstream activation sequences of Saccharomyces cerevisiae by the product of the GLN3 gene. J. Bacteriol. 177:4190-4193.
4. Brandriss, M. C., and B. Magasanik. 1979. Genetics and physiology of proline utilization in Saccharomyces cerevisiae: mutation causing constitutive enzyme expression. J. Bacteriol. 140:504-507.
5. Brent, R. 1994. Personal communication.
6. NTR (GATAA) responsible for nitrogen catabolite repression-sensitive transcriptional activation of the allantoin pathway genes in Saccharomyces cerevisiae. J. Bacteriol. 173:4977-4982.
7. Carlson, M., and D. Botstein. 1982. Two differentially regulated mRNAs with different 5′ ends encode secretory and intracellular forms of yeast invertase. Cell 28:145-154
8. Chisholm, G., and T. G. Cooper. 1982. Isolation and characterization of mutations that produce the allantoin-degrading enzymes constitutively in Saccharomyces cerevisiae. Mol. Cell. Biol. 2:1088-1095.
9. Coffman, J. A., and T. G. Cooper. 1994. Unpublished observations.
10. Coffman, J. A., and T. G. Cooper. 1995. Nitrogen catabolite repression in S. cerevisiae: a branched control network, p. 20 In European Research Conferences. Control of metabolic flux: metabolic pathway engineering in yeasts. Granada, Spain, 7 to 12 April 1995.
11. Coffman, J. A., and T. G. Cooper. 1995. Nitrogen catabolite repression in S. cerevisiae: a branched control network. Yeast 11:S485.
12. NTR element in Saccharomyces cerevisiae. J. Bacteriol. 176:7476-7483.
13. Coffman, J. A., R. Rai, and T. G. Cooper. 1995. Genetic evidence for Gln3p-independent, nitrogen catabotite repression-sensitive gene expression in Saccharomyces cerevisiae. J. Bacteriol. 177:6910-6918.
14. Coffman, J., R. Rai, T. Cunningham, V. Svetlov, and T. G. Cooper. 1995. NCR-sensitive transport gene expression in S. cerevisiae is controlled by a branched regulatory pathway consisting of multiple NCR responsive activator proteins, p. 12. In Proceedings of the Thirteenth Small Meeting on Yeast Transport and Energetics, Tresf, Czech Republic, 6 to 9 September, 1995.
15. Cooper, T. G. 1982. Nitrogen metabolism in Saccharomyces cerevisiae, p. 39-99. In J. N Strathern, E W. Jones, and J. Broach (ed.), The molecular biology of the yeast Saccharomyces: metabolism and gene expression. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
16. Cooper, T. G. 1994 Allantoin degradative system - an integrated transcriptional response to multiple signals, p 139-169. In G. Marzluf and R. Bambrl (ed.), Mycota III.
17. Cooper, T. G., D. Ferguson, R. Rai, and N. Bysani. 1990. The GLN3 gene product is required for transcriptional activation of allantoin system gene expression in Saccharomyces cerevisiae. J. Bacteriol. 172:1014-1018.
18. Cooper, T. G., R. Rai, and H. S. Yoo. 1989. Requirement of upstream activation sequences for nitrogen catabolite repression of the allantoin system genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 9:5440-5444.
19. Coornaert, D., S. Vissers, B. Andre, and M. Grenson. 1992. The UGA43 negative regulatory gene of Saccharomyces cerevisiae contains both a GATA-1 type zinc finger and a putative leucine zipper. Curr. Genet 21: 301-307.
20. Coschigano, P. W., and B. Magasanik. 1991 The URE2 gene product of Saccharomyces cerevisiae plays an important role in the cellular response to the nitrogen source and has homology to glutathione S-transferase. Mol. Cell. Biol. 11:822-832.
21. Courchesne, W. E., and B. Magasanik. 1988 Regulation of nitrogen assimilation in Saccharomyces cerevisiae: roles of the URE2 and GLN3 genes. J Bacteriol 170:705-713.
22. Cunningham, T. S., and T. G. Cooper. 1991. Expression of the DAL80 gene, whose product is homologous to the GATA factors and is a negative regulator of multiple nitrogen catabolic genes in Saccharomyces cerevisiae, is sensitive to nitrogen catabolite repression. Mol. Cell Biol. 11:6205-6215.
23. GATA) J. Bacteriol. 175:5851-5861.
24. NTR site required for GLN3-dependent transcriptional activation also mediates DAL80-responsive regulation and DAL80 protein binding in Saccharomyces cerevisiae. J. Bacteriol. 176:4718-4725.
25. NTR elements and activates transcription of nitrogen catabolite repression-sensitive genes. Submitted for publication.
26. Daugherty, J. R., R. Rai, H. M. El Berry, and T. G. Cooper. 1993. Regulatory circuit for responses of nitrogen catabolic gene expression to the GLN3 and DALSO proteins and nitrogen catabolite repression in Saccharomyces cerevisiae. J. Bacteriol. 175:64-73.
27. Drillien, R., M. Aigle, and F. Lacroute. 1973. Yeast mutants pleiotropically impaired in the regulation of two glutamate dehydrogenases. Biochem. Biophys. Res Commun. 53:367-372
28. Drillien, R., and F. Lacroute. 1972. Ureidosuccinic acid uptake in yeast and some aspects of its regulation. J. Bacteriol. 199:203-208.
29. El Berry, H. M., M. L. Majumdar, T. S. Cunningham, R. A. Sumrada, and T. G. Cooper. 1993. Regulation of the urea active transporter gene (DUR3) in Saccharomyces cerevisiae. J. Bacteriol. 175:4688-4698.
30. Grenson, M., E. Dubois, M. Piotrowska, R. Drillien, and M. Aigle. 1974. Ammonia assimilation in Saccharomyces cerevisiae as mediated by the two glutamate de hydrogenases. Mol. Gen. Genet. 128:73-85.
31. Guarente, L., and T. Mason. 1983 Heme regulatory transcription of the CYC1 gene of S. cerevisiae via an upstream activation site. Cell 32:1279-1286.
32. Gyuris, J., E. Golemis, H. Chertkov, and R. Brent. 1993. cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75:791-803.
33. Ito, H., Y. Fukuda, K. Murata, and A. Kimura. 1983. Transformation of intact yeast cells treated with alkali cations. J. Bacteriol. 133:163-168.
34. Jauniaux, J.-C., and M. Grenson. 1990. GAP1, the general amino acid permease gene of Saccharomyces cerevisiae: nucleotide sequence, protein similarity with other baker's yeast amino acid permeases, and nitrogen catabolite repression. Eur. J. Biochem. 190:39-44.
35. Ljungdahl, P. O., J. Gimeno, C. A. Styles, and G. R. Fink. 1992. SHR3: a novel component of the secretory pathway specifically required for localization of amino acid permeases in yeast. Cell 71:463-478.
36. Miller, S. M., and B. Magasanik. 1991. Role of the complex upstream region of the GDH2 gene in nitrogen regulation of the NAD-linked glutamate dehydrogenase in Saccharomyces cerevisiae. Mol. Cell. Biol. 11:6229-6247.
37. Minehart, P. L., and B. Magasanik. 1991. Sequence and expression of GLN3, a positive nitrogen regulatory gene of Saccharomyces cerevisiae encoding a protein with a putative zinc finger DNA-binding domain. Mol. Cell. Biol. 11:6216-6228.
38. Minehart, P. L., and B. Magasanik. 1992. Sequence of the GLN1 gene of Saccharomyces cerevisiae: role of the upstream region in regulation of glutamine synthetase expression. J. Bacteriol. 174:1828-1836.
39. Mitcnell, A. P., and B. Magasanik. 1984. Regulation of glutamine-repressible gene products by the GLN3 function in Saccharomyces cerevisiae. Mol. Cell. Biol. 4:2758-2766.
40. Murakami, Y. 1995. Saccharomyces cerevisiae chromosome VI complete DNA sequence. DDBJ accession no. 270148.
41. Park, H.-D., R. M. Luche, and T. G. Cooper. 1992. The yeast UME6 gene product is required for transcriptional repression mediated by the CAR1 URS1 repressor binding site. Nucleic Acids Res. 20:1909-1915.
42. Rai, R., and T. G. Cooper. 1992. Unpublished observations.
43. NTR functioning in combination with other UAS elements underlies exceptional patterns of nitrogen regulation in Saccharomyces cerevisiae. Yeast 11:247-260.
44. Rai, R., F. Genbauffe, H. Z. Lea, and T. G. Cooper. 1987. Transcriptional regulation of the DAL5 gene in Saccharomyces cerevisiae. J. Bacteriol. 169:3521-3524.
45. Rai, R., F. S. Genbauffe, and T. G. Cooper. 1988. Structure and transcription of the allantoate permease gene (DAL5) from Saccharomyces cerevisiae. J. Bacteriol. 170:266-271.
46. Rai, R., F. S. Genbauffe, R. A. Sumrada, and T. G. Cooper. 1989. Identification of sequences responsible for transcriptional activation of the allantoate permease gene m Saccharomyces cerevisiae. Mol. Cell. Biol. 9:602-608.
47. Rasmussen, S. W. 1995. A 37.5 kb region of yeast chromosome X includes the SME1, MEF2, GSH1, and CSD3 genes, a TCP-1 related gene, an open reading frame similar to the DALSO gene and a tRNA-A. Yeast 11:873-884
48. Rose, M. D., P. Novick, J. H. Thomas, D. Botstein, and G. R. Fink. 1987 A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector. Gene 60:237-243.
49. Rothstein, R. J. 1983. One-step gene disruption in yeast. Methods Enzymol 101:202-211.
50. Smith, M. M., and O. S. Anderson. 1983. DNA sequences of yeast H3 and H4 histone genes from two non-allelic gene sets encode identical H3 and H4 proteins. J. Mol. Biol. 169:663-690.
51. Stanbrough, M. 1993 Transcriptional and post-transcriptional regulation of the general amino acid permease of Saccharomyces cerevisiae. Massachusetts Institute of Technology, Cambridge.
52. Stanbrough, M., and B. Magasanik, 1995. Transcriptional and posttranslational regulation of the general amino acid permease of Saccharomyces cerevisiae J. Bacteriol. 177:94-102
53. Studier, F. W., A. H. Rosenberg, J. J. Dunn, and J. W. Debendorff. 1990 Use of T7 polymerase to direct expression of cloned genes. Methods Enzymol 185:60-89.
54. Svetlov, V. 1995. Unpublished observations.
55. Tabor, S. 1990. Expression using the T7 RNA polymerase/promoter system. p. 16.2.1-16.2.11. In F. A. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. Greene Publishing and Wiley Interscience, New York.
56. Vissers, S., B. Andre, F. Muyldermans, and M. Grenson. 1989. Positive and negative regulatory elements control the expression of the UGA gene coding for the inducible 4-aminobutyric-acid-specific-permease in Saccharomyces cerevisiae. Eur. J Biochem. 181:357-361.
57. Wang, S.-S., and M. C. Brandriss. 1987 Proline utilization in Saccharomyces cerevisiae: sequence, regulation, and mitochondrial localization of the PUT1 gene product. Mol. Cell. Biol. 7:4431-4440.
58. Wiame, J.-M., M. Grenson, and H. Arst, 1985. Nitrogen catabolite repression in yeasts and filamentous fungi Adv. Microb. Physiol 26:1-87.
59. Wickerham, L. J. 1946. A critical evaluation of the nitrogen assimilation tests commonly used in the classification of yeasts. J. Bacteriol. 52:293-301.
60. Wickner, R. B. 1994. [URE3] as an altered Ure2 protein: evidence for a prion analog in Saccharomyces cerevisiae. Science 264:566-569
61. Xu, S., D. A. Falvey, and M. C. Brandriss. 1995. Roles of URE2 and GLN3 in the proline utilization pathway in Saccharomyces cerevisiae. Mol Cell. Biol 15:2321-2330
62. Yoo, H. S. 1995. Personal communication