Equilibrium and stopped-flow kinetic studies of interaction between T7 RNA polymerase and its promoters measured by protein and 2-aminopurine fluorescence changes

Journal of Biological Chemistry

Volumn 271, Issue 48, 1996, Pages 30451-30458

  Jia, Yiping ^a   Kumar, Amarendra ^a   Patel, Smita S ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

2 AMINOPURINE; RNA POLYMERASE;

ARTICLE; BACTERIOPHAGE T7; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DISSOCIATION CONSTANT; ENZYME KINETICS; EQUILIBRIUM CONSTANT; ESCHERICHIA COLI; FLUORESCENCE; ISOMERISM; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; TRANSCRIPTION INITIATION;

2-AMINOPURINE; BACTERIOPHAGE T7; BASE SEQUENCE; DNA-BINDING PROTEINS; DNA-DIRECTED RNA POLYMERASES; KINETICS; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS (GENETICS); PROTEIN BINDING; SPECTROMETRY, FLUORESCENCE; VIRAL PROTEINS;

ESCHERICHIA COLI;

EID: 0029846428     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.271.48.30451     Document Type: Article

References (29)

1. Chamberlin, M. J., and Ryan, T. (1983) in The Enzymes (Boyer, P. D., ed) Vol. 15, pp. 87-108, Academic Press, New York
2. Davanloo, P., Rosenberg, A. H., Dunn, J. J., and Studier, F. W. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 2035-2039
3. Kotani, H., Ishizaki, Y., Hiraoka, N., and Obayashi, A. (1987) Nucleic Acids Res. 15, 2653-2664
4. Martin, C. T., and Coleman, J. E. (1987) Biochemistry 26, 2690-2696
5. Ikeda, R. A., Lin, A. C., and Clarke, J. (1992) J. Biol. Chem. 267, 2640-2649
6. Dunn, J. J., and Studier, F. W. (1983) J. Mol. Biol. 166, 477-535
7. Grodberg, J., and Dunn, J. J. (1988) J. Bacteriol. 170, 1245-1253
8. King, G. C., Martin, C. T., Pham, T. T., and Coleman, J. E. (1986) Biochemistry 25, 36-40
9. Fox, J. J., Wempen, I., Hampton, A., and Doerr, I. L. (1958) J. Am. Chem. Soc. 80, 1669-1675
10. Suh, W.-C., Ross, W., and Record, M. T., Jr. (1993) Science 259, 358-361
11. Newlands, J. T., Ross, W., Gosink, K. K., and Gourse, R. L. (1991) J. Mol. Biol. 220, 569-583
12. Ohlsen, K. L., and Gralla, J. D. (1992) J. Biol. Chem. 267, 19813-19818
13. Record, M. T., Jr., Reznikoff, W. S., and Schlax, P. J. (1996) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd Ed., pp. 792-820, American Society for Microbiology, Washington, D. C.
14. Ward, D. C., Reich, E., and Stryer, L. (1969) J. Biol. Chem. 244, 1228-1237
15. Millar, D. P. (1996) Curr. Opin. Struct. Biol. 6, 322-326
16. Chamberlin, M., McGrath, J., and Waskell, L. (1970) Nature 228, 227-231
17. Oakley, J. L., Strothkamp, R. E., Sarris, A. H., and Coleman, J. E. (1979) Biochemistry 18, 528-537
18. Moffatt, B. A., Dunn, J. J., and Studier, F. W. (1984) J. Mol. Biol. 173, 265-269
19. Osterman, H. L., and Coleman, J. E. (1981) Biochemistry 20, 4884-4892
20. Muller, D. K., Martin, C. T., and Coleman, J. E. (1989) Biochemistry 28, 3306-3313
21. Johnson, K. A., (1992) in The Enzymes (Singman, D. S., ed) 3rd Ed. Vol. 20, pp. 1-61, Academic Press, Orlando, FL
22. Fersht, A. R., and Requena, Y. (1971) J. Mol. Biol. 60, 279-290
23. Sousa, R., Rose, J., and Wang, B. C. (1994) J. Mol. Biol. 244, 6-12
24. Hayatsu, H., and Ukita, T. (1967) Biochem. Biophys. Res. Commun. 29, 556-561
25. Kainz, M., and Roberts, J. (1992) Science 255, 838-841
26. Roe, J. H., Burgess, R. R., and Record, M. T., Jr. (1985) J. Mol. Biol. 184, 441-453
27. Zhang, X., Reeder, T., and Schleif, R. (1996) J. Mol. Biol. 258, 14-24
28. Wellington, S. R., and Spiegelman, G. B. (1993) J. Biol. Chem. 268, 7205-7214
29. Travers, A. A. (1987) Crit. Rev. Biochem. 22, 181-219