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Volumn 31, Issue 21, 2003, Pages 6127-6138

Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus

Author keywords

[No Author keywords available]

Indexed keywords

CYCLOBUTANE; DACTINOMYCIN; DNA BINDING PROTEIN; PYRIMIDINE DIMER;

EID: 0344442400     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkg831     Document Type: Article
Times cited : (32)

References (43)
  • 1
    • 0032718408 scopus 로고    scopus 로고
    • Radiation inducible DNA repair processes in eukaryotes
    • Eckardt-Schupp,F. and Klaus,C. (1999) Radiation inducible DNA repair processes in eukaryotes. Biochimie, 81, 161-171.
    • (1999) Biochimie , vol.81 , pp. 161-171
    • Eckardt-Schupp, F.1    Klaus, C.2
  • 2
    • 0033118354 scopus 로고    scopus 로고
    • Molecular mechanism of nucleotide excision repair
    • deLaat,W.L., Jaspers,N.G.J. and Hoeijmakers,J.H.J. (1999) Molecular mechanism of nucleotide excision repair. Genes Dev., 13, 768-785.
    • (1999) Genes Dev. , vol.13 , pp. 768-785
    • deLaat, W.L.1    Jaspers, N.G.J.2    Hoeijmakers, J.H.J.3
  • 3
    • 0021891881 scopus 로고
    • Inducible DNA repair systems
    • Walker,G.C. (1985) Inducible DNA repair systems. Annu. Rev. Biochem., 54, 425-457.
    • (1985) Annu. Rev. Biochem. , vol.54 , pp. 425-457
    • Walker, G.C.1
  • 4
    • 0037172948 scopus 로고    scopus 로고
    • Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents
    • Birrell,G.W., Brown,J.A., Wu,H.I., Giaever,G., Chu,A.M., Davis,R.W. and Brown,J.M. (2002) Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Proc. Natl Acad Sci. USA, 99, 8778-8783.
    • (2002) Proc. Natl Acad Sci. USA , vol.99 , pp. 8778-8783
    • Birrell, G.W.1    Brown, J.A.2    Wu, H.I.3    Giaever, G.4    Chu, A.M.5    Davis, R.W.6    Brown, J.M.7
  • 5
    • 0037022571 scopus 로고    scopus 로고
    • Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays
    • Sesto,A., Navarro,M., Burslem,F. and Jorcano,J.L.(2002) Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays. Proc. Natl Acad. Sci. USA, 99, 2965-2970.
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 2965-2970
    • Sesto, A.1    Navarro, M.2    Burslem, F.3    Jorcano, J.L.4
  • 6
    • 0030785521 scopus 로고    scopus 로고
    • Enhancement of DNA repair in human skin cells by thymidine dinucleotides: Evidence for a p53-mediated mammalian SOS response
    • Eller,M.S., Maeda,T., Magnoni,C., Atwal,D. and Gilchrest,B.A. (1997) Enhancement of DNA repair in human skin cells by thymidine dinucleotides: evidence for a p53-mediated mammalian SOS response. Proc. Natl Acad. Sci. USA, 94, 12627-12632.
    • (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12627-12632
    • Eller, M.S.1    Maeda, T.2    Magnoni, C.3    Atwal, D.4    Gilchrest, B.A.5
  • 7
    • 0037073801 scopus 로고    scopus 로고
    • UV stimulation of nucleophosmin/B23 expression is an immediate-early gene response induced by damaged DNA
    • Wu,M.H. and Yung,B.Y. (2002) UV stimulation of nucleophosmin/B23 expression is an immediate-early gene response induced by damaged DNA. J. Biol. Chem., 277, 48234-48240.
    • (2002) J. Biol. Chem. , vol.277 , pp. 48234-48240
    • Wu, M.H.1    Yung, B.Y.2
  • 8
    • 0033105094 scopus 로고    scopus 로고
    • Conserved domains in DNA repair proteins and evolution of repair systems
    • Aravind,L., Walker,D.R. and Koonin,E.V. (1999) Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res., 27, 1223-1242.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 1223-1242
    • Aravind, L.1    Walker, D.R.2    Koonin, E.V.3
  • 9
    • 0035067057 scopus 로고    scopus 로고
    • Mechanism and regulation of transcription in archaea
    • Bell,S.D. and Jackson,S.P. (2001) Mechanism and regulation of transcription in archaea. Curr. Opin. Microbiol., 4, 208-213.
    • (2001) Curr. Opin. Microbiol. , vol.4 , pp. 208-213
    • Bell, S.D.1    Jackson, S.P.2
  • 10
    • 0036431635 scopus 로고    scopus 로고
    • Molecular biology of extremophiles: Recent progress on the hyperthermophilic archaeon Sulfolobus
    • Ciaramella,M., Pisani,F.M. and Rossi,M. (2002) Molecular biology of extremophiles: recent progress on the hyperthermophilic archaeon Sulfolobus. Antonie Van Leeuwenhoek, 81, 85-97.
    • (2002) Antonie van Leeuwenhoek , vol.81 , pp. 85-97
    • Ciaramella, M.1    Pisani, F.M.2    Rossi, M.3
  • 12
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet,F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res., 16, 10881-10890.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 13
    • 0031112078 scopus 로고    scopus 로고
    • The use of RNA probes for the analysis of gene expression
    • Belin,D. (1997) The use of RNA probes for the analysis of gene expression. Mol. Biotechnol., 7, 153-163.
    • (1997) Mol. Biotechnol. , vol.7 , pp. 153-163
    • Belin, D.1
  • 14
    • 0030956537 scopus 로고    scopus 로고
    • DNA topology in hyperthermophilic archaea: Reference states and their variation with growth phase, growth temperature and temperature stresses
    • Lopez-Garcia,P. and Forterre,P. (1997) DNA topology in hyperthermophilic archaea: reference states and their variation with growth phase, growth temperature and temperature stresses. Mol. Microbiol., 23, 1267-1279.
    • (1997) Mol. Microbiol. , vol.23 , pp. 1267-1279
    • Lopez-Garcia, P.1    Forterre, P.2
  • 15
    • 0035907261 scopus 로고    scopus 로고
    • Cyclobutane pyrimidine dimers and bulky chemical DNA adducts are efficiently repaired in both strands of either transcriptionally active or promoter-deleted APRT gene
    • Zheng,Y., Pao,A., Adair,G.M. and Tang,M. (2001) Cyclobutane pyrimidine dimers and bulky chemical DNA adducts are efficiently repaired in both strands of either transcriptionally active or promoter-deleted APRT gene. J. Biol. Chem., 276, 16786-16796.
    • (2001) J. Biol. Chem. , vol.276 , pp. 16786-16796
    • Zheng, Y.1    Pao, A.2    Adair, G.M.3    Tang, M.4
  • 16
    • 0028956151 scopus 로고
    • A gene encoding a putative membrane protein homologous to the major facilitator superfamily of transporters maps upstream of the beta-glycosidase gene in the archaeon Sulfolobus solfataricus
    • Prisco,A., Moracci,M., Rossi,M. and Ciaramella,M. (1995) A gene encoding a putative membrane protein homologous to the major facilitator superfamily of transporters maps upstream of the beta-glycosidase gene in the archaeon Sulfolobus solfataricus. J. Bacteriol., 177, 1614-1619.
    • (1995) J. Bacteriol. , vol.177 , pp. 1614-1619
    • Prisco, A.1    Moracci, M.2    Rossi, M.3    Ciaramella, M.4
  • 17
    • 0030961061 scopus 로고    scopus 로고
    • Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light
    • Wood,E.R., Ghane,F. and Grogan,D.W. (1997) Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light. J. Bacteriol., 179, 5693-5698.
    • (1997) J. Bacteriol. , vol.179 , pp. 5693-5698
    • Wood, E.R.1    Ghane, F.2    Grogan, D.W.3
  • 18
    • 0037772376 scopus 로고    scopus 로고
    • An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA
    • Roberts,J.A., Bell,S.D. and White,M.F. (2003) An archaeal XPF repair endonuclease dependent on a heterotrimeric PCNA. Mol. Microbiol., 48, 361-371.
    • (2003) Mol. Microbiol. , vol.48 , pp. 361-371
    • Roberts, J.A.1    Bell, S.D.2    White, M.F.3
  • 19
    • 0038202108 scopus 로고    scopus 로고
    • Archaeal DNA repair: Paradigms and puzzles
    • White,M.F. (2003) Archaeal DNA repair: paradigms and puzzles. Biochem. Soc. Trans., 31, 690-693.
    • (2003) Biochem. Soc. Trans. , vol.31 , pp. 690-693
    • White, M.F.1
  • 20
    • 0037040541 scopus 로고    scopus 로고
    • Molecular chaperones in the cytosol: From nascent chain to folded protein
    • Hartl,F.U. and Hayer-Hartl,M. (2002) Molecular chaperones in the cytosol: from nascent chain to folded protein. Science, 295, 1852-1858.
    • (2002) Science , vol.295 , pp. 1852-1858
    • Hartl, F.U.1    Hayer-Hartl, M.2
  • 21
    • 0032538537 scopus 로고    scopus 로고
    • Newly discovered archaebacterial flap endonucleases show a structure-specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1
    • Hosfield,D.J., Frank,G., Weng,Y., Tainer,J.A. and Shen,B. (1998) Newly discovered archaebacterial flap endonucleases show a structure-specific mechanism for DNA substrate binding and catalysis resembling human flap endonuclease-1. J. Biol. Chem., 273, 27154-27361.
    • (1998) J. Biol. Chem. , vol.273 , pp. 27154-27361
    • Hosfield, D.J.1    Frank, G.2    Weng, Y.3    Tainer, J.A.4    Shen, B.5
  • 22
    • 0037251411 scopus 로고    scopus 로고
    • A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Dionne,I., Nookala,R.K., Jackson,S.P., Doherty,A.J. and Bell,S.D. (2003) A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus. Mol. Cell, 11, 275-282.
    • (2003) Mol. Cell , vol.11 , pp. 275-282
    • Dionne, I.1    Nookala, R.K.2    Jackson, S.P.3    Doherty, A.J.4    Bell, S.D.5
  • 23
    • 0037022891 scopus 로고    scopus 로고
    • ER dislocation: Cdc48p/p97 gets into the AAAct
    • Lord,J.M., Ceriotti,A. and Roberts,L.M. (2002) ER dislocation: Cdc48p/p97 gets into the AAAct. Curr. Biol., 12, R182-R184.
    • (2002) Curr. Biol. , vol.12
    • Lord, J.M.1    Ceriotti, A.2    Roberts, L.M.3
  • 24
    • 0028140593 scopus 로고
    • SAV, an archaebacterial gene with extensive homology to a family of highly conserved eukaryotic ATPases
    • Confalonieri,F., Marsault,J. and Duguet,M. (1994) SAV, an archaebacterial gene with extensive homology to a family of highly conserved eukaryotic ATPases. J. Mol. Biol., 235, 396-401.
    • (1994) J. Mol. Biol. , vol.235 , pp. 396-401
    • Confalonieri, F.1    Marsault, J.2    Duguet, M.3
  • 25
    • 0035431205 scopus 로고    scopus 로고
    • Archaeal RecA homologues: Different response to DNA-damaging agents in mesophilic and thermophilic Archaea
    • Reich,C.I., McNeil,L.K., Brace,J.L., Brucker,J.K. and Olsen,G.J. (2001) Archaeal RecA homologues: different response to DNA-damaging agents in mesophilic and thermophilic Archaea. Extremophiles, 5, 265-275.
    • (2001) Extremophiles , vol.5 , pp. 265-275
    • Reich, C.I.1    McNeil, L.K.2    Brace, J.L.3    Brucker, J.K.4    Olsen, G.J.5
  • 26
    • 0036166206 scopus 로고    scopus 로고
    • When repair meets chromatin. First in series on chromatin dynamics
    • Green,C.M. and Almouzni,G. (2002) When repair meets chromatin. First in series on chromatin dynamics. EMBO Rep., 3, 28-33.
    • (2002) EMBO Rep. , vol.3 , pp. 28-33
    • Green, C.M.1    Almouzni, G.2
  • 27
    • 0036094122 scopus 로고    scopus 로고
    • Nucleotide excision repair and chromatin remodeling
    • Ura,K. and Hayes,J.J. (2002) Nucleotide excision repair and chromatin remodeling. Eur. J. Biochem., 269, 2288-2293.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 2288-2293
    • Ura, K.1    Hayes, J.J.2
  • 28
    • 0036890204 scopus 로고    scopus 로고
    • Holding it together: Chromatin in the Archaea
    • White,M.F. and Bell,S.D. (2002) Holding it together: chromatin in the Archaea. Trends Genet., 18, 621-626.
    • (2002) Trends Genet. , vol.18 , pp. 621-626
    • White, M.F.1    Bell, S.D.2
  • 29
    • 2642690670 scopus 로고    scopus 로고
    • In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth
    • Lopez-Garcia,P., Knapp,S. Ladenstein,R. and Forterre,P. (1998) In vitro DNA binding of the archaeal protein Sso7d induces negative supercoiling at temperatures typical for thermophilic growth. Nucleic Acids Res., 26, 2322-2328.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2322-2328
    • Lopez-Garcia, P.1    Knapp, S.2    Ladenstein, R.3    Forterre, P.4
  • 30
    • 0037096967 scopus 로고    scopus 로고
    • DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus
    • Napoli,A., Zivanovic,Y., Bocs,C., Buhler,C., Rossi,M., Forterre,P. and Ciaramella,M. (2002) DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus. Nucleic Acids Res., 30, 2656-2662.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2656-2662
    • Napoli, A.1    Zivanovic, Y.2    Bocs, C.3    Buhler, C.4    Rossi, M.5    Forterre, P.6    Ciaramella, M.7
  • 31
    • 0037023326 scopus 로고    scopus 로고
    • The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation
    • Bell,S.D., Botting,C.H., Wardleworth,B.N., Jackson,S.P. and White,M.F. (2002) The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation. Science, 296, 148-151.
    • (2002) Science , vol.296 , pp. 148-151
    • Bell, S.D.1    Botting, C.H.2    Wardleworth, B.N.3    Jackson, S.P.4    White, M.F.5
  • 32
    • 0032985667 scopus 로고    scopus 로고
    • An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter
    • Napoli,A., van der Oost,J., Sensen,C.W., Charlebois,R.L., Rossi,M. and Ciaramella,M. (1999) An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter. J. Bacteriol., 181, 1474-1480.
    • (1999) J. Bacteriol. , vol.181 , pp. 1474-1480
    • Napoli, A.1    van der Oost, J.2    Sensen, C.W.3    Charlebois, R.L.4    Rossi, M.5    Ciaramella, M.6
  • 33
    • 0034644711 scopus 로고    scopus 로고
    • Mechanism of autoregulation by an archaeal transcriptional repressor
    • Bell,S.D. and Jackson,S.P. (2000) Mechanism of autoregulation by an archaeal transcriptional repressor. J. Biol. Chem., 275, 31624-31629.
    • (2000) J. Biol. Chem. , vol.275 , pp. 31624-31629
    • Bell, S.D.1    Jackson, S.P.2
  • 34
    • 0035815657 scopus 로고    scopus 로고
    • A novel member of the bacterial-archaeal regulator family is a nonspecific DNA-binding protein and induces positive supercoiling
    • Napoli,A., Kvaratskelia,M., White,M.F., Rossi,M. and Ciaramella,M. (2001) A novel member of the bacterial-archaeal regulator family is a nonspecific DNA-binding protein and induces positive supercoiling. J. Biol. Chem, 276, 10745-10752.
    • (2001) J. Biol. Chem. , vol.276 , pp. 10745-10752
    • Napoli, A.1    Kvaratskelia, M.2    White, M.F.3    Rossi, M.4    Ciaramella, M.5
  • 35
    • 0035865799 scopus 로고    scopus 로고
    • Identification and properties of the crenarchaeal single-stranded DNA binding protein from Sulfolobus solfataricus
    • Wadsworth,R.I. and White,M.F. (2001) Identification and properties of the crenarchaeal single-stranded DNA binding protein from Sulfolobus solfataricus. Nucleic Acids Res., 29, 914-920.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 914-920
    • Wadsworth, R.I.1    White, M.F.2
  • 36
    • 0033522915 scopus 로고    scopus 로고
    • The transcriptional inhibitors, actinomycin D and alpha-amanitin, activate the HIV-1 promoter and favor phosphorylation of the RNA polymerase II C-terminal domain
    • Cassè, C., Giannoni,F., Nguyen,V.T., Dubois,M.F. and Bensaude,O. (1999) The transcriptional inhibitors, actinomycin D and alpha-amanitin, activate the HIV-1 promoter and favor phosphorylation of the RNA polymerase II C-terminal domain. J. Biol. Chem., 274, 16097-16106.
    • (1999) J. Biol. Chem. , vol.274 , pp. 16097-16106
    • Cassè, C.1    Giannoni, F.2    Nguyen, V.T.3    Dubois, M.F.4    Bensaude, O.5
  • 37
    • 0033590624 scopus 로고    scopus 로고
    • Inhibition of RNA polymerase II as a trigger for the p53 response
    • Ljungman,M., Zhang,F., Chen,F., Rainbow,A.J. and McKay,B. (1999) Inhibition of RNA polymerase II as a trigger for the p53 response. Oncogene, 18, 583-592.
    • (1999) Oncogene , vol.18 , pp. 583-592
    • Ljungman, M.1    Zhang, F.2    Chen, F.3    Rainbow, A.J.4    McKay, B.5
  • 38
    • 0035112263 scopus 로고    scopus 로고
    • A comparison of the effects of DNA-damaging agents and biotic elicitors on the induction of plant defense genes, nuclear distortion and cell death
    • JunghaeChoi,J., Klosterman,S.J. and Hadwiger,L.A. (2001) A comparison of the effects of DNA-damaging agents and biotic elicitors on the induction of plant defense genes, nuclear distortion and cell death. Plant Physiol., 125, 752-762.
    • (2001) Plant Physiol. , vol.125 , pp. 752-762
    • JunghaeChoi, J.1    Klosterman, S.J.2    Hadwiger, L.A.3
  • 39
    • 0036716945 scopus 로고    scopus 로고
    • Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus
    • Bini,E., Dikshit,V., Dirksen,K., Drozda,M. and Blum,P. (2002) Stability of mRNA in the hyperthermophilic archaeon Sulfolobus solfataricus. RNA, 8, 1129-1136.
    • (2002) RNA , vol.8 , pp. 1129-1136
    • Bini, E.1    Dikshit, V.2    Dirksen, K.3    Drozda, M.4    Blum, P.5
  • 40
    • 0032557562 scopus 로고    scopus 로고
    • Involvement of molecular chaperonins in nucleotide excision repair. Dnak leads to increased thermal stability of UvrA, catalytic UvrB loading, enhanced repair and increased UV resistance
    • Zou,Y., David,J.D.J. and Van Houten,B. (1998) Involvement of molecular chaperonins in nucleotide excision repair. Dnak leads to increased thermal stability of UvrA, catalytic UvrB loading, enhanced repair and increased UV resistance. J. Biol. Chem., 273, 12887-12892.
    • (1998) J. Biol. Chem. , vol.273 , pp. 12887-12892
    • Zou, Y.1    David, J.D.J.2    Van Houten, B.3
  • 41
    • 12244309062 scopus 로고    scopus 로고
    • Proteolysis of a nucleotide excision repair protein by the 26 S proteasome
    • Lommel,L., Ortolan,T., Chen,L., Madura,K. and Sweder,K.S. (2002) Proteolysis of a nucleotide excision repair protein by the 26 S proteasome. Curr. Genet., 42, 9-20.
    • (2002) Curr. Genet. , vol.42 , pp. 9-20
    • Lommel, L.1    Ortolan, T.2    Chen, L.3    Madura, K.4    Sweder, K.S.5
  • 42
    • 0029886852 scopus 로고    scopus 로고
    • The unique DNA topology and DNA topoisomerases of hyperthermophilic archaea
    • Forterre,P., Bergerat,A. and Lopez-Garcia,P. (1996) The unique DNA topology and DNA topoisomerases of hyperthermophilic archaea. FEMS Microbiol. Rev., 18, 237-248.
    • (1996) FEMS Microbiol. Rev. , vol.18 , pp. 237-248
    • Forterre, P.1    Bergerat, A.2    Lopez-Garcia, P.3
  • 43
    • 0037450761 scopus 로고    scopus 로고
    • p53 is a chromatin accessibility factor for nucleotide excision repair of DNA damage
    • Rubbi,C. and Milner,P. (2003) p53 is a chromatin accessibility factor for nucleotide excision repair of DNA damage. EMBO J., 22, 975-986.
    • (2003) EMBO J. , vol.22 , pp. 975-986
    • Rubbi, C.1    Milner, P.2


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