-
1
-
-
0029033175
-
Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium
-
Wasinger VC, Cordwell SJ, Cerpa-Poljak A et al. Progress with gene-product mapping of the Mollicutes: mycoplasma genitalium. Electrophoresis 16(7), 1090-1094 (1995).
-
(1995)
Electrophoresis
, vol.16
, Issue.7
, pp. 1090-1094
-
-
Wasinger, V.C.1
Cordwell, S.J.2
Cerpa-Poljak, A.3
-
2
-
-
0036813201
-
Towards patient-specific tumor antigen selection for vaccination
-
Rammensee HG, Weinschenk T, Gouttefangeas C, Stevanovic S. Towards patient-specific tumor antigen selection for vaccination. Immunol. Rev. 188, 164-176 (2002).
-
(2002)
Immunol. Rev
, vol.188
, pp. 164-176
-
-
Rammensee, H.G.1
Weinschenk, T.2
Gouttefangeas, C.3
Stevanovic, S.4
-
3
-
-
0037435030
-
Mass spectrometry-based proteomics
-
Aebersold R, Mann M. Mass spectrometry-based proteomics. Nature 422(6928), 198-207 (2003).
-
(2003)
Nature
, vol.422
, Issue.6928
, pp. 198-207
-
-
Aebersold, R.1
Mann, M.2
-
4
-
-
26244455510
-
Mechanisms of MHC class I-restricted antigen processing and cross-presentation
-
Cresswell P, Ackerman AL, Giodini A et al. Mechanisms of MHC class I-restricted antigen processing and cross-presentation. Immunol. Rev. 207, 145-157 (2005).
-
(2005)
Immunol. Rev
, vol.207
, pp. 145-157
-
-
Cresswell, P.1
Ackerman, A.L.2
Giodini, A.3
-
5
-
-
26244441528
-
Compartmentalization of class II antigen presentation: Contribution of cytoplasmic and endosomal processing
-
Li P, Gregg JL, Wang N et al. Compartmentalization of class II antigen presentation: contribution of cytoplasmic and endosomal processing. Immunol. Rev. 207, 206-217 (2005).
-
(2005)
Immunol. Rev
, vol.207
, pp. 206-217
-
-
Li, P.1
Gregg, J.L.2
Wang, N.3
-
6
-
-
0028096715
-
Trimming of antigenic peptides in an early secretory compartment
-
Snyder HL, Yewdell JW, Bennink JR. Trimming of antigenic peptides in an early secretory compartment. J. Exp. Med. 180(6), 2389-2394 (1994).
-
(1994)
J. Exp. Med
, vol.180
, Issue.6
, pp. 2389-2394
-
-
Snyder, H.L.1
Yewdell, J.W.2
Bennink, J.R.3
-
7
-
-
0037015624
-
ERAAP customizes peptides for MHC class I molecules in the endoplasmic reticulum
-
Serwold T, Gonzalez F, Kim J et al. ERAAP customizes peptides for MHC class I molecules in the endoplasmic reticulum. Nature 419(6906), 480-483 (2002).
-
(2002)
Nature
, vol.419
, Issue.6906
, pp. 480-483
-
-
Serwold, T.1
Gonzalez, F.2
Kim, J.3
-
8
-
-
0035399848
-
Not such a dismal science: The economics of protein synthesis, folding, degradation and antigen processing
-
Yewdell JW. Not such a dismal science: the economics of protein synthesis, folding, degradation and antigen processing. Trends Cell Biol. 11(7), 294-297 (2001).
-
(2001)
Trends Cell Biol
, vol.11
, Issue.7
, pp. 294-297
-
-
Yewdell, J.W.1
-
9
-
-
0037242017
-
-
Reits E, Griekspoor A, Neijssen J et al. Peptide diffusion, protection, and degradation in nuclear and cytoplasmic compartments before antigen presentation by MHC class I. Immunity 18(1), 97-108 (2003). •• Elegant experiments to investigate the distribution and degradation of intracellular peptides within cytosol and nucleus and salvage by transporter associated with antigen processing (TAP) transport.
-
Reits E, Griekspoor A, Neijssen J et al. Peptide diffusion, protection, and degradation in nuclear and cytoplasmic compartments before antigen presentation by MHC class I. Immunity 18(1), 97-108 (2003). •• Elegant experiments to investigate the distribution and degradation of intracellular peptides within cytosol and nucleus and salvage by transporter associated with antigen processing (TAP) transport.
-
-
-
-
10
-
-
0037342270
-
-
Princiotta MF, Finzi D, Qian SB et al. Quantitating protein synthesis, degradation, and endogenous antigen processing. Immunity 18(3), 343-354 (2003). •• This is a milestone paper which exactly quantifies protein turnover and the major steps of major histocompatibility complex (MHC) class I antigen processing with special respect to the DriP hypothesis.
-
Princiotta MF, Finzi D, Qian SB et al. Quantitating protein synthesis, degradation, and endogenous antigen processing. Immunity 18(3), 343-354 (2003). •• This is a milestone paper which exactly quantifies protein turnover and the major steps of major histocompatibility complex (MHC) class I antigen processing with special respect to the DriP hypothesis.
-
-
-
-
11
-
-
0033618399
-
26S proteasome-mediated production of an authentic major histocompatibility class I-restricted epitope from an intact protein substrate
-
Ben Shahar S, Komlosh A, Nadav E et al. 26S proteasome-mediated production of an authentic major histocompatibility class I-restricted epitope from an intact protein substrate. J. Biol. Chem. 274(31), 21963-21972 (1999).
-
(1999)
J. Biol. Chem
, vol.274
, Issue.31
, pp. 21963-21972
-
-
Ben Shahar, S.1
Komlosh, A.2
Nadav, E.3
-
12
-
-
0035873704
-
26S proteasomes and immunoproteasomes produce mainly N-extended versions of an antigenic peptide
-
Cascio P, Hilton C, Kisselev AF et al. 26S proteasomes and immunoproteasomes produce mainly N-extended versions of an antigenic peptide. EMBO J. 20(10), 2357-2366 (2001).
-
(2001)
EMBO J
, vol.20
, Issue.10
, pp. 2357-2366
-
-
Cascio, P.1
Hilton, C.2
Kisselev, A.F.3
-
13
-
-
0033566953
-
Intracellular rate-limiting steps in MHC class I antigen processing
-
Montoya M, Del Val M. Intracellular rate-limiting steps in MHC class I antigen processing. J. Immunol. 163(4), 1914-1922 (1999).
-
(1999)
J. Immunol
, vol.163
, Issue.4
, pp. 1914-1922
-
-
Montoya, M.1
Del Val, M.2
-
14
-
-
0025324091
-
Structure, function, and diversity of class I major histocompatibility complex molecules
-
Bjorkman PJ, Parham P. Structure, function, and diversity of class I major histocompatibility complex molecules. Annu. Rev. Biochem. 59, 253-288 (1990).
-
(1990)
Annu. Rev. Biochem
, vol.59
, pp. 253-288
-
-
Bjorkman, P.J.1
Parham, P.2
-
15
-
-
0033399166
-
Quantitative aspects of T cell activation - peptide generation and editing by MHC class I molecules
-
Stevanovic S, Schild H. Quantitative aspects of T cell activation - peptide generation and editing by MHC class I molecules. Semin. Immunol. 11(6), 375-384 (1999).
-
(1999)
Semin. Immunol
, vol.11
, Issue.6
, pp. 375-384
-
-
Stevanovic, S.1
Schild, H.2
-
16
-
-
0038206842
-
Cutting edge: Class I presentation of host peptides following HIV infection
-
Hickman HD, Luis AD, Bardet W et al. Cutting edge: class I presentation of host peptides following HIV infection. J. Immunol. 171(1), 22-26 (2003).
-
(2003)
J. Immunol
, vol.171
, Issue.1
, pp. 22-26
-
-
Hickman, H.D.1
Luis, A.D.2
Bardet, W.3
-
17
-
-
0037108856
-
Integrated functional genomics approach for the design of patient-individual antitumor vaccines
-
Weinschenk T, Gouttefangeas C, Schirle M et al. Integrated functional genomics approach for the design of patient-individual antitumor vaccines. Cancer Res. 62(20), 5818-5827 (2002).
-
(2002)
Cancer Res
, vol.62
, Issue.20
, pp. 5818-5827
-
-
Weinschenk, T.1
Gouttefangeas, C.2
Schirle, M.3
-
18
-
-
0027489488
-
Identification of T-cell epitopes: Rapid isolation of class I-presented peptides from viable cells by mild acid elution
-
Storkus WJ, Zeh HJ, III, Salter RD, Lotze MT. Identification of T-cell epitopes: rapid isolation of class I-presented peptides from viable cells by mild acid elution. J. Immunother. 14(2), 94-103 (1993).
-
(1993)
J. Immunother
, vol.14
, Issue.2
, pp. 94-103
-
-
Storkus, W.J.1
Zeh III, H.J.2
Salter, R.D.3
Lotze, M.T.4
-
19
-
-
0025855156
-
Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules
-
Falk K, Rötzschke O, Stevanovic S et al. Allele-specific motifs revealed by sequencing of self-peptides eluted from MHC molecules. Nature 351(6324), 290-296 (1991).
-
(1991)
Nature
, vol.351
, Issue.6324
, pp. 290-296
-
-
Falk, K.1
Rötzschke, O.2
Stevanovic, S.3
-
20
-
-
0026482571
-
Peptide-induced conformational changes in class I heavy chains alter major histocompatibility complex recognition
-
Bluestone JA, Jameson S, Miller S, Dick R. Peptide-induced conformational changes in class I heavy chains alter major histocompatibility complex recognition. J. Exp. Med. 176(6), 1757-1761 (1992).
-
(1992)
J. Exp. Med
, vol.176
, Issue.6
, pp. 1757-1761
-
-
Bluestone, J.A.1
Jameson, S.2
Miller, S.3
Dick, R.4
-
21
-
-
0027423666
-
Binding of peptides lacking consensus anchor residue alters H-2Ld serologic recognition
-
Solheim JC, Carreno BM, Smith JD et al. Binding of peptides lacking consensus anchor residue alters H-2Ld serologic recognition. J. Immunol. 151(10), 5387-5397 (1993).
-
(1993)
J. Immunol
, vol.151
, Issue.10
, pp. 5387-5397
-
-
Solheim, J.C.1
Carreno, B.M.2
Smith, J.D.3
-
22
-
-
1842338989
-
Genetic engineering of an H-2Dd/Q10b chimeric histocompatibility antigen: Purification of soluble protein from transformant cell supernatants
-
Margulies DH, Ramsey AL, Boyd LF, McCluskey J. Genetic engineering of an H-2Dd/Q10b chimeric histocompatibility antigen: purification of soluble protein from transformant cell supernatants. Proc. Natl Acad. Sci. USA 83(14), 5252-5256 (1986).
-
(1986)
Proc. Natl Acad. Sci. USA
, vol.83
, Issue.14
, pp. 5252-5256
-
-
Margulies, D.H.1
Ramsey, A.L.2
Boyd, L.F.3
McCluskey, J.4
-
23
-
-
0030945541
-
Large-scale production of class I bound peptides: Assigning a signature to HLA-B*1501
-
Prilliman K, Lindsey M, Zuo Y et al. Large-scale production of class I bound peptides: assigning a signature to HLA-B*1501. Immunogenetics 45(6), 379-385 (1997).
-
(1997)
Immunogenetics
, vol.45
, Issue.6
, pp. 379-385
-
-
Prilliman, K.1
Lindsey, M.2
Zuo, Y.3
-
24
-
-
22244437207
-
Lessons to be learned from primary renal cell carcinomas: Novel tumor antigens and HLA ligands for immunotherapy
-
Krüger T, Schoor O, Lemmel C et al. Lessons to be learned from primary renal cell carcinomas: novel tumor antigens and HLA ligands for immunotherapy. Cancer Immunol. Immunother. 54(9), 826-836 (2005).
-
(2005)
Cancer Immunol. Immunother
, vol.54
, Issue.9
, pp. 826-836
-
-
Krüger, T.1
Schoor, O.2
Lemmel, C.3
-
25
-
-
0025740521
-
Identification of naturally processed viral nonapeptides allows their quantification in infected cells and suggests an allele-specific T cell epitope forecast
-
Falk K, Rötzschke O, Deres K et al. Identification of naturally processed viral nonapeptides allows their quantification in infected cells and suggests an allele-specific T cell epitope forecast. J. Exp. Med. 174(2), 425-434 (1991).
-
(1991)
J. Exp. Med
, vol.174
, Issue.2
, pp. 425-434
-
-
Falk, K.1
Rötzschke, O.2
Deres, K.3
-
26
-
-
0026507564
-
-
Hunt DF, Henderson RA, Shabanowitz J et al. Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry. Science 255(5049), 1261-1263 (1992). •• Describes the complexity of the MHC ligandome and introduces electrospray tandem mass spectrometry for sequence analysis of MHC-bound peptides.
-
Hunt DF, Henderson RA, Shabanowitz J et al. Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry. Science 255(5049), 1261-1263 (1992). •• Describes the complexity of the MHC ligandome and introduces electrospray tandem mass spectrometry for sequence analysis of MHC-bound peptides.
-
-
-
-
27
-
-
29244442929
-
Rapid and sensitive identification of major histocompatibility complex class I-associated tumor peptides by Nano-LC MALDI MS/MS
-
Hofmann S, Glückmann M, Kausche S et al. Rapid and sensitive identification of major histocompatibility complex class I-associated tumor peptides by Nano-LC MALDI MS/MS. Mol. Cell Proteomics 4(12), 1888-1897 (2005).
-
(2005)
Mol. Cell Proteomics
, vol.4
, Issue.12
, pp. 1888-1897
-
-
Hofmann, S.1
Glückmann, M.2
Kausche, S.3
-
28
-
-
0037063316
-
Identification of a dominant self-ligand bound to three HLA B44 alleles and the preliminary crystallographic analysis of recombinant forms of each complex
-
Macdonald W, Williams DS, Clements CS et al. Identification of a dominant self-ligand bound to three HLA B44 alleles and the preliminary crystallographic analysis of recombinant forms of each complex. FEBS Lett. 527(1-3), 27-32 (2002).
-
(2002)
FEBS Lett
, vol.527
, Issue.1-3
, pp. 27-32
-
-
Macdonald, W.1
Williams, D.S.2
Clements, C.S.3
-
29
-
-
0032152437
-
Contribution of mass spectrometry to contemporary immunology
-
de Jong A. Contribution of mass spectrometry to contemporary immunology. Mass Spectrom. Rev. 17(5), 311-335 (1998).
-
(1998)
Mass Spectrom. Rev
, vol.17
, Issue.5
, pp. 311-335
-
-
de Jong, A.1
-
30
-
-
0037366624
-
The use of HPLC-MS in T-cell epitope identification
-
Lemmel C, Stevanovic S. The use of HPLC-MS in T-cell epitope identification. Methods 29(3), 248-259 (2003).
-
(2003)
Methods
, vol.29
, Issue.3
, pp. 248-259
-
-
Lemmel, C.1
Stevanovic, S.2
-
31
-
-
0042386232
-
Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage
-
Bodnar WM, Blackburn RK, Krise JM, Moseley MA. Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage. J. Am. Soc. Mass Spectrom. 14(9), 971-979 (2003).
-
(2003)
J. Am. Soc. Mass Spectrom
, vol.14
, Issue.9
, pp. 971-979
-
-
Bodnar, W.M.1
Blackburn, R.K.2
Krise, J.M.3
Moseley, M.A.4
-
32
-
-
28544435850
-
Enhanced characterization of complex proteomic samples using LC-MALDI MS/MS: Exclusion of redundant peptides from MS/MS analysis in replicate runs
-
Chen HS, Rejtar T, Andreev V et al. Enhanced characterization of complex proteomic samples using LC-MALDI MS/MS: exclusion of redundant peptides from MS/MS analysis in replicate runs. Anal. Chem. 77(23), 7816-7825 (2005).
-
(2005)
Anal. Chem
, vol.77
, Issue.23
, pp. 7816-7825
-
-
Chen, H.S.1
Rejtar, T.2
Andreev, V.3
-
33
-
-
0033996357
-
Identification of major histocompatibility complex class II-associated peptides derived from freshly prepared rat Langerhans cells using MALDI-PSD and Edman degradation
-
Sickmann A, Bluggel M, Kulke M et al. Identification of major histocompatibility complex class II-associated peptides derived from freshly prepared rat Langerhans cells using MALDI-PSD and Edman degradation. Analyst 125(4), 569-573 (2000).
-
(2000)
Analyst
, vol.125
, Issue.4
, pp. 569-573
-
-
Sickmann, A.1
Bluggel, M.2
Kulke, M.3
-
34
-
-
33645813378
-
Mass spectrometry and protein analysis
-
Domon B, Aebersold R. Mass spectrometry and protein analysis. Science 312(5771), 212-217 (2006).
-
(2006)
Science
, vol.312
, Issue.5771
, pp. 212-217
-
-
Domon, B.1
Aebersold, R.2
-
35
-
-
26444456180
-
Application of mass spectrometry in proteomics
-
Guerrera IC, Kleiner O. Application of mass spectrometry in proteomics. Biosci. Rep. 25(1-2), 71-93 (2005).
-
(2005)
Biosci. Rep
, vol.25
, Issue.1-2
, pp. 71-93
-
-
Guerrera, I.C.1
Kleiner, O.2
-
36
-
-
20344361954
-
Autophagy promotes MHC class II presentation of peptides from intracellular source proteins
-
Dengjel J, Schoor O, Fischer R et al. Autophagy promotes MHC class II presentation of peptides from intracellular source proteins. Proc. Natl Acad. Sci. USA 102(22), 7922-7927 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.22
, pp. 7922-7927
-
-
Dengjel, J.1
Schoor, O.2
Fischer, R.3
-
37
-
-
0034998413
-
In vivo MHC class II presentation of cytosolic proteins revealed by rapid automated tandem mass spectrometry and functional analyses
-
Dongre AR, Kovats S, deRoos P et al. In vivo MHC class II presentation of cytosolic proteins revealed by rapid automated tandem mass spectrometry and functional analyses. Eur. J. Immunol. 31(5), 1485-1494 (2001).
-
(2001)
Eur. J. Immunol
, vol.31
, Issue.5
, pp. 1485-1494
-
-
Dongre, A.R.1
Kovats, S.2
deRoos, P.3
-
38
-
-
1342324680
-
Toward a definition of self: Proteomic evaluation of the class I peptide repertoire
-
Hickman HD, Luis AD, Buchli R et al. Toward a definition of self: proteomic evaluation of the class I peptide repertoire. J. Immunol. 172(5), 2944-2952 (2004).
-
(2004)
J. Immunol
, vol.172
, Issue.5
, pp. 2944-2952
-
-
Hickman, H.D.1
Luis, A.D.2
Buchli, R.3
-
39
-
-
0034662907
-
Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology
-
Gygi SP, Corthals GL, Zhang Y et al. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc. Natl Acad. Sci. USA 97(17), 9390-9395 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, Issue.17
, pp. 9390-9395
-
-
Gygi, S.P.1
Corthals, G.L.2
Zhang, Y.3
-
40
-
-
2942617034
-
Has the yo-yo stopped? An assessment of human protein-coding gene number
-
Southan C. Has the yo-yo stopped? An assessment of human protein-coding gene number. Proteomics 4(6), 1712-1726 (2004).
-
(2004)
Proteomics
, vol.4
, Issue.6
, pp. 1712-1726
-
-
Southan, C.1
-
41
-
-
0001644020
-
The human plasma proteome: History, character, and diagnostic prospects
-
Anderson NL, Anderson NG. The human plasma proteome: history, character, and diagnostic prospects. Mol. Cell Proteomics 1(11), 845-867 (2002).
-
(2002)
Mol. Cell Proteomics
, vol.1
, Issue.11
, pp. 845-867
-
-
Anderson, N.L.1
Anderson, N.G.2
-
42
-
-
0034056940
-
The dynamic range of protein expression: A challenge for proteomic research
-
Corthals GL, Wasinger VC, Hochstrasser DF, Sanchez JC. The dynamic range of protein expression: a challenge for proteomic research. Electrophoresis 21(6), 1104-1115 (2000).
-
(2000)
Electrophoresis
, vol.21
, Issue.6
, pp. 1104-1115
-
-
Corthals, G.L.1
Wasinger, V.C.2
Hochstrasser, D.F.3
Sanchez, J.C.4
-
43
-
-
0035106351
-
-
Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19(3), 242-247 (2001).
-
Washburn MP, Wolters D, Yates JR 3rd. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19(3), 242-247 (2001).
-
-
-
-
44
-
-
0036391454
-
-
Gygi SP, Rist B, Griffin TJ et al. Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. J. Proteome Res. 1(1), 47-54 (2002). • Introduction of the ICAT strategy in proteome analysis for the direct quantitative comparison of proteins in sample pairs by stable isotope labelling of cysteine containing peptides.
-
Gygi SP, Rist B, Griffin TJ et al. Proteome analysis of low-abundance proteins using multidimensional chromatography and isotope-coded affinity tags. J. Proteome Res. 1(1), 47-54 (2002). • Introduction of the ICAT strategy in proteome analysis for the direct quantitative comparison of proteins in sample pairs by stable isotope labelling of cysteine containing peptides.
-
-
-
-
45
-
-
0034923505
-
Analysis of proteins and proteomes by mass spectrometry
-
Mann M, Hendrickson RC, Pandey A. Analysis of proteins and proteomes by mass spectrometry. Annu. Rev. Biochem. 70, 437-473 (2001).
-
(2001)
Annu. Rev. Biochem
, vol.70
, pp. 437-473
-
-
Mann, M.1
Hendrickson, R.C.2
Pandey, A.3
-
47
-
-
21744435622
-
-
Küster B, Schirle M, Mallick P, Aebersold R. Scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol. 6(7), 577-583 (2005). • Brilliant review on the use of proteotypic peptides for protein identification.
-
Küster B, Schirle M, Mallick P, Aebersold R. Scoring proteomes with proteotypic peptide probes. Nat. Rev. Mol. Cell Biol. 6(7), 577-583 (2005). • Brilliant review on the use of proteotypic peptides for protein identification.
-
-
-
-
48
-
-
33745800293
-
Interpreting the protein language using proteomics
-
Jensen ON. Interpreting the protein language using proteomics. Nat. Rev. Mol. Cell Biol. 7(6), 391-403 (2006).
-
(2006)
Nat. Rev. Mol. Cell Biol
, vol.7
, Issue.6
, pp. 391-403
-
-
Jensen, O.N.1
-
49
-
-
0037338365
-
Proteomic analysis of post-translational modifications
-
Mann M, Jensen ON. Proteomic analysis of post-translational modifications. Nat. Biotechnol. 21(3), 255-261 (2003).
-
(2003)
Nat. Biotechnol
, vol.21
, Issue.3
, pp. 255-261
-
-
Mann, M.1
Jensen, O.N.2
-
50
-
-
13244283455
-
Glycan side chains on naturally presented MHC class II ligands
-
Dengjel J, Rammensee HG, Stevanovic S. Glycan side chains on naturally presented MHC class II ligands. J. Mass Spectrom. 40(1), 100-104 (2005).
-
(2005)
J. Mass Spectrom
, vol.40
, Issue.1
, pp. 100-104
-
-
Dengjel, J.1
Rammensee, H.G.2
Stevanovic, S.3
-
51
-
-
0033864113
-
Lectin purified human class I MHC-derived peptides: Evidence for presentation of glycopeptides in vivo
-
Kastrup IB, Stevanovic S, Arsequell G et al. Lectin purified human class I MHC-derived peptides: evidence for presentation of glycopeptides in vivo. Tissue Antigens 56(2), 129-135 (2000).
-
(2000)
Tissue Antigens
, vol.56
, Issue.2
, pp. 129-135
-
-
Kastrup, I.B.1
Stevanovic, S.2
Arsequell, G.3
-
52
-
-
0028318850
-
Recognition of carbohydrate by major histocompatibility complex class I-restricted, glycopeptide-specific cytotoxic T lymphocytes
-
Haurum JS, Arsequell G, Lellouch AC et al. Recognition of carbohydrate by major histocompatibility complex class I-restricted, glycopeptide-specific cytotoxic T lymphocytes. J. Exp. Med. 180(2), 739-744 (1994).
-
(1994)
J. Exp. Med
, vol.180
, Issue.2
, pp. 739-744
-
-
Haurum, J.S.1
Arsequell, G.2
Lellouch, A.C.3
-
53
-
-
30044439229
-
Post-translational modifications of naturally processed MHC-binding epitopes
-
Engelhard VH, Altrich-Vanlith M, Ostankovitch M, Zarling AL. Post-translational modifications of naturally processed MHC-binding epitopes. Curr. Opin. Immunol. 18(1), 92-97 (2006).
-
(2006)
Curr. Opin. Immunol
, vol.18
, Issue.1
, pp. 92-97
-
-
Engelhard, V.H.1
Altrich-Vanlith, M.2
Ostankovitch, M.3
Zarling, A.L.4
-
55
-
-
10644231762
-
Challenges in mass spectrometry-based proteomics
-
Reinders J, Lewandrowski U, Moebius J et al. Challenges in mass spectrometry-based proteomics. Proteomics 4(12), 3686-3703 (2004).
-
(2004)
Proteomics
, vol.4
, Issue.12
, pp. 3686-3703
-
-
Reinders, J.1
Lewandrowski, U.2
Moebius, J.3
-
56
-
-
1142269466
-
Immune recognition of a human renal cancer antigen through post-translational protein splicing
-
Hanada K, Yewdell JW, Yang JC. Immune recognition of a human renal cancer antigen through post-translational protein splicing. Nature 427(6971), 252-256 (2004).
-
(2004)
Nature
, vol.427
, Issue.6971
, pp. 252-256
-
-
Hanada, K.1
Yewdell, J.W.2
Yang, J.C.3
-
57
-
-
29144476815
-
SNEP: SNP-derived epitope prediction program for minor H antigens
-
Schuler MM, Dönnes P, Nastke MD et al. SNEP: SNP-derived epitope prediction program for minor H antigens. Immunogenetics 57(11), 816-820 (2005).
-
(2005)
Immunogenetics
, vol.57
, Issue.11
, pp. 816-820
-
-
Schuler, M.M.1
Dönnes, P.2
Nastke, M.D.3
-
58
-
-
2142644458
-
An antigenic peptide produced by peptide splicing in the proteasome
-
Vigneron N, Stroobant V, Chapiro J et al. An antigenic peptide produced by peptide splicing in the proteasome. Science 304(5670), 587-590 (2004).
-
(2004)
Science
, vol.304
, Issue.5670
, pp. 587-590
-
-
Vigneron, N.1
Stroobant, V.2
Chapiro, J.3
-
59
-
-
0029956173
-
Natural ligand motifs of closely related HLA-DR4 molecules predict features of rheumatoid arthritis associated peptides
-
Friede T, Gnau V, Jung G et al. Natural ligand motifs of closely related HLA-DR4 molecules predict features of rheumatoid arthritis associated peptides. Biochim. Biophys. Acta 1316(2), 85-101 (1996).
-
(1996)
Biochim. Biophys. Acta
, vol.1316
, Issue.2
, pp. 85-101
-
-
Friede, T.1
Gnau, V.2
Jung, G.3
-
60
-
-
0037530637
-
+ T cells that were isolated from a melanoma patient vaccinated with a MAGE-3 protein
-
+ T cells that were isolated from a melanoma patient vaccinated with a MAGE-3 protein. J. Immunol. 171(1), 219-225 (2003).
-
(2003)
J. Immunol
, vol.171
, Issue.1
, pp. 219-225
-
-
Zhang, Y.1
Chaux, P.2
Stroobant, V.3
-
61
-
-
14944368609
-
A cytosolic pathway for MHC class II-restricted antigen processing that is proteasome and TAP dependent
-
Tewari MK, Sinnathamby G, Rajagopal D, Eisenlohr LC. A cytosolic pathway for MHC class II-restricted antigen processing that is proteasome and TAP dependent. Nat. Immunol. 6(3), 287-294 (2005).
-
(2005)
Nat. Immunol
, vol.6
, Issue.3
, pp. 287-294
-
-
Tewari, M.K.1
Sinnathamby, G.2
Rajagopal, D.3
Eisenlohr, L.C.4
-
62
-
-
17044381835
-
Processing and presentation of HLA class I and II epitopes by dendritic cells after transfection with in vitro-transcribed MUC1 RNA
-
Dörfel D, Appel S, Grünebach F et al. Processing and presentation of HLA class I and II epitopes by dendritic cells after transfection with in vitro-transcribed MUC1 RNA. Blood 105(8), 3199-3205 (2005).
-
(2005)
Blood
, vol.105
, Issue.8
, pp. 3199-3205
-
-
Dörfel, D.1
Appel, S.2
Grünebach, F.3
-
63
-
-
0037960005
-
Major histocompatibility complex class II-restricted presentation of a cytosolic antigen by autophagy
-
Nimmerjahn F, Milosevic S, Behrends U et al. Major histocompatibility complex class II-restricted presentation of a cytosolic antigen by autophagy. Eur. J. Immunol. 33(5), 1250-1259 (2003).
-
(2003)
Eur. J. Immunol
, vol.33
, Issue.5
, pp. 1250-1259
-
-
Nimmerjahn, F.1
Milosevic, S.2
Behrends, U.3
-
64
-
-
20344402819
-
Autophagy and intracellular surveillance: Modulating MHC class II antigen presentation with stress
-
Crotzer VL, Blum JS. Autophagy and intracellular surveillance: Modulating MHC class II antigen presentation with stress. Proc. Natl Acad. Sci. USA 102(22), 7779-7780 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, Issue.22
, pp. 7779-7780
-
-
Crotzer, V.L.1
Blum, J.S.2
-
65
-
-
0034537290
-
Autophagy as a regulated pathway of cellular degradation
-
Klionsky DJ, Emr SD. Autophagy as a regulated pathway of cellular degradation. Science 290(5497), 1717-1721 (2000).
-
(2000)
Science
, vol.290
, Issue.5497
, pp. 1717-1721
-
-
Klionsky, D.J.1
Emr, S.D.2
-
66
-
-
5944236047
-
Two new proteases in the MHC class I processing pathway
-
Stoltze L, Schirle M, Schwarz G et al. Two new proteases in the MHC class I processing pathway. Nat. Immunol. 1(5), 413-418 (2000).
-
(2000)
Nat. Immunol
, vol.1
, Issue.5
, pp. 413-418
-
-
Stoltze, L.1
Schirle, M.2
Schwarz, G.3
-
67
-
-
33645499288
-
Proteasomes shape the repertoire of T cells participating in antigen-specific immune responses
-
Osterloh P, Linkemann K, Tenzer S et al. Proteasomes shape the repertoire of T cells participating in antigen-specific immune responses. Proc. Natl Acad. Sci. USA 103(13), 5042-5047 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, Issue.13
, pp. 5042-5047
-
-
Osterloh, P.1
Linkemann, K.2
Tenzer, S.3
-
68
-
-
0035422908
-
Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors
-
Luckey CJ, Marto JA, Partridge M et al. Differences in the expression of human class I MHC alleles and their associated peptides in the presence of proteasome inhibitors. J. Immunol. 167(3), 1212-1221 (2001).
-
(2001)
J. Immunol
, vol.167
, Issue.3
, pp. 1212-1221
-
-
Luckey, C.J.1
Marto, J.A.2
Partridge, M.3
-
69
-
-
0035863732
-
Quantitative and qualitative influences of tapasin on the class I peptide repertoire
-
Purcell AW, Gorman JJ, Garcia-Peydro M et al. Quantitative and qualitative influences of tapasin on the class I peptide repertoire. J. Immunol. 166(2), 1016-1027 (2001).
-
(2001)
J. Immunol
, vol.166
, Issue.2
, pp. 1016-1027
-
-
Purcell, A.W.1
Gorman, J.J.2
Garcia-Peydro, M.3
-
70
-
-
0026576422
-
HLA-A2 molecules in an antigen-processing mutant cell contain signal sequence-derived peptides
-
Wei ML, Cresswell P. HLA-A2 molecules in an antigen-processing mutant cell contain signal sequence-derived peptides. Nature 356(6368), 443-446 (1992).
-
(1992)
Nature
, vol.356
, Issue.6368
, pp. 443-446
-
-
Wei, M.L.1
Cresswell, P.2
-
71
-
-
0026521557
-
HLA-A2.1-associated peptides from a mutant cell line: A second pathway of antigen presentation
-
Henderson RA, Michel H, Sakaguchi K et al. HLA-A2.1-associated peptides from a mutant cell line: a second pathway of antigen presentation. Science 255(5049), 1264-1266 (1992).
-
(1992)
Science
, vol.255
, Issue.5049
, pp. 1264-1266
-
-
Henderson, R.A.1
Michel, H.2
Sakaguchi, K.3
-
72
-
-
33845901521
-
TAP-independent HLA ligands: Characterization and quantification by differential mass spectrometry
-
Presented at:, Kiel, Germany
-
Weinzierl AO, Sigurdardottir D, Rammensee HG, Stevanovic S. TAP-independent HLA ligands: characterization and quantification by differential mass spectrometry. Presented at: Conference proceedings Joint Annual Meeting of the German and Scandinavian Societies, Kiel, Germany (2005).
-
(2005)
Conference proceedings Joint Annual Meeting of the German and Scandinavian Societies
-
-
Weinzierl, A.O.1
Sigurdardottir, D.2
Rammensee, H.G.3
Stevanovic, S.4
-
73
-
-
3142681616
-
Dissection of the HLA-DR4 peptide repertoire in endocrine epithelial cells: Strong influence of invariant chain and HLA-DM expression on the nature of ligands
-
Muntasell A, Carrascal M, Alvarez I et al. Dissection of the HLA-DR4 peptide repertoire in endocrine epithelial cells: strong influence of invariant chain and HLA-DM expression on the nature of ligands. J. Immunol. 173(2), 1085-1093 (2004).
-
(2004)
J. Immunol
, vol.173
, Issue.2
, pp. 1085-1093
-
-
Muntasell, A.1
Carrascal, M.2
Alvarez, I.3
-
74
-
-
14944368161
-
MHC class I down-regulation: Tumour escape from immune surveillance? (review)
-
Bubenik J. MHC class I down-regulation: tumour escape from immune surveillance? (review). Int. J. Oncol. 25(2), 487-491 (2004).
-
(2004)
Int. J. Oncol
, vol.25
, Issue.2
, pp. 487-491
-
-
Bubenik, J.1
-
75
-
-
26244439658
-
Viral modulation of antigen presentation: Manipulation of cellular targets in the ER and beyond
-
Lilley BN, Ploegh HL. Viral modulation of antigen presentation: manipulation of cellular targets in the ER and beyond. Immunol. Rev. 207, 126-144 (2005).
-
(2005)
Immunol. Rev
, vol.207
, pp. 126-144
-
-
Lilley, B.N.1
Ploegh, H.L.2
-
76
-
-
33646704729
-
Radiation modulates the peptide repertoire, enhances MHC class I expression, and induces successful antitumor immunotherapy
-
Reits EA, Hodge JW, Herberts CA et al. Radiation modulates the peptide repertoire, enhances MHC class I expression, and induces successful antitumor immunotherapy. J. Exp. Med. 203(5), 1259-1271 (2006).
-
(2006)
J. Exp. Med
, vol.203
, Issue.5
, pp. 1259-1271
-
-
Reits, E.A.1
Hodge, J.W.2
Herberts, C.A.3
-
77
-
-
2542526311
-
Identification of C-met oncogene as a broadly expressed tumor-associated antigen recognized by cytotoxic T-lymphocytes
-
Schag K, Schmidt SM, Müller MR et al. Identification of C-met oncogene as a broadly expressed tumor-associated antigen recognized by cytotoxic T-lymphocytes. Clin. Cancer Res. 10(11), 3658-3666 (2004).
-
(2004)
Clin. Cancer Res
, vol.10
, Issue.11
, pp. 3658-3666
-
-
Schag, K.1
Schmidt, S.M.2
Müller, M.R.3
-
78
-
-
10744230512
-
Induction of adipophilin-specific cytotoxic T lymphocytes using a novel HLA-A2-binding peptide that mediates tumor cell lysis
-
Schmidt SM, Schag K, Müller MR et al. Induction of adipophilin-specific cytotoxic T lymphocytes using a novel HLA-A2-binding peptide that mediates tumor cell lysis. Cancer Res. 64(3), 1164-1170 (2004).
-
(2004)
Cancer Res
, vol.64
, Issue.3
, pp. 1164-1170
-
-
Schmidt, S.M.1
Schag, K.2
Müller, M.R.3
-
79
-
-
0028304337
-
Identification of a peptide recognized by five melanoma-specific human cytotoxic T cell lines
-
Cox AL, Skipper J, Chen Y et al. Identification of a peptide recognized by five melanoma-specific human cytotoxic T cell lines. Science 264(5159), 716-719 (1994).
-
(1994)
Science
, vol.264
, Issue.5159
, pp. 716-719
-
-
Cox, A.L.1
Skipper, J.2
Chen, Y.3
-
80
-
-
0034793424
-
Phase I trial of a melanoma vaccine with gp100(280-288) peptide and tetanus helper peptide in adjuvant: Immunologic and clinical outcomes
-
Slingluff CL Jr, Yamshchikov G, Neese P et al. Phase I trial of a melanoma vaccine with gp100(280-288) peptide and tetanus helper peptide in adjuvant: immunologic and clinical outcomes. Clin. Cancer Res. 7(10), 3012-3024 (2001).
-
(2001)
Clin. Cancer Res
, vol.7
, Issue.10
, pp. 3012-3024
-
-
Slingluff Jr, C.L.1
Yamshchikov, G.2
Neese, P.3
-
81
-
-
0642311904
-
Clinical and immunologic results of a randomized Phase II trial of vaccination using four melanoma peptides either administered in granulocyte-macrophage colony-stimulating factor in adjuvant or pulsed on dendritic cells
-
Slingluff CL, Jr., Petroni GR, Yamshchikov GV et al. Clinical and immunologic results of a randomized Phase II trial of vaccination using four melanoma peptides either administered in granulocyte-macrophage colony-stimulating factor in adjuvant or pulsed on dendritic cells. J. Clin. Oncol. 21(21), 4016-4026 (2003).
-
(2003)
J. Clin. Oncol
, vol.21
, Issue.21
, pp. 4016-4026
-
-
Slingluff Jr., C.L.1
Petroni, G.R.2
Yamshchikov, G.V.3
-
83
-
-
20244366111
-
Adoptive cell transfer therapy following non-myeloablative but lymphodepleting chemotherapy for the treatment of patients with refractory metastatic melanoma
-
Dudley ME, Wunderlich JR, Yang JC et al. Adoptive cell transfer therapy following non-myeloablative but lymphodepleting chemotherapy for the treatment of patients with refractory metastatic melanoma. J. Clin. Oncol. 23(10), 2346-2357 (2005).
-
(2005)
J. Clin. Oncol
, vol.23
, Issue.10
, pp. 2346-2357
-
-
Dudley, M.E.1
Wunderlich, J.R.2
Yang, J.C.3
-
84
-
-
0035872440
-
A MAGE-A1 HLA-A A*0201 epitope identified by mass spectrometry
-
Pascolo S, Schirle M, Gückel B et al. A MAGE-A1 HLA-A A*0201 epitope identified by mass spectrometry. Cancer Res. 61(10), 4072-4077 (2001).
-
(2001)
Cancer Res
, vol.61
, Issue.10
, pp. 4072-4077
-
-
Pascolo, S.1
Schirle, M.2
Gückel, B.3
-
85
-
-
0033847263
-
Identification of tumor-associated MHC class I ligands by a novel T cell-independent approach
-
Schirle M, Keilholz W, Weber B et al. Identification of tumor-associated MHC class I ligands by a novel T cell-independent approach. Eur. J. Immunol. 30(8), 2216-2225 (2000).
-
(2000)
Eur. J. Immunol
, vol.30
, Issue.8
, pp. 2216-2225
-
-
Schirle, M.1
Keilholz, W.2
Weber, B.3
-
87
-
-
1842529550
-
-
Lemmel C, Weik S, Eberle U et al. Differential quantitative analysis of MHC ligands by mass spectrometry using stable isotope labeling. Nat. Biotechnol. 22(4), 450-454 (2004). •• Introduction of N-terminal labelling based on stable isotopes, a protocol useful for relative quantification of MHC ligands from two different sources.
-
Lemmel C, Weik S, Eberle U et al. Differential quantitative analysis of MHC ligands by mass spectrometry using stable isotope labeling. Nat. Biotechnol. 22(4), 450-454 (2004). •• Introduction of N-terminal labelling based on stable isotopes, a protocol useful for relative quantification of MHC ligands from two different sources.
-
-
-
-
88
-
-
70449351634
-
LC-MS based protein and peptide quantification using stable isotope labels: From ICAT in general to differential N-terminal coding (dNIC) in Special
-
In Press
-
Weinzierl AO, Stevanovic S. LC-MS based protein and peptide quantification using stable isotope labels: from ICAT in general to differential N-terminal coding (dNIC) in Special. Biotechnol. Genet. Eng. Rev. 23 (In Press) (2006).
-
(2006)
Biotechnol. Genet. Eng. Rev
, pp. 23
-
-
Weinzierl, A.O.1
Stevanovic, S.2
-
89
-
-
0030895921
-
A comparison of selected mRNA and protein abundances in human liver
-
Anderson L, Seilhamer J. A comparison of selected mRNA and protein abundances in human liver. Electrophoresis 18(3-4), 533-537 (1997).
-
(1997)
Electrophoresis
, vol.18
, Issue.3-4
, pp. 533-537
-
-
Anderson, L.1
Seilhamer, J.2
-
90
-
-
0033016717
-
-
Gygi SP, Rochon Y, Franza BR, Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell Biol. 19(3), 1720-1730 (1999). • Demonstration of an insufficient correlation of protein and mRNA levels in yeast.
-
Gygi SP, Rochon Y, Franza BR, Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell Biol. 19(3), 1720-1730 (1999). • Demonstration of an insufficient correlation of protein and mRNA levels in yeast.
-
-
-
-
91
-
-
2542550392
-
Comparison of proteomic and genomic analyses of the human breast cancer cell line T47D and the antiestrogen-resistant derivative T47D-r
-
Huber M, Bahr I, Kratzschmar JR et al. Comparison of proteomic and genomic analyses of the human breast cancer cell line T47D and the antiestrogen-resistant derivative T47D-r. Mol. Cell Proteomics 3(1), 43-55 (2004).
-
(2004)
Mol. Cell Proteomics
, vol.3
, Issue.1
, pp. 43-55
-
-
Huber, M.1
Bahr, I.2
Kratzschmar, J.R.3
-
92
-
-
1042278905
-
Proteasome and peptidase function in MHC-class-I-mediated antigen presentation
-
Kloetzel PM, Ossendorp F. Proteasome and peptidase function in MHC-class-I-mediated antigen presentation. Curr. Opin. Immunol. 16(1), 76-81 (2004).
-
(2004)
Curr. Opin. Immunol
, vol.16
, Issue.1
, pp. 76-81
-
-
Kloetzel, P.M.1
Ossendorp, F.2
-
93
-
-
0035060172
-
At the crossroads of cell biology and immunology: DRiPs and other sources of peptide ligands for MHC class I molecules
-
Yewdell JW, Schubert U, Bennink JR. At the crossroads of cell biology and immunology: DRiPs and other sources of peptide ligands for MHC class I molecules. J.Cell Sci. 114(Pt 5), 845-851 (2001).
-
(2001)
J.Cell Sci
, vol.114
, Issue.PART 5
, pp. 845-851
-
-
Yewdell, J.W.1
Schubert, U.2
Bennink, J.R.3
-
94
-
-
33644701579
-
The turnover kinetics of MHC peptides of human cancer cells
-
Milner E, Barnea E, Beer I, Admon A. The turnover kinetics of MHC peptides of human cancer cells. Mol. Cell Proteomics 5(2), 357-365 (2006).
-
(2006)
Mol. Cell Proteomics
, vol.5
, Issue.2
, pp. 357-365
-
-
Milner, E.1
Barnea, E.2
Beer, I.3
Admon, A.4
-
95
-
-
0033725154
-
Export of antigenic peptides from the endoplasmic reticulum intersects with retrograde protein translocation through the Sec61p channel
-
Koopmann JO, Albring J, Huter E et al. Export of antigenic peptides from the endoplasmic reticulum intersects with retrograde protein translocation through the Sec61p channel. Immunity 13(1), 117-127 (2000).
-
(2000)
Immunity
, vol.13
, Issue.1
, pp. 117-127
-
-
Koopmann, J.O.1
Albring, J.2
Huter, E.3
-
96
-
-
0036493224
-
A question of size: The eukaryotic proteome and the problems in defining it
-
Harrison PM, Kumar A, Lang N et al. A question of size: the eukaryotic proteome and the problems in defining it. Nucleic Acids Res. 30(5), 1083-1090 (2002).
-
(2002)
Nucleic Acids Res
, vol.30
, Issue.5
, pp. 1083-1090
-
-
Harrison, P.M.1
Kumar, A.2
Lang, N.3
-
97
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S et al. The transcriptional landscape of the mammalian genome. Science 309(5740), 1559-1563 (2005).
-
(2005)
Science
, vol.309
, Issue.5740
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
-
98
-
-
0038007122
-
Large-scale analysis of HLA peptides presented by HLA-Cw4
-
Buchsbaum S, Barnea E, Dassau L et al. Large-scale analysis of HLA peptides presented by HLA-Cw4. Immunogenetics 55(3), 172-176 (2003).
-
(2003)
Immunogenetics
, vol.55
, Issue.3
, pp. 172-176
-
-
Buchsbaum, S.1
Barnea, E.2
Dassau, L.3
-
99
-
-
10944270781
-
Identification of a naturally processed cyclin D1 T-helper epitope by a novel combination of HLA class II targeting and differential mass spectrometry
-
Dengjel J, Decker P, Schoor O et al. Identification of a naturally processed cyclin D1 T-helper epitope by a novel combination of HLA class II targeting and differential mass spectrometry. Eur. J. Immunol. 34(12), 3644-3651 (2004).
-
(2004)
Eur. J. Immunol
, vol.34
, Issue.12
, pp. 3644-3651
-
-
Dengjel, J.1
Decker, P.2
Schoor, O.3
|