메뉴 건너뛰기




Volumn 63, Issue 2, 2007, Pages 521-529

Equal rates of repair of DNA photoproducts in transcribed and non-transcribed strands in Sulfolobus solfataricus

Author keywords

[No Author keywords available]

Indexed keywords

DEOXYRIBODIPYRIMIDINE PHOTOLYASE;

EID: 33846053661     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2006.05516.x     Document Type: Article
Times cited : (28)

References (46)
  • 1
    • 10644271631 scopus 로고    scopus 로고
    • Archaeal genetics - the third way
    • Allers, T., and Mevarech, M. (2005) Archaeal genetics - the third way. Nat Rev Genet 6: 58-73.
    • (2005) Nat Rev Genet , vol.6 , pp. 58-73
    • Allers, T.1    Mevarech, M.2
  • 2
    • 13844264518 scopus 로고    scopus 로고
    • Dual-genome primer design for construction of DNA microarrays
    • Andersson, A., Bernander, R., and Nilsson, P. (2005) Dual-genome primer design for construction of DNA microarrays. Bioinformatics 21: 325-332.
    • (2005) Bioinformatics , vol.21 , pp. 325-332
    • Andersson, A.1    Bernander, R.2    Nilsson, P.3
  • 3
    • 3042615963 scopus 로고    scopus 로고
    • Systems level insights into the stress response to UV radiation in the halophilic archaeon halobacterium NRC-1
    • Baliga, N.S., Bjork, S.J., Bonneau, R., Pan, M., Iloanusi, C., Kottemann, M.C., et al. (2004) Systems level insights into the stress response to UV radiation in the halophilic archaeon halobacterium NRC-1. Genome Res 14: 1025-1035.
    • (2004) Genome Res , vol.14 , pp. 1025-1035
    • Baliga, N.S.1    Bjork, S.J.2    Bonneau, R.3    Pan, M.4    Iloanusi, C.5    Kottemann, M.C.6
  • 4
    • 0021905437 scopus 로고
    • DNA repair in an active gene: Removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall
    • Bohr, V.A., Smith, C.A., Okumoto, D.S., and Hanawalt, P.C. (1985) DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40: 359-369.
    • (1985) Cell , vol.40 , pp. 359-369
    • Bohr, V.A.1    Smith, C.A.2    Okumoto, D.S.3    Hanawalt, P.C.4
  • 5
    • 3042652965 scopus 로고    scopus 로고
    • In UV-irradiated Saccharomyces cerevisiae, overexpression of Swi2/Snf2 family member Rad26 increases transcription-coupled repair and repair of the non-transcribed strand
    • Bucheli, M., and Sweder, K. (2004) In UV-irradiated Saccharomyces cerevisiae, overexpression of Swi2/Snf2 family member Rad26 increases transcription-coupled repair and repair of the non-transcribed strand. Mol Microbiol 52: 1653-1663.
    • (2004) Mol Microbiol , vol.52 , pp. 1653-1663
    • Bucheli, M.1    Sweder, K.2
  • 6
    • 0034918714 scopus 로고    scopus 로고
    • The defect in transcription-coupled repair displayed by a Saccharomyces cerevisiae rad26 mutant is dependent on carbon source and is not associated with a lack of transcription
    • Bucheli, M., Lommel, L., and Sweder, K. (2001) The defect in transcription-coupled repair displayed by a Saccharomyces cerevisiae rad26 mutant is dependent on carbon source and is not associated with a lack of transcription. Genetics 158: 989-997.
    • (2001) Genetics , vol.158 , pp. 989-997
    • Bucheli, M.1    Lommel, L.2    Sweder, K.3
  • 7
    • 0345531143 scopus 로고    scopus 로고
    • A DNA translocation motif in the bacterial transcription-repair coupling factor, Mfd
    • Chambers, A.L., Smith, A.J., and Savery, N.J. (2003) A DNA translocation motif in the bacterial transcription-repair coupling factor, Mfd. Nucleic Acids Res 31: 6409-6418.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6409-6418
    • Chambers, A.L.1    Smith, A.J.2    Savery, N.J.3
  • 8
    • 0031800821 scopus 로고    scopus 로고
    • Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli
    • Crowley, D.J., and Hanawalt, P.C. (1998) Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli. J Bacteriol 180: 3345-3352.
    • (1998) J Bacteriol , vol.180 , pp. 3345-3352
    • Crowley, D.J.1    Hanawalt, P.C.2
  • 9
    • 0035837586 scopus 로고    scopus 로고
    • The SOSdependent upregulation of uvrD is not required for efficient nucleotide excision repair of ultraviolet light induced DNA photoproducts in Escherichia coli
    • Crowley, D.J., and Hanawalt, P.C. (2001) The SOSdependent upregulation of uvrD is not required for efficient nucleotide excision repair of ultraviolet light induced DNA photoproducts in Escherichia coli. Mutat Res 485: 319-329.
    • (2001) Mutat Res , vol.485 , pp. 319-329
    • Crowley, D.J.1    Hanawalt, P.C.2
  • 10
    • 26244442261 scopus 로고    scopus 로고
    • DNA damage detection by an archaeal single-stranded DNA-binding protein
    • Cubeddu, L., and White, M.F. (2005) DNA damage detection by an archaeal single-stranded DNA-binding protein. J Mol Biol 353: 507-516.
    • (2005) J Mol Biol , vol.353 , pp. 507-516
    • Cubeddu, L.1    White, M.F.2
  • 11
    • 0029029741 scopus 로고
    • Li-Fraumeni syndrome fibroblasts homozygous for p53 mutations are deficient in global DNA repair but exhibit normal transcription-coupled repair and enhanced UV resistance
    • Ford, J.M., and Hanawalt, P.C. (1995) Li-Fraumeni syndrome fibroblasts homozygous for p53 mutations are deficient in global DNA repair but exhibit normal transcription-coupled repair and enhanced UV resistance. Proc Natl Acad Sci USA 92: 8876-8880.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8876-8880
    • Ford, J.M.1    Hanawalt, P.C.2
  • 13
    • 0034175750 scopus 로고    scopus 로고
    • The question of DNA repair in hyperthermophilic archaea
    • Grogan, D.W. (2000) The question of DNA repair in hyperthermophilic archaea. Trends Microbiol 8: 180-185.
    • (2000) Trends Microbiol , vol.8 , pp. 180-185
    • Grogan, D.W.1
  • 14
    • 1942467443 scopus 로고    scopus 로고
    • Stability and repair of DNA in hyperthermophilic Archaea
    • Grogan, D.W. (2004) Stability and repair of DNA in hyperthermophilic Archaea. Curr Issues Mol Biol 6: 137-144.
    • (2004) Curr Issues Mol Biol , vol.6 , pp. 137-144
    • Grogan, D.W.1
  • 15
    • 0034940811 scopus 로고    scopus 로고
    • Genetic fidelity under harsh conditions: Analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius
    • Grogan, D.W., Carver, G.T., and Drake, J.W. (2001) Genetic fidelity under harsh conditions: analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius. Proc Natl Acad Sci USA 98: 7928-7933.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 7928-7933
    • Grogan, D.W.1    Carver, G.T.2    Drake, J.W.3
  • 16
    • 0029744847 scopus 로고    scopus 로고
    • RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase
    • Guzder, S.N., Habraken, Y., Sung, P., Prakash, L., and Prakash, S. (1996) RAD26, the yeast homolog of human Cockayne's syndrome group B gene, encodes a DNA-dependent ATPase. J Biol Chem 271: 18314-18317.
    • (1996) J Biol Chem , vol.271 , pp. 18314-18317
    • Guzder, S.N.1    Habraken, Y.2    Sung, P.3    Prakash, L.4    Prakash, S.5
  • 17
    • 0023583191 scopus 로고
    • Preferential DNA repair in expressed genes
    • Hanawalt, P.C. (1987) Preferential DNA repair in expressed genes. Environ Health Perspect 76: 9-14.
    • (1987) Environ Health Perspect , vol.76 , pp. 9-14
    • Hanawalt, P.C.1
  • 18
    • 27844542206 scopus 로고    scopus 로고
    • Archaeal DNA replication and repair
    • Kelman, Z., and White, M.F. (2005) Archaeal DNA replication and repair. Curr Opin Microbiol 8: 669-676.
    • (2005) Curr Opin Microbiol , vol.8 , pp. 669-676
    • Kelman, Z.1    White, M.F.2
  • 19
    • 0023781396 scopus 로고
    • Differential repair of DNA damage in the human metallothionein gene family
    • Leadon, S.A., and Snowden, M.M. (1988) Differential repair of DNA damage in the human metallothionein gene family. Mol Cell Biol 8: 5331-5338.
    • (1988) Mol Cell Biol , vol.8 , pp. 5331-5338
    • Leadon, S.A.1    Snowden, M.M.2
  • 20
    • 2342468069 scopus 로고    scopus 로고
    • Three replication origins in Sulfolobus species: Synchronous initiation of chromosome replication and asynchronous termination
    • Lundgren, M., Andersson, A., Chen, L., Nilsson, P., and Bernander, R. (2004) Three replication origins in Sulfolobus species: synchronous initiation of chromosome replication and asynchronous termination. Proc Natl Acad Sci USA 101: 7046-7051.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 7046-7051
    • Lundgren, M.1    Andersson, A.2    Chen, L.3    Nilsson, P.4    Bernander, R.5
  • 21
    • 0037864281 scopus 로고    scopus 로고
    • Repair of UV damage in Halobacterium salinarum
    • McCready, S., and Marcello, L. (2003) Repair of UV damage in Halobacterium salinarum. Biochem Soc Trans 31: 694-698.
    • (2003) Biochem Soc Trans , vol.31 , pp. 694-698
    • McCready, S.1    Marcello, L.2
  • 22
    • 0037415719 scopus 로고    scopus 로고
    • A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins
    • Mahdi, A.A., Briggs, G.S., Sharples, G.J., Wen, Q., and Lloyd, R.G. (2003) A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins. EMBO J 22: 724-734.
    • (2003) EMBO J , vol.22 , pp. 724-734
    • Mahdi, A.A.1    Briggs, G.S.2    Sharples, G.J.3    Wen, Q.4    Lloyd, R.G.5
  • 23
    • 0024426244 scopus 로고
    • Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
    • Mellon, I., and Hanawalt, P.C. (1989) Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature 342: 95-98.
    • (1989) Nature , vol.342 , pp. 95-98
    • Mellon, I.1    Hanawalt, P.C.2
  • 24
    • 0023663101 scopus 로고
    • Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene
    • Mellon, I., Spivak, G., and Hanawalt, P.C. (1987) Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51: 241-249.
    • (1987) Cell , vol.51 , pp. 241-249
    • Mellon, I.1    Spivak, G.2    Hanawalt, P.C.3
  • 25
    • 0031795759 scopus 로고    scopus 로고
    • Nucleotide excision repair in the third kingdom
    • Ogrunc, M., Becker, D.F., Ragsdale, S.W., and Sancar, A. (1998) Nucleotide excision repair in the third kingdom. J Bacteriol 180: 5796-5798.
    • (1998) J Bacteriol , vol.180 , pp. 5796-5798
    • Ogrunc, M.1    Becker, D.F.2    Ragsdale, S.W.3    Sancar, A.4
  • 26
    • 0032577452 scopus 로고    scopus 로고
    • Lack of transcription-coupled repair of acetylaminofluorene DNA adducts in human fibroblasts contrasts their efficient inhibition of transcription
    • van Oosterwijk, M.F., Filon, R., de Groot, A.J., van Zeeland, A.A., and Mullenders, L.H. (1998) Lack of transcription-coupled repair of acetylaminofluorene DNA adducts in human fibroblasts contrasts their efficient inhibition of transcription. J Biol Chem 273: 13599-13604.
    • (1998) J Biol Chem , vol.273 , pp. 13599-13604
    • van Oosterwijk, M.F.1    Filon, R.2    de Groot, A.J.3    van Zeeland, A.A.4    Mullenders, L.H.5
  • 27
    • 0028820253 scopus 로고
    • The other function of DNA photolyase: Stimulation of excision repair of chemical damage to DNA
    • Ozer, Z., Reardon, J.T., Hsu, D.S., Malhotra, K., and Sancar, A. (1995) The other function of DNA photolyase: stimulation of excision repair of chemical damage to DNA. Biochemistry 34: 15886-15889.
    • (1995) Biochemistry , vol.34 , pp. 15886-15889
    • Ozer, Z.1    Reardon, J.T.2    Hsu, D.S.3    Malhotra, K.4    Sancar, A.5
  • 28
    • 0032716382 scopus 로고    scopus 로고
    • Nucleotide excision repair: From E. coli to man
    • Petit, C., and Sancar, A. (1999) Nucleotide excision repair: from E. coli to man. Biochimie 81: 15-25.
    • (1999) Biochimie , vol.81 , pp. 15-25
    • Petit, C.1    Sancar, A.2
  • 29
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl, M.W. (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 30
    • 14044270246 scopus 로고    scopus 로고
    • An archaeal endonuclease displays key properties of both eukaryal XPF-ERCC1 and Mus81
    • Roberts, J., and White, M.F. (2005) An archaeal endonuclease displays key properties of both eukaryal XPF-ERCC1 and Mus81. J Biol Chem 280: 5924-5928.
    • (2005) J Biol Chem , vol.280 , pp. 5924-5928
    • Roberts, J.1    White, M.F.2
  • 31
    • 0037772376 scopus 로고    scopus 로고
    • An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA
    • Roberts, J.A., Bell, S.D., and White, M.F. (2003) An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA. Mol Microbiol 48: 361-371.
    • (2003) Mol Microbiol , vol.48 , pp. 361-371
    • Roberts, J.A.1    Bell, S.D.2    White, M.F.3
  • 32
    • 33845770385 scopus 로고    scopus 로고
    • Romano, V., Napoli, A., Salerno, V., Valenti, A., Rossi, M., and Ciaramella, M. (2006) Lack of strand-specific repair of UV-induced DNA lesions in three genes of the archaeon Sulfolobus solfataricus. J Mol Biol. 10.1016/j.jmb.2006.10.045.
    • Romano, V., Napoli, A., Salerno, V., Valenti, A., Rossi, M., and Ciaramella, M. (2006) Lack of strand-specific repair of UV-induced DNA lesions in three genes of the archaeon Sulfolobus solfataricus. J Mol Biol. 10.1016/j.jmb.2006.10.045.
  • 33
    • 0029016491 scopus 로고
    • Repair of UV-induced pyrimidine(6-4)pyrimidone photoproducts is selectively inhibited in transcriptionally active genes after heat treatment of human fibroblasts
    • Sakkers, R.J., Filon, A.R., Kampinga, H.H., Konings, A.W., and Mullenders, L.H. (1995) Repair of UV-induced pyrimidine(6-4)pyrimidone photoproducts is selectively inhibited in transcriptionally active genes after heat treatment of human fibroblasts. Int J Radiat Biol 67: 495-499.
    • (1995) Int J Radiat Biol , vol.67 , pp. 495-499
    • Sakkers, R.J.1    Filon, A.R.2    Kampinga, H.H.3    Konings, A.W.4    Mullenders, L.H.5
  • 34
    • 0344442400 scopus 로고    scopus 로고
    • Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus
    • Salerno, V., Napoli, A., White, M.F., Rossi, M., and Ciaramella, M. (2003) Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus. Nucleic Acids Res 31: 6127-6138.
    • (2003) Nucleic Acids Res , vol.31 , pp. 6127-6138
    • Salerno, V.1    Napoli, A.2    White, M.F.3    Rossi, M.4    Ciaramella, M.5
  • 35
    • 0031020871 scopus 로고    scopus 로고
    • Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II
    • Selby, C.P., and Sancar, A. (1997) Human transcription-repair coupling factor CSB/ERCC6 is a DNA-stimulated ATPase but is not a helicase and does not disrupt the ternary transcription complex of stalled RNA polymerase II. J Biol Chem 272: 1885-1890.
    • (1997) J Biol Chem , vol.272 , pp. 1885-1890
    • Selby, C.P.1    Sancar, A.2
  • 36
    • 0026354699 scopus 로고
    • Escherichia coli mfd mutant deficient in 'mutation frequency decline' lacks strand-specific repair: In vitro complementation with purified coupling factor
    • Selby, C.P., Witkin, E.M., and Sancar, A. (1991) Escherichia coli mfd mutant deficient in 'mutation frequency decline' lacks strand-specific repair: in vitro complementation with purified coupling factor. Proc Natl Acad Sci USA 88: 11574-11578.
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 11574-11578
    • Selby, C.P.1    Witkin, E.M.2    Sancar, A.3
  • 38
    • 0037031218 scopus 로고    scopus 로고
    • Ultraviolet-sensitive syndrome cells are defective in transcription-coupled repair of cyclobutane pyrimidine dimers
    • Spivak, G., Itoh, T., Matsunaga, T., Nikaido, O., Hanawalt, P., and Yamaizumi, M. (2002) Ultraviolet-sensitive syndrome cells are defective in transcription-coupled repair of cyclobutane pyrimidine dimers. DNA Repair (Amst) 1: 629-643.
    • (2002) DNA Repair (Amst) , vol.1 , pp. 629-643
    • Spivak, G.1    Itoh, T.2    Matsunaga, T.3    Nikaido, O.4    Hanawalt, P.5    Yamaizumi, M.6
  • 39
    • 0036363646 scopus 로고    scopus 로고
    • Mechanisms of transcription-coupled DNA repair
    • Svejstrup, J.Q. (2002) Mechanisms of transcription-coupled DNA repair. Nat Rev Mol Cell Biol 3: 21-29.
    • (2002) Nat Rev Mol Cell Biol , vol.3 , pp. 21-29
    • Svejstrup, J.Q.1
  • 40
    • 0027215760 scopus 로고
    • Effect of sequence, adduct type, and opposing lesions on the binding and repair of ultraviolet photodamage by DNA photolyase and (A)BC excinuclease
    • Svoboda, D.L., Smith, C.A., Taylor, J.S., and Sancar, A. (1993) Effect of sequence, adduct type, and opposing lesions on the binding and repair of ultraviolet photodamage by DNA photolyase and (A)BC excinuclease. J Biol Chem 268: 10694-10700.
    • (1993) J Biol Chem , vol.268 , pp. 10694-10700
    • Svoboda, D.L.1    Smith, C.A.2    Taylor, J.S.3    Sancar, A.4
  • 41
    • 0036334613 scopus 로고    scopus 로고
    • Genes of de novo pyrimidine biosynthesis from the hyperthermoacidophilic crenarchaeote Sulfolobus acidocaldarius: Novel organization in a bipolar operon
    • Thia-Toong, T.L., Roovers, M., Durbecq, V., Gigot, D., Glansdorff, N., and Charlier, D. (2002) Genes of de novo pyrimidine biosynthesis from the hyperthermoacidophilic crenarchaeote Sulfolobus acidocaldarius: novel organization in a bipolar operon. J Bacteriol 184: 4430-4441.
    • (2002) J Bacteriol , vol.184 , pp. 4430-4441
    • Thia-Toong, T.L.1    Roovers, M.2    Durbecq, V.3    Gigot, D.4    Glansdorff, N.5    Charlier, D.6
  • 42
    • 0025054962 scopus 로고
    • Nucleotide excision repair in Escherichia coli
    • Van Houten, B. (1990) Nucleotide excision repair in Escherichia coli. Microbiol Rev 54: 18-51.
    • (1990) Microbiol Rev , vol.54 , pp. 18-51
    • Van Houten, B.1
  • 43
    • 0030050017 scopus 로고    scopus 로고
    • Double mutants of Saccharomyces cerevisiae with alterations in global genome and transcription-coupled repair
    • Verhage, R.A., van Gool, A.J., de Groot, N., Hoeijmakers, J.H., van de Putte, P., and Brouwer, J. (1996) Double mutants of Saccharomyces cerevisiae with alterations in global genome and transcription-coupled repair. Mol Cell Biol 16: 496-502.
    • (1996) Mol Cell Biol , vol.16 , pp. 496-502
    • Verhage, R.A.1    van Gool, A.J.2    de Groot, N.3    Hoeijmakers, J.H.4    van de Putte, P.5    Brouwer, J.6
  • 44
    • 0027960988 scopus 로고
    • Analysis of repair of cyclobutane pyrimidine dimers and pyrimidine 6-4 pyrimidone photoproducts in transcriptionally active and inactive genes in Chinese hamster cells
    • Vreeswijk, M.P., van Hoffen, A., Westland, B.E., Vrieling, H., van Zeeland, A.A., and Mullenders, L.H. (1994) Analysis of repair of cyclobutane pyrimidine dimers and pyrimidine 6-4 pyrimidone photoproducts in transcriptionally active and inactive genes in Chinese hamster cells. J Biol Chem 269: 31858-31863.
    • (1994) J Biol Chem , vol.269 , pp. 31858-31863
    • Vreeswijk, M.P.1    van Hoffen, A.2    Westland, B.E.3    Vrieling, H.4    van Zeeland, A.A.5    Mullenders, L.H.6
  • 45
    • 0038202108 scopus 로고    scopus 로고
    • Archaeal DNA repair: Paradigms and puzzles
    • White, M.F. (2003) Archaeal DNA repair: paradigms and puzzles. Biochem Soc Trans 31: 690-693.
    • (2003) Biochem Soc Trans , vol.31 , pp. 690-693
    • White, M.F.1
  • 46
    • 0030961061 scopus 로고    scopus 로고
    • Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light
    • Wood, E.R., Ghane, F., and Grogan, D.W. (1997) Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light. J Bacteriol 179: 5693-5698.
    • (1997) J Bacteriol , vol.179 , pp. 5693-5698
    • Wood, E.R.1    Ghane, F.2    Grogan, D.W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.