Molecular architecture of the glucose 1-phosphate site in ADP-glucose pyrophosphorylases

Journal of Biological Chemistry

Volumn 281, Issue 52, 2006, Pages 40473-40484

  Bejar, Clarisa Maria ^a   Jin, Xiangshu ^a,b   Ballicora, Miguel Angel ^a,c   Preiss, Jack ^a  

^a Michigan State University   (United States)

^b Och Spine at New York Presbyterian Hospitals   (United States)

^c LOYOLA UNIVERSITY CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; BINDING ENERGY; BIOCATALYSTS; BIOSYNTHESIS; ENZYMES; ESCHERICHIA COLI; HYDROPHOBICITY; MOLECULAR STRUCTURE; PHOSPHATES;

BACTERIAL GLYCOGEN; PSEUDOMONAS AERUGINOSA; PYROPHOSPHORYLASE;

GLUCOSE;

GLUCOSE 1 PHOSPHATE; GLUCOSE 1 PHOSPHATE ADENYLYLTRANSFERASE;

ARTICLE; CONTROLLED STUDY; ESCHERICHIA COLI; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN PURIFICATION; PSEUDOMONAS AERUGINOSA; SALMONELLA TYPHI;

AMINO ACID SEQUENCE; ESCHERICHIA COLI PROTEINS; GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE; GLUCOSEPHOSPHATES; KINETICS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; PSEUDOMONAS AERUGINOSA; SALMONELLA TYPHI;

EID: 33845982238     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M607088200     Document Type: Article

References (54)

1. Preiss, J. (1984) Annu. Rev. Microbiol. 38, 419-458
2. Iglesias, A. A., and Preiss, J. (1992) Biochem. Educ. 20, 196-203
3. Ghosh, H. P., and Preiss, J. (1966) J. Biol. Chem. 241, 4491-4504
4. Preiss, J., and Sivak, M. N. (1998) in Comprehensive Natural Products Chemistry: Starch and Glycogen Biosynthesis (Pinto, B. M., ed) Vol. 3, pp. 441-495, Pergamon Press, Oxford
5. Ballicora, M. A., Iglesias, A. A., and Preiss, J. (2003) Microbiol. Mol. Biol. Rev. 67, 213-225
6. Ballicora, M. A., Iglesias, A. A., and Preiss, J. (2004) Photosynth. Res. 79, 1-24
7. Takata, H., Takaha, T., Okada, S., Takagi, M., and Imanaka, T. (1997) J. Bacteriol. 179, 4689-4698
8. Preiss, J., and Romeo, T. (1994) Prog. Nucleic Acid Res. Mol. Biol. 47, 299-329
9. Sivak, M. N., and Preiss, J. (1998) in Advances in Food and Nutrition Research (Taylor, S. L., ed) Vol. 41, pp. 47-49, Academic Press, Inc., San Diego, CA
10. Nakata, P. A., Greene, T. W., Anderson, J. M., Smith-White, B. J., Okita, T. W., and Preiss, J. (1991) Plant Mol. Biol. 17, 1089-1093
11. Smith-White, B. J., and Preiss, J. (1992) J. Mol. Evol. 34, 449-464
12. Ballicora, M. A., Dubay, J. R., Devillers, C. H., and Preiss, J. (2005) J. Biol. Chem. 280, 10189-10195
13. Iglesias, A. A., Kakefuda, G., and Preiss, J. (1991) Plant Physiol. 97, 1187-1195
14. Jin, X., Ballicora, M. A., Preiss, J., and Geiger, J. H. (2005) EMBO J. 694-704
15. Lee, Y. M., and Preiss, J. (1986) J. Biol. Chem. 261, 1058-1064
16. Hill, M. A., Kaufmann, K., Otero, J., and Preiss, J. (1991) J. Biol. Chem. 266, 12455-12460
17. Fu, Y., Ballicora, M. A., and Preiss, J. (1998) Plant Physiol. 117, 989-996
18. Blankenfeldt, W., Asuncion, M., Lam, J. S., and Naismith, J. H. (2000) EMBO J. 19, 6652-6663
19. Koropatkin, N. M., and Holden, H. M. (2004) J. Biol. Chem. 279, 44023-44029
20. Fiser, A., Do, R. K., and Sali, A. (2000) Protein Sci. 1753-1773
21. Marti-Renom, M. A., Stuart, A., Fiser, A., Sánchez, R., Melo, F., and Sali, A. (2000) Annu. Rev. Biophys. Biomol. Struct. 291-325
22. Sali, A., and Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815
23. Luthy, R., Bowie, J., and Eisenberg, D. (1992) Nature 356, 83-85
24. Bowie, J., Luthy, R., and Eisenberg, D. (1991) Science 253, 164-170
25. Baecker, P. A., Furlong, C. E., and Preiss, J. (1983) J. Biol. Chem. 258, 5084-5088
26. Uttaro, A. D., and Ugalde, R. A. (1994) Gene (Amst.) 150, 117-122
27. Palenik, B., Brahamsha, B., Larimer, F. W., Land, M., Hauser, L., Chain, P., Lamerdin, J., Regala, W., Allen, E. E., McCarren, J., Paulsen, I., Dufresne, A., Partensky, F., Webb, E. A., and Waterbury, J. (2003) Nature 424, 1037-1042
28. Nelson, K. E., Clayton, R. A., Gill, S. R., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Nelson, W. C., Ketchum, K. A., McDonald, L., Utterback, T. R., Malek, J. A., Linher, K. D., Garrett, M. M., Stewart, A. M., Cotton, M. D., Pratt, M. S., Phillips, C. A., Richardson, D., Heidelberg, J., Sutton, G. G., Fleischmann, R. D., Eisen, J. A., White, O., Salzberg, S. L., Smith, H. O., Venter, J. C., and Fraser, C. M. (1999) Nature 399, 323-329
29. Tettelin, H., Nelson, K. E., Paulsen, I. T., Eisen, J. A., Read, T. D., Peterson, S., Heidelberg, J., DeBoy, R. T., Haft, D. H., Dodson, R. J., Durkin, A. S., Gwinn, M., Kolonay, J. F., Nelson, W. C., Peterson, J. D., Umayam, L. A., White, O., Salzberg, S. L., Lewis, M. R., Radune, D., Holtzapple, E., Khouri, H., Wolf, A. M., Utterback, T. R., Hansen, C. L., McDonald, L. A., Feldblyum, T. V., Angiuoli, S., Dickinson, T., Hickey, E. K., Holt, I. E., Loftus, B. J., Yang, F., Smith, H. O., Venter, J. C., Dougherty, B. A., Morrison, D. A., Hollingshead, S. K., and Fraser, C. M. (2001) Science 293, 498-506
30. Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Clayton, R. A., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L., Gill, S. R., Nelson, K. E., Read, T. D., Tettelin, H., Richardson, D., Ermolaeva, M. D., Vamathevan, J., Bass, S., Qin, H., Dragoi, I., Sellers, P., McDonald, L., Utterback, T., Fleishmann, R. D., Nierman, W. C., White, O., Salzberg, S. L., Smith, H. O., Colwell, R. R., Mekalanos, J. J., Venter, J. C., and Fraser, C. M. (2000) Nature 406, 477-483
31. Fleischmann, R. D., Alland, D., Eisen, J. A., Carpenter, L., White, O., Peterson, J. D., DeBoy, R. T., Dodson, R. J., Gwinn, M. L., Haft, D. H., Hickey, E. K., Kolonay, J. F., Nelson, W. C., Umayam, L. A., Ermolaeva, M. D., Salzberg, S. L., Delcher, A., Utterback, T. R., Weidman, J. F., Khouri, H. M., Gill, J., Mikula, A., Bishai, W., Jacobs, W. R., Jr., Venter, J. C., and Fraser, C. M. (2002) J. Bacteriol. 184, 5479-5490
32. White, O., Eisen, J. A., Heidelberg, J., Hickey, E. K., Peterson, D., Dodson, R. J., Haft, D. H., Gwinn, M., Nelson, W. C., Richardson, D., Moffat, K. S., Qin, H., Jiang, L., Pamphile, W., Crosby, M., Sheng, M., Vamathevan, J., Lam, P., McDonald, L., Utterback, T., Zalewski, C., Makarova, K. S., Aravind, L., Daly, M. J., Minton, K. W., Fleischmann, R. D., Ketchum, K. A., Nelson, K. E., Salzberg, S. L., Smith, H. O., Venter, J. C., and Fraser, C. M. (1999) Science 286, 1571-1577
33. Charng, Y. Y., Kakefuda, G., Iglesias, A. A., Buikema, W. J., and Preiss, J. (1992) Plant Mol. Biol. 20, 37-47
34. Wang, S. M., Lue, W. L., Yu, T. S., Long, J. H., Wang, C. N., Eimert, K., and Chen, J. (1998) Plant J. 13, 63-70
35. Ballicora, M. A., Laughlin, M. J., Fu, Y., Okita, T. W., Barry, G. F., and Preiss, J. (1995) Plant Physiol. 109, 245-251
36. Hannah, L. C., Shaw, J. R., Giroux, M. J., Reyss, A., Prioul, J. L., Bae, J. M., and Lee, J. Y. (2001) Plant Physiol. 127, 173-183
37. Zabawinski, C., Van Den Koornhuyse, N., D'Hulst, C., Schlichting, R., Giersch, C., Delrue, B., Lacroix, J.-M., Preiss, J., and Ball, S. (2001) J. Bacteriol. 183, 1069-1077
38. Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K., and Pease, L. R. (1989) Gene (Amst.) 15, 51-59
39. Bejar, C. M., Ballicora, M. A., Iglesias, A. A., and Preiss, J. (2006) Biochem. Biophys. Res. Commun. 343, 216-221
40. Frueauf, J. B., Ballicora, M. A., and Preiss, J. (2001) J. Biol. Chem. 276, 46319-46325
41. Morell, M. K., Bloom, M., Knowles, V., and Preiss, J. (1987) Plant Physiol. 85, 182-187
42. Yep, A., Bejar, C. M., Ballicora, M. A., Dubay, J. R., Iglesias, A. A., and Preiss, J. (2004) Anal. Biochem. 324, 52-59
43. Sánchez, R., and Sali, A. (2000) in Protein Structure Prediction: Methods and Protocols (Webster, D. M., ed) Vol. 143, 97-129, Humana Press Inc., Totowa, NJ
44. Sánchez, R., and Sali, A. (1997) Curr. Opin. Struct. Biol. 7, 206-214
45. Tramontano, A. (1998) Methods (San Diego) 14, 293-300
46. Bejar, C. M., Ballicora, M. A., Gómez Casati, D. F., Iglesias, A. A., and Preiss, J. (2004) FEBS Lett. 573, 99-104
47. Rossmann, M. G., Liljas, A., Branden, C.-I., and Bansazak, L. J. (1975) in The Enzymes (Boyer, P. D., ed) Vol. 11, pp. 61-102, Academic Press, New York
48. Kumar, A., Tanaka, T., Lee, Y. M., and Preiss, J. (1988) J. Biol. Chem. 263, 14634-14639
49. Wu, M. X., and Preiss, J. (2001) Arch. Biochem. Biophys. 389, 159-165
50. Vyas, N. K. (1991) Curr. Opin. Struct. Biol. 1, 732-740
51. Taroni, C., Jones, S., and Thornton, J. M. (2000) Protein Eng. Des. Sel. 13, 89-98
52. Sujatha, M. S., Sasidhar, Y. U., and Balaji, P. V. (2004) Protein Sci. 13, 2502-2514
53. Haugen, T. H., and Preiss, J. (1979) J. Biol. Chem. 254, 127-136
54. Vogt, G., Woell, S., and Argos, P. (1997) J. Mol. Biol. 269, 631-643