Transcriptional profiling of the protein phosphatase 2C family in yeast provides insights into the unique functional roles of Ptc1

Journal of Biological Chemistry

Volumn 281, Issue 46, 2006, Pages 35057-35069

  González, Asier ^a   Ruiz, Amparo ^a   Serrano, Raquel ^a   Ariño, Joaquín ^a   Casamayor, Antonio ^a  

^a UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PH; CELL WALL INTEGRITY PATHWAY; MUTATION; PHENOTYPES; VACUOLES;

CALCIUM; ENZYMES; GENES; HEAVY METALS; MUTAGENESIS; PH EFFECTS; YEAST;

CATALYSIS;

CALCINEURIN; CALCIUM ION; FUNGAL PROTEIN; HEAVY METAL; MITOGEN ACTIVATED PROTEIN KINASE; MITOGEN ACTIVATED PROTEIN KINASE STL2; MUTANT PROTEIN; PHOSPHOPROTEIN PHOSPHATASE; PROTEIN CRH1; PROTEIN HOG1; PROTEIN PHOSPHATASE 2C1; PROTEIN PHOSPHATASE 2C2; PROTEIN PHOSPHATASE 2C3; PROTEIN PHOSPHATASE 2C4; PROTEIN PHOSPHATASE 2C5; PROTEIN SED1; PROTEIN YKL161C; UNCLASSIFIED DRUG;

ALKALINITY; ARTICLE; CELL DAMAGE; CELL MEMBRANE PERMEABILITY; CELL VACUOLE; CONTROLLED STUDY; GENE EXPRESSION; GENETIC TRANSCRIPTION; HAPLOIDY; MEMBRANE DAMAGE; MUTATIONAL ANALYSIS; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FUNCTION; YEAST;

BETA-GALACTOSIDASE; CALCINEURIN; CALCIUM; GENE DELETION; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, FUNGAL; HAPLOIDY; PHOSPHOPROTEIN PHOSPHATASE; PHYLOGENY; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION, GENETIC;

SACCHAROMYCES CEREVISIAE;

EID: 33845959466     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M607919200     Document Type: Article

References (75)

1. Cohen, P. T. (2004) in Protein Phosphatases (Arino, J., and Alexander, D. R., eds) pp 1-20, Springer-Verlag, Heidelberg
2. Stark, M. J. (1996) Yeast 12, 1647-1675
3. Jiang, L., Whiteway, M., Ramos, C., Rodriguez-Medina, J. R., and Shen, S. H. (2002) FEBS Lett. 527, 323-325
4. Cheng, A., Ross, K. E., Kaldis, P., and Solomon, M. J. (1999) Genes Dev. 13, 2946-2957
5. Warmka, J., Hanneman, J., Lee, J., Amin, D., and Ota, I. (2001) Mol. Cell. Biol. 21, 51-60
6. Maeda, T., Tsai, A. Y., and Saito, H. (1993) Mol. Cell. Biol. 13, 5408-5417
7. Young, C., Mapes, J., Hanneman, J., Al Zarban, S., and Ota, I. (2002) Eukaryot. Cell 1, 1032-1040
8. Saito, H., and Tatebayashi, K. (2004) J. Biochem. (Tokyo) 136, 267-272
9. Martin, H., Flandez, M., Nombela, C., and Molina, M. (2005) Mol. Microbiol. 58, 6-16
10. Mapes, J., and Ota, I. M. (2004) EMBO J. 23, 302-311
11. Shitamukai, A., Hirata, D., Sonobe, S., and Miyakawa, T. (2004) J. Biol. Chem. 279, 3651-3661
12. Robinson, M. K., van Zyl, W. H., Phizicky, E. M., and Broach, J. R. (1994) Mol. Cell. Biol. 14, 3634-3645
13. Roeder, A. D., Hermann, G. J., Keegan, B. R., Thatcher, S. A., and Shaw, J. M. (1998) Mol. Biol. Cell 9, 917-930
14. Leroy, C., Lee, S. E., Vaze, M. B., Ochsenbien, F., Guerois, R., Haber, J. E., and Marsolier-Kergoat, M. C. (2003) Mol. Cell 11, 827-835
15. Marsolier, M. C., Roussel, P., Leroy, C., and Mann, C. (2000) Genetics 154, 1523-1532
16. Welihinda, A. A., Tirasophon, W., Green, S. R., and Kaufman, R. J. (1998) Mol. Cell. Biol. 18, 1967-1977
17. Munoz, I., Simon, E., Casals, N., Clotet, J., and Arino, J. (2003) Yeast 20, 157-169
18. Huang, K. N., and Symington, L. S. (1995) Genetics 141, 1275-1285
19. Ruiz, A., Gonzalez, A., García-Salcedo, R., Ramos, J., and Arino, J. (2006) Mol. Microbiol. 62, 263-277
20. Martin, H., Rodriguez-Pachon, J. M., Ruiz, C., Nombela, C., and Molina, M. (2000) J. Biol. Chem. 275, 1511-1519
21. Martin, H., Arroyo, J., Sanchez, M., Molina, M., and Nombela, C. (1993) Mol. Gen. Genet. 241, 177-184
22. Giaever, G., Chu, A. M., Ni, L., Connelly, C., Riles, L., Veronneau, S., Dow, S., Lucau-Danila, A., Anderson, K., Andre, B., Arkin, A. P., Astromoff, A., El Bakkoury, M., Bangham, R., Benito, R., Brachat, S., Campanaro, S., Curtiss, M., Davis, K., Deutschbauer, A., Entian, K. D., Flaherty, P., Foury, F., Garfinkel, D. J., Gerstein, M., Gotte, D., Guldener, U., Hegemann, J. H., Hempel, S., Herman, Z., Jaramillo, D. F., Kelly, D. E., Kelly, S. L., Kotter, P., LaBonte, D., Lamb, D. C., Lan, N., Liang, H., Liao, H., Liu, L., Luo, C., Lussier, M., Mao, R., Menard, P., Ooi, S. L., Revuelta, J. L., Roberts, C. J., Rose, M., Ross-Macdonald, P., Scherens, B., Schimmack, G., Shafer, B., Shoemaker, D. D., Sookhai-Mahadeo, S., Storms, R. K., Strathern, J. N., Valle, G., Voet, M., Volckaert, G., Wang, C. Y., Ward, T. R., Wilhelmy, J., Winzeler, E. A., Yang, Y., Yen, G., Youngman, E., Yu, K., Bussey, H., Boeke, J. D., Snyder, M., Philippsen, P., Davis, R. W., and Johnston, M. (2002) Nature 418, 387-391
23. Ruiz, A., Yenush, L., and Arino, J. (2003) Eukaryot. Cell 2, 937-948
24. Viladevall, L., Serrano, R., Ruiz, A., Domenech, G., Giraldo, J., Barcelo, A., and Arino, J. (2004) J. Biol. Chem. 279, 43614-43624
25. Alberola, T. M., Garcia-Martinez, J., Antunez, O., Viladevall, L., Barcelo, A., Arino, J., and Perez-Ortin, J. E. (2004) Int. Microbiol. 7, 199-206
26. Herrero, J., Al Shahrour, F., Diaz-Uriarte, R., Mateos, A., Vaquerizas, J. M., Santoyo, J., and Dopazo, J. (2003) Nucleic Acids Res. 31, 3461-3467
27. Brazma, A., and Vilo, J. (2000) FEBS Lett. 480, 17-24
28. Serrano, R., Bernal, D., Simon, E., and Arino, J. (2004) J. Biol. Chem. 279, 19698-19704
29. Vida, T. A., and Emr, S. D. (1995) J. Cell Biol. 128, 779-792
30. Eisen, M. B., Spellman, P. T., Brown, P. O., and Botstein, D. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 14863-14868
31. Yoshimoto, H., Saltsman, K., Gasch, A. P., Li, H. X., Ogawa, N., Botstein, D., Brown, P. O., and Cyert, M. S. (2002) J. Biol. Chem. 277, 31079-31088
32. Bonangelino, C. J., Chavez, E. M., and Bonifacino, J. S. (2002) Mol. Biol. Cell 13, 2486-2501
33. Seeley, E. S., Kato, M., Margolis, N., Wickner, W., and Eitzen, G. (2002) Mol. Biol. Cell 13, 782-794
34. Sambade, M., Alba, M., Smardon, A. M., West, R. W., and Kane, P. M. (2005) Genetics 170, 1539-1551
35. DeRisi, J. L., Iyer, V. R., and Brown, P. O. (1997) Science 278, 680-686
36. Serrano, R., Ruiz, A., Bernal, D., Chambers, J. R., and Arino, J. (2002) Mol. Microbiol. 46, 1319-1333
37. Garcia, R., Bermejo, C., Grau, C., Perez, R., Rodriguez-Pena, J. M., Francois, J., Nombela, C., and Arroyo, J. (2004) J. Biol. Chem. 279, 15183-15195
38. Parsons, A. B., Brost, R. L., Ding, H., Li, Z., Zhang, C., Sheikh, B., Brown, G. W., Kane, P. M., Hughes, T. R., and Boone, C. (2004) Nat. Biotechnol. 22, 62-69
39. Lussier, M., White, A. M., Sheraton, J., di Paolo, T., Treadwell, J., Southard, S. B., Horenstein, C. I., Chen-Weiner, J., Ram, A. F., Kapteyn, J. C., Roemer, T. W., Vo, D. H., Bondoc, D. C., Hall, J., Zhong, W. W., Sdicu, A. M., Davies, J., Klis, F. M., Robbins, P. W., and Bussey, H. (1997) Genetics 147, 435-450
40. Jiang, B., Ram, A. F., Sheraton, J., Klis, F. M., and Bussey, H. (1995) Mol. Gen. Genet. 248, 260-269
41. Markovich, S., Yekutiel, A., Shalit, I., Shadkchan, Y., and Osherov, N. (2004) Antimicrob. Agents Chemother. 48, 3871-3876
42. Page, N., Gerard-Vincent, M., Menard, P., Beaulieu, M., Azuma, M., Dijkgraaf, G. J., Li, H., Marcoux, J., Nguyen, T., Dowse, T., Sdicu, A. M., and Bussey, H. (2003) Genetics 163, 875-894
43. Tong, A. H., Lesage, G., Bader, G. D., Ding, H., Xu, H., Xin, X., Young, J., Berriz, G. F., Brost, R. L., Chang, M., Chen, Y., Cheng, X., Chua, G., Friesen, H., Goldberg, D. S., Haynes, J., Humphries, C., He, G., Hussein, S., Ke, L., Krogan, N., Li, Z., Levinson, J. N., Lu, H., Menard, P., Munyana, C., Parsons, A. B., Ryan, O., Tonikian, R., Roberts, T., Sdicu, A. M., Shapiro, J., Sheikh, B., Suter, B., Wong, S. L., Zhang, L. V., Zhu, H., Burd, C. G., Munro, S., Sander, C., Rine, J., Greenblatt, J., Peter, M., Bretscher, A., Bell, G., Roth, F. P., Brown, G. W., Andrews, B., Bussey, H., and Boone, C. (2004) Science 303, 808-813
44. Lesage, G., Sdicu, A. M., Menard, P., Shapiro, J., Hussein, S., and Bussey, H. (2004) Genetics 167, 35-49
45. Lagorce, A., Hauser, N. C., Labourdette, D., Rodriguez, C., Martin-Yken, H., Arroyo, J., Hoheisel, J. D., and Francois, J. (2003) J. Biol. Chem. 278, 20345-20357
46. Bilsland, E., Dahlen, M., and Sunnerhagen, P. (1998) Yeast 14, 655-664
47. Casamayor, A., Torrance, P. D., Kobayashi, T., Thorner, J., and Alessi, D. R. (1999) Curr. Biol. 9, 186-197
48. Hahn, J. S., and Thiele, D. J. (2002) J. Biol. Chem. 277, 21278-21284
49. Garcia-Rodriguez, L. J., Valle, R., Duran, A., and Roncero, C. (2005) FEBS Lett. 579, 6186-6190
50. Garcia-Rodriguez, L. J., Duran, A., and Roncero, C. (2000) J. Bacteriol. 182, 2428-2437
51. Nelson, H., and Nelson, N. (1990) Proc. Natl. Acad. Sci. U. S. A. 87, 3503-3507
52. Ohya, Y., Umemoto, N., Tanida, I., Ohta, A., Iida, H., and Anraku, Y. (1991) J. Biol. Chem. 266, 13971-13977
53. van Voorst, F., Houghton-Larsen, J., Jonson, L., Kielland-Brandt, M. C., and Brandt, A. (2006) Yeast 23, 351-359
54. Kane, P. M. (2006) Microbiol. Mol. Biol. Rev. 70, 177-191
55. Gupta, S. S., Ton, V. K., Beaudry, V., Rulli, S., Cunningham, K., and Rao, R. (2003) J. Biol. Chem. 278, 28831-28839
56. Sakumoto, N., Matsuoka, I., Mukai, Y., Ogawa, N., Kaneko, Y., and Harashima, S. (2002) Yeast 19, 587-599
57. Sakumoto, N., Mukai, Y., Uchida, K., Kouchi, T., Kuwajima, J., Nakagawa, Y., Sugioka, S., Yamamoto, E., Furuyama, T., Mizubuchi, H., Ohsugi, N., Sakuno, T., Kikuchi, K., Matsuoka, I., Ogawa, N., Kaneko, Y., and Harashima, S. (1999) Yeast 15, 1669-1679
58. Eide, D. J., Bridgham, J. T., Zhao, Z., and Mattoon, J. R. (1993) Mol. Gen. Genet. 241, 447-456
59. Eide, D. J., Clark, S., Nair, T. M., Gehl, M., Gribskov, M., Guerinot, M. L., and Harper, J. F. (2005) Genome Biol. 6, R77.1-R77.13
60. Enyenihi, A. H., and Saunders, W. S. (2003) Genetics 163, 47-54
61. Zhang, J. W., Parra, K. J., Liu, J., and Kane, P. M. (1998) J. Biol. Chem. 273, 18470-18480
62. Ni, L., and Snyder, M. (2001) Mol. Biol. Cell 12, 2147-2170
63. Tahirovic, S., Schorr, M., and Mayinger, P. (2005) Traffic 6, 116-130
64. Raymond, C. K., Howald-Stevenson, I., Vater, C. A., and Stevens, T. H. (1992) Mol. Biol. Cell 3, 1389-1402
65. Gaits, F., and Russell, P. (1999) Mol. Biol. Cell 10, 2647-2654
66. Halachmi, D., and Eilam, Y. (1989) FEBS Lett. 256, 55-61
67. Strayle, J., Pozzan, T., and Rudolph, H. K. (1999) EMBO J. 18, 4733-4743
68. Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V., Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S., Sonnhammer, E. L., Studholme, D. J., Yeats, C., and Eddy, S. R. (2004) Nucleic Acids Res. 32, D138-D141
69. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., Chu, A. M., Connelly, C., Davis, K., Dietrich, F., Dow, S. W., El Bakkoury, M., Foury, F., Friend, S. H., Gentalen, E., Giaever, G., Hegemann, J. H., Jones, T., Laub, M., Liao, H., and Davis, R. W. (1999) Science 285, 901-906
70. de Nadal, E., Clotet, J., Posas, F., Serrano, R., Gomez, N., and Arino, J. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 7357-7362
71. Vissi, E., Clotet, J., de Nadal, E., Barcelo, A., Bako, E., Gergely, P., Dombradi, V., and Arino, J. (2001) Yeast 18, 115-124
72. Ruepp, A., Zollner, A., Maier, D., Albermann, K., Hani, J., Mokrejs, M., Tetko, I., Guldener, U., Mannhaupt, G., Munsterkotter, M., and Mewes, H. W. (2004) Nucleic Acids Res. 32, 5539-5545
73. Boorsma, A., De Nobel, H., ter Riet, B., Bargmann, B., Brul, S., Hellingwerf, K. J., and Klis, F. M. (2004) Yeast 21, 413-427
74. Jung, U. S., and Levin, D. E. (1999) Mol. Microbiol. 34, 1049-1057
75. Zakrzewska, A., Boorsma, A., Brul, S., Hellingwerf, K. J., and Klis, F. M. (2005) Eukaryot. Cell 4, 703-715