Transient state kinetics of transcription elongation by T7 RNA polymerase

Journal of Biological Chemistry

Volumn 281, Issue 47, 2006, Pages 35677-35685

  Anand, Vasanti Subramanian ^a   Patel, Smita S ^a  

^a RUTGERS ROBERT WOOD JOHNSON MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOCIATION; DNA; ENZYME KINETICS; ISOMERIZATION; NUCLEIC ACIDS; RATE CONSTANTS; RNA;

PROMOTER-FREE SUBSTRATES; PROMOTER-INDEPENDENT ELONGATION; PYROPHOSPHOROLYSIS REACTION; RNA POLYMERASE (RNAP);

ENZYMES;

NUCLEOSIDE MONOPHOSPHATE KINASE; NUCLEOTIDE; PRIMER RNA; PYROPHOSPHATE; RNA POLYMERASE; TRANSCRIPTION ELONGATION FACTOR;

ARTICLE; BACTERIOPHAGE T7; CATALYSIS; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; CRYSTALLOGRAPHY; DISSOCIATION CONSTANT; ENERGY; EQUILIBRIUM CONSTANT; ISOMERIZATION; KINETICS; NONHUMAN; NONPHOTOCHEMICAL QUENCHING; PHOSPHORYLATION; PRIORITY JOURNAL; RNA SYNTHESIS;

BACTERIOPHAGE T7; BASE SEQUENCE; COLLODION; DIPHOSPHATES; DNA-DIRECTED RNA POLYMERASES; ESCHERICHIA COLI; ETHANOLAMINES; KINETICS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; PROTEIN CONFORMATION; STRUCTURE-ACTIVITY RELATIONSHIP; TEMPERATURE; TRANSCRIPTION, GENETIC; VIRAL PROTEINS;

EID: 33845967859     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M608180200     Document Type: Article

References (43)

1. Jeruzalmi, D., and Steitz, T. A. (1998) EMBO J. 17, 4101-4113
2. Temiakov, D., Patlan, V., Anikin, M., McAllister, W. T., Yokoyama, S., and Vassylyev, D. G. (2004) Cell 116, 381-391
3. Jia, Y., and Patel, S. S. (1997) J. Biol. Chem. 272, 30147-30153
4. Jia, Y., and Patel, S. S. (1997) Biochemistry 36, 4223-4232
5. Guo, Q., Nayak, D., Brieba, L. G., and Sousa, R. (2005) J. Mol. Biol. 353, 256-270
6. Ma, K., Temiakov, D., Anikin, M., and McAllister, W. T. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 17612-17617
7. Ma, K., Temiakov, D., Jiang, M., Anikin, M., and McAllister, W. T. (2002) J. Biol. Chem. 277, 43206-43215
8. Bandwar, R. P., Tang, G. Q., and Patel, S. S. (2006) J. Mol. Biol. 360, 466-483
9. Yin, Y. W., and Steitz, T. A. (2002) Science 298, 1387-1395
10. Steitz, T. A. (2004) Curr. Opin. Struct. Biol. 14, 4-9
11. Tahirov, T. H., Temiakov, D., Anikin, M., Patlan, V., McAllister, W. T., Vassylyev, D. G., and Yokoyama, S. (2002) Nature 420, 43-50
12. Huang, J., and Sousa, R. (2000) J. Mol. Biol. 303, 347-358
13. Temiakov, D., Mentesana, P. E., Ma, K., Mustaev, A., Borukhov, S., and McAllister, W. T. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 14109-14114
14. Daube, S. S., and von Hippel, P. H. (1992) Science 258, 1320-1324
15. Daube, S. S., and von Hippel, P. H. (1994) Biochemistry 33, 340-347
16. Temiakov, D., Anikin, M., and McAllister, W. T. (2002) J. Biol. Chem. 277, 47035-47043
17. Yin, Y. W., and Steitz, T. A. (2004) Cell 116, 393-404
18. Patel, S. S., Wong, I., and Johnson, K. A. (1991) Biochemistry 30, 511-525
19. Benkovic, S. J., and Cameron, C. E. (1995) Methods Enzymol. 262, 257-269
20. Burton, Z. F., Feig, M., Gong, X. Q., Zhang, C., Nedialkov, Y. A., and Xiong, Y. (2005) Biochem. Cell Biol. 83, 486-496
21. Nedialkov, Y. A., Gong, X. Q., Hovde, S. L., Yamaguchi, Y., Handa, H., Geiger, J. H., Yan, H., and Burton, Z. F. (2003) J. Biol. Chem. 278, 18303-18312
22. Washington, M. T., Prakash, L., and Prakash, S. (2001) Cell 107, 917-927
23. Doublie, S., Sawaya, M. R., and Ellenberger, T. (1999) Structure (Camb.) 7, R31-R35
24. Foster, J. E., Holmes, S. F., and Erie, D. A. (2001) Cell 106, 243-252
25. Hsieh, J. C., Zinnen, S., and Modrich, P. (1993) J. Biol. Chem. 268, 24607-24613
26. Davanloo, P., Rosenberg, A. H., Dunn, J. J., and Studier, F. W. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 2035-2039
27. Jia, Y., Kumar, A., and Patel, S. S. (1996) J. Biol. Chem. 271, 30451-30458
28. King, G. C., Martin, C. T., Pham, T. T., and Coleman, J. E. (1986) Biochemistry 25, 36-40
29. Wong, I., and Lohman, T. M. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5428-5432
30. Hingorani, M. M., and Patel, S. S. (1993) Biochemistry 32, 12478-12487
31. Kuchta, R. D., Cowart, M., Allen, D., and Benkovic, S. J. (1988) Biochem. Soc. Trans. 16, 947-949
32. Datta, K., Johnson, N. P., and von Hippel, P. H. (2006) J. Mol. Biol. 360, 800-813
33. Sousa, R., Chung, Y. J., Rose, J. P., and Wang, B. C. (1993) Nature 364, 593-599
34. Guillerez, J., Lopez, P. J., Proux, F., Launay, H., and Dreyfus, M. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5958-5963
35. Pandey, M., Patel, S., and Gabriel, A. (2004) J. Biol. Chem. 279, 47840-47848
36. Arnold, J. J., and Cameron, C. E. (2004) Biochemistry 43, 5126-5137
37. Dahlberg, M. E., and Benkovic, S. J. (1991) Biochemistry 30, 4835-4843
38. Doublie, S., and Ellenberger, T. (1998) Curr. Opin. Struct. Biol. 8, 704-712
39. Wong, I., Patel, S. S., and Johnson, K. A. (1991) Biochemistry 30, 526-537
40. Tsai, Y. C., and Johnson, K. A. (2006) Biochemistry 45, 9675-9687
41. Li, Y., Korolev, S., and Waksman, G. (1998) EMBO J. 17, 7514-7525
42. Johnson, S. J., Taylor, J. S., and Beese, L. S. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 3895-3900
43. Guo, Q., and Sousa, R. (2006) J. Mol. Biol. 358, 241-254