메뉴 건너뛰기




Volumn 31, Issue 22, 2003, Pages 6409-6418

A DNA translocation motif in the bacterial transcription-repair coupling factor, Mfd

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; AMINO ACID; BACTERIAL DNA; ELONGATION FACTOR; HELICASE; RNA POLYMERASE;

EID: 0345531143     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg868     Document Type: Article
Times cited : (54)

References (34)
  • 1
    • 0024426244 scopus 로고
    • Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand
    • Mellon, I. and Hanawalt, P.C. (1989) Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature, 342, 95-98.
    • (1989) Nature , vol.342 , pp. 95-98
    • Mellon, I.1    Hanawalt, P.C.2
  • 2
    • 0023663101 scopus 로고
    • Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene
    • Mellon, I., Spivak, G. and Hanawalt, P.C. (1987) Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell, 51, 241-249.
    • (1987) Cell , vol.51 , pp. 241-249
    • Mellon, I.1    Spivak, G.2    Hanawalt, P.C.3
  • 3
    • 0036363646 scopus 로고    scopus 로고
    • Mechanisms of transcription-coupled DNA repair
    • Svejstrup, J.Q. (2002) Mechanisms of transcription-coupled DNA repair. Nature Rev. Mol. Cell. Biol., 3, 21-29.
    • (2002) Nature Rev. Mol. Cell. Biol. , vol.3 , pp. 21-29
    • Svejstrup, J.Q.1
  • 4
    • 0027421132 scopus 로고
    • Transcription-repair coupling and mutation frequency decline
    • Selby, C.P. and Sancar, A. (1993) Transcription-repair coupling and mutation frequency decline. J. Bacteriol., 175, 7509-7514.
    • (1993) J. Bacteriol. , vol.175 , pp. 7509-7514
    • Selby, C.P.1    Sancar, A.2
  • 5
    • 0027905034 scopus 로고
    • Molecular mechanism of transcription-repair coupling
    • Selby, C.P. and Sancar, A. (1993) Molecular mechanism of transcription-repair coupling. Science, 260, 53-58.
    • (1993) Science , vol.260 , pp. 53-58
    • Selby, C.P.1    Sancar, A.2
  • 6
    • 0028969976 scopus 로고
    • Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties
    • Selby, C.P. and Sancar, A. (1995) Structure and function of transcription-repair coupling factor. I. Structural domains and binding properties. J. Biol Chem., 270, 4882-4889.
    • (1995) J. Biol Chem. , vol.270 , pp. 4882-4889
    • Selby, C.P.1    Sancar, A.2
  • 7
    • 0028949551 scopus 로고
    • Structure and function of transcription-repair coupling factor. II. Catalytic properties
    • Selby, C.P. and Sancar, A. (1995) Structure and function of transcription-repair coupling factor. II. Catalytic properties. J. Biol. Chem., 270, 4890-4895.
    • (1995) J. Biol. Chem. , vol.270 , pp. 4890-4895
    • Selby, C.P.1    Sancar, A.2
  • 8
    • 0037077154 scopus 로고    scopus 로고
    • E.coli transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation
    • Park, J.S., Marr, M.T. and Roberts, J.W. (2002) E.coli transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation. Cell, 109, 757-767.
    • (2002) Cell , vol.109 , pp. 757-767
    • Park, J.S.1    Marr, M.T.2    Roberts, J.W.3
  • 9
    • 0027536870 scopus 로고
    • Transcript cleavage factors from E.coli
    • Borukhov, S., Sagitov, V. and Goldfarb, A. (1993) Transcript cleavage factors from E.coli. Cell, 72, 459-466.
    • (1993) Cell , vol.72 , pp. 459-466
    • Borukhov, S.1    Sagitov, V.2    Goldfarb, A.3
  • 10
    • 0034595208 scopus 로고    scopus 로고
    • Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement
    • Firman, K. and Szczelkun, M.D. (2000) Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement. EMBO J., 19, 2094-2102.
    • (2000) EMBO J. , vol.19 , pp. 2094-2102
    • Firman, K.1    Szczelkun, M.D.2
  • 12
    • 0035812836 scopus 로고    scopus 로고
    • Structural analysis of DNA replication fork reversal by RecG
    • Singleton, M.R., Scaife, S. and Wigley, D.B. (2001) Structural analysis of DNA replication fork reversal by RecG. Cell, 107, 79-89.
    • (2001) Cell , vol.107 , pp. 79-89
    • Singleton, M.R.1    Scaife, S.2    Wigley, D.B.3
  • 13
    • 0027397630 scopus 로고
    • Dissociation of synthetic Holliday junctions by E.coli RecG protein
    • Lloyd, R.G. and Sharples, G.J. (1993) Dissociation of synthetic Holliday junctions by E.coli RecG protein. EMBO J., 12, 17-22.
    • (1993) EMBO J. , vol.12 , pp. 17-22
    • Lloyd, R.G.1    Sharples, G.J.2
  • 14
    • 0037415719 scopus 로고    scopus 로고
    • A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins
    • Mahdi, A.A., Briggs, G.S., Sharples, G.J., Wen, Q. and Lloyd, R.G. (2003) A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins. EMBO J., 22, 724-734.
    • (2003) EMBO J. , vol.22 , pp. 724-734
    • Mahdi, A.A.1    Briggs, G.S.2    Sharples, G.J.3    Wen, Q.4    Lloyd, R.G.5
  • 16
    • 0028111946 scopus 로고
    • Thermal energy requirement for strand separation during transcription initiation: The effect of supercoiling and extended protein DNA contacts
    • Burns, H. and Minchin, S. (1994) Thermal energy requirement for strand separation during transcription initiation: the effect of supercoiling and extended protein DNA contacts. Nucleic Acids Res., 22, 3840-3845.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3840-3845
    • Burns, H.1    Minchin, S.2
  • 17
    • 0346569510 scopus 로고
    • Possible ideal lac operator: Escherichia coli lac operator-like sequences from eukaryotic genomes lack the central G X C pair
    • Simons, A., Tils, D., von Wilcken-Bergmann, B. and Muller-Hill, B. (1984) Possible ideal lac operator: Escherichia coli lac operator-like sequences from eukaryotic genomes lack the central G X C pair. Proc. Natl Acad. Sci. USA, 81, 1624-1628.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 1624-1628
    • Simons, A.1    Tils, D.2    von Wilcken-Bergmann, B.3    Muller-Hill, B.4
  • 18
    • 0027120805 scopus 로고
    • Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
    • Lodge, J., Fear, J., Busby, S., Gunasekaran, P. and Kamini, N.R. (1992) Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Microbiol. Lett., 74, 271-276.
    • (1992) FEMS Microbiol. Lett. , vol.74 , pp. 271-276
    • Lodge, J.1    Fear, J.2    Busby, S.3    Gunasekaran, P.4    Kamini, N.R.5
  • 19
    • 0037615001 scopus 로고    scopus 로고
    • Characterisation of the Escherichia coli mfd promoter
    • Stanley, L.K. and Savery, N.J. (2003) Characterisation of the Escherichia coli mfd promoter. Arch. Microbiol., 179, 381-385.
    • (2003) Arch. Microbiol. , vol.179 , pp. 381-385
    • Stanley, L.K.1    Savery, N.J.2
  • 20
    • 0025988826 scopus 로고
    • Random mutagenesis of gene-sized DNA molecules by use of PCR with Taq DNA polymerase
    • Zhou, Y.H., Zhang, X.P. and Ebright, R.H. (1991) Random mutagenesis of gene-sized DNA molecules by use of PCR with Taq DNA polymerase. Nucleic Acids Res., 19, 6052.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 6052
    • Zhou, Y.H.1    Zhang, X.P.2    Ebright, R.H.3
  • 21
    • 0032526956 scopus 로고    scopus 로고
    • Transcription activation at class II CRP-dependent promoters: Identification of determinants in the C-terminal domain of the RNA polymerase α subunit
    • Savery, N.J., Lloyd, G.S., Kainz, M., Gaal, T., Ross, W., Ebright, R.H., Gourse, R.L. and Busby, S.J.W. (1998) Transcription activation at class II CRP-dependent promoters: identification of determinants in the C-terminal domain of the RNA polymerase α subunit. EMBO J., 17, 3439-3447.
    • (1998) EMBO J. , vol.17 , pp. 3439-3447
    • Savery, N.J.1    Lloyd, G.S.2    Kainz, M.3    Gaal, T.4    Ross, W.5    Ebright, R.H.6    Gourse, R.L.7    Busby, S.J.W.8
  • 22
    • 0023645129 scopus 로고
    • Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base
    • Levin, J.R., Krummel, B. and Chamberlin, M.J. (1987) Isolation and properties of transcribing ternary complexes of Escherichia coli RNA polymerase positioned at a single template base. J. Mol. Biol., 196, 85-100.
    • (1987) J. Mol. Biol. , vol.196 , pp. 85-100
    • Levin, J.R.1    Krummel, B.2    Chamberlin, M.J.3
  • 23
    • 0024323026 scopus 로고
    • Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay
    • Fried, M.G. (1989) Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay. Electrophoresis, 10, 366-376.
    • (1989) Electrophoresis , vol.10 , pp. 366-376
    • Fried, M.G.1
  • 24
    • 0037177811 scopus 로고    scopus 로고
    • Biochemical characterization of the human RAD51 protein. I. ATP hydrolysis
    • Tombline, G. and Fishel, R. (2002) Biochemical characterization of the human RAD51 protein. I. ATP hydrolysis. J. Biol. Chem., 277, 14417-14425.
    • (2002) J. Biol. Chem. , vol.277 , pp. 14417-14425
    • Tombline, G.1    Fishel, R.2
  • 25
    • 0027213246 scopus 로고
    • Promoter-independent catabolite repression of the Bacillus subtilis gnt operon
    • Miwa, Y. and Fujita, Y. (1993) Promoter-independent catabolite repression of the Bacillus subtilis gnt operon. J. Biochem., 113, 665-671.
    • (1993) J. Biochem. , vol.113 , pp. 665-671
    • Miwa, Y.1    Fujita, Y.2
  • 26
    • 0028144755 scopus 로고
    • Analysis of Bacillus subtilis hut operon expression indicates that histidine-dependent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms: Regulation of transcription initiation and inhibition of histidine transport
    • Wray, L.V., Jr and Fisher, S.H. (1994) Analysis of Bacillus subtilis hut operon expression indicates that histidine-dependent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms: regulation of transcription initiation and inhibition of histidine transport. J. Bacteriol., 176, 5466-5473.
    • (1994) J. Bacteriol. , vol.176 , pp. 5466-5473
    • Wray Jr., L.V.1    Fisher, S.H.2
  • 27
    • 0031779321 scopus 로고    scopus 로고
    • Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons
    • Zalieckas, J.M., Wray, L.V., Jr, Ferson, A.E. and Fisher, S.H. (1998) Transcription-repair coupling factor is involved in carbon catabolite repression of the Bacillus subtilis hut and gnt operons. Mol. Microbiol., 27, 1031-1038.
    • (1998) Mol. Microbiol. , vol.27 , pp. 1031-1038
    • Zalieckas, J.M.1    Wray Jr., L.V.2    Ferson, A.E.3    Fisher, S.H.4
  • 28
    • 0343627965 scopus 로고    scopus 로고
    • SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon
    • Abo, T., Inada, T., Ogawa, K. and Aiba, H. (2000) SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon. EMBO J., 19, 3762-3769.
    • (2000) EMBO J. , vol.19 , pp. 3762-3769
    • Abo, T.1    Inada, T.2    Ogawa, K.3    Aiba, H.4
  • 29
    • 0345938313 scopus 로고
    • lac repressor blocks transcribing RNA polymerase and terminates transcription
    • Deuschle, U., Gentz, R. and Bujard, H. (1986) lac repressor blocks transcribing RNA polymerase and terminates transcription. Proc. Natl Acad. Sci. USA, 83, 4134-4137.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 4134-4137
    • Deuschle, U.1    Gentz, R.2    Bujard, H.3
  • 30
    • 0023338179 scopus 로고
    • lac repressor blocks in vivo transcription of lac control region DNA
    • Sellitti, M.A., Pavco, P.A. and Steege, D.A. (1987) lac repressor blocks in vivo transcription of lac control region DNA. Proc. Natl Acad. Sci. USA, 84, 3199-3203.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 3199-3203
    • Sellitti, M.A.1    Pavco, P.A.2    Steege, D.A.3
  • 31
    • 0029814614 scopus 로고    scopus 로고
    • High resolution mapping of E.coli transcription elongation complex in situ reveals protein interactions with the non-transcribed strand
    • Guerin, M., Leng, M. and Rahmouni, A.R. (1996) High resolution mapping of E.coli transcription elongation complex in situ reveals protein interactions with the non-transcribed strand. EMBO J., 15, 5397-5407.
    • (1996) EMBO J. , vol.15 , pp. 5397-5407
    • Guerin, M.1    Leng, M.2    Rahmouni, A.R.3
  • 32
    • 0029975889 scopus 로고    scopus 로고
    • Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator
    • Muller, J., Oehler, S. and Muller-Hill, B. (1996) Repression of lac promoter as a function of distance, phase and quality of an auxiliary lac operator. J. Mol. Biol., 257, 21-29.
    • (1996) J. Mol. Biol. , vol.257 , pp. 21-29
    • Muller, J.1    Oehler, S.2    Muller-Hill, B.3
  • 33
    • 0026708877 scopus 로고
    • Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties
    • Krummel, B. and Chamberlin, M.J. (1992) Structural analysis of ternary complexes of Escherichia coli RNA polymerase. Individual complexes halted along different transcription units have distinct and unexpected biochemical properties. J. Mol. Biol., 225, 221-237.
    • (1992) J. Mol. Biol. , vol.225 , pp. 221-237
    • Krummel, B.1    Chamberlin, M.J.2
  • 34
    • 0037716599 scopus 로고    scopus 로고
    • Role of E.coli transcription-repair coupling factor Mfd in Nun-mediated transcription termination
    • Washburn, R.S., Wang, Y. and Gottesman, M.E. (2003) Role of E.coli transcription-repair coupling factor Mfd in Nun-mediated transcription termination. J. Mol. Biol., 329, 655-662.
    • (2003) J. Mol. Biol. , vol.329 , pp. 655-662
    • Washburn, R.S.1    Wang, Y.2    Gottesman, M.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.