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Volumn 71, Issue 1, 2007, Pages 107-118

Two-sample comparison based on prediction error, with applications to candidate gene association studies

Author keywords

Bootstrap; Candidate gene association studies; Classification tree; Haplotype; Prediction error

Indexed keywords

INTERLEUKIN 10;

EID: 33845235260     PISSN: 00034800     EISSN: 14691809     Source Type: Journal    
DOI: 10.1111/j.1469-1809.2006.00306.x     Document Type: Article
Times cited : (8)

References (39)
  • 1
    • 4243687930 scopus 로고    scopus 로고
    • Estimation of haplotype frequencies from diploid data
    • Abecasis, G. R., Martin, R., & Lewitzky, L. (2001) Estimation of haplotype frequencies from diploid data. Am J Hum Genet 69 (Suppl), 198.
    • (2001) Am J Hum Genet , vol.69 , Issue.SUPPL. , pp. 198
    • Abecasis, G.R.1    Martin, R.2    Lewitzky, L.3
  • 2
    • 0035058585 scopus 로고    scopus 로고
    • Haplotypes vs. single marker linkage disequilibrium tests: What do we gain?
    • Akey, J., Jin, L. & Xiong, M. M. (2001) Haplotypes vs. single marker linkage disequilibrium tests: What do we gain? Eur J Hum Genet 9, 291-300.
    • (2001) Eur J Hum Genet , vol.9 , pp. 291-300
    • Akey, J.1    Jin, L.2    Xiong, M.M.3
  • 3
    • 18444417980 scopus 로고    scopus 로고
    • MDR and PRP: A comparison of methods for high-order genotype-phenotype
    • associations
    • Bastone, L., Reilly, M., Rader, D. J. & Foulkes, A. S. (2004) MDR and PRP: A comparison of methods for high-order genotype-phenotype associations. Hum Hered 58, 82-92. associations
    • (2004) Hum Hered , vol.58 , pp. 82-92
    • Bastone, L.1    Reilly, M.2    Rader, D.J.3    Foulkes, A.S.4
  • 4
    • 3042653185 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of haplotype frequencies in nuclear families
    • Becker, T. & Knapp, M. (2004) Maximum-likelihood estimation of haplotype frequencies in nuclear families. Genet Epidemiol 27, 21-32.
    • (2004) Genet Epidemiol , vol.27 , pp. 21-32
    • Becker, T.1    Knapp, M.2
  • 6
    • 10044279127 scopus 로고    scopus 로고
    • The use of unphased multilocus genotype data in indirect association studies
    • Clayton, D., Chapman, J., Pajukanta, P. & Cooper, J. (2004) The use of unphased multilocus genotype data in indirect association studies. Genet Epidemiol 27, 415-428.
    • (2004) Genet Epidemiol , vol.27 , pp. 415-428
    • Clayton, D.1    Chapman, J.2    Pajukanta, P.3    Cooper, J.4
  • 7
    • 10044292874 scopus 로고    scopus 로고
    • SNPs, haplotypes, and model selection in a candidate gene region: The SMPle analysis for multilocus data
    • Conti, D. V. & Gauderman, J. (2004) SNPs, haplotypes, and model selection in a candidate gene region: The SMPle analysis for multilocus data. Genet Epidemiol 27, 429-441.
    • (2004) Genet Epidemiol , vol.27 , pp. 429-441
    • Conti, D.V.1    Gauderman, J.2
  • 8
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier, L. & Slatkin, M. (1995) Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12, 921-927.
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 9
    • 84950461478 scopus 로고
    • Estimating the error rate of a prediction rule: Some improvements on cross-validation
    • Efron, B. (1983) Estimating the error rate of a prediction rule: Some improvements on cross-validation. J Am Stat Assoc 78, 316-331.
    • (1983) J Am Stat Assoc , vol.78 , pp. 316-331
    • Efron, B.1
  • 10
    • 0031536511 scopus 로고    scopus 로고
    • Improvements on cross-validation: The. 632+ bootstrap method
    • Efron, B. & Tibshirani, R. (1997) Improvements on cross-validation: the. 6332+ bootstrap method. J Am Stat Assoc 92, 548-560.
    • (1997) J Am Stat Assoc , vol.92 , pp. 548-560
    • Efron, B.1    Tibshirani, R.2
  • 11
    • 33644751679 scopus 로고    scopus 로고
    • High resolution association mapping of quantitative trait loci, a population based approach
    • (in press)
    • Fan, R. Z., Jung, J. & Jin, J. (2006) High resolution association mapping of quantitative trait loci, a population based approach. Genetics (in press).
    • (2006) Genetics
    • Fan, R.Z.1    Jung, J.2    Jin, J.3
  • 12
  • 13
    • 28444452344 scopus 로고    scopus 로고
    • Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies
    • Medical Imaging, LNCS
    • Golland, P. & Fischl, B. (2003) Permutation Tests for Classification: Towards Statistical Significance in Image-Based Studies. Proc. IPMI'2003: The 18th Intern. Conf. Inform. Process. Medical Imaging, LNCS 2732, 330-341.
    • (2003) Process. Medical Imaging , vol.2732 , pp. 330-341
    • Golland, P.1    Fischl, B.2
  • 16
    • 0347992868 scopus 로고    scopus 로고
    • Tests for Associating Haplotypes with General Phenotype Data: Application to Asthma Genetics
    • Horvath, S., Xu, X., Lake, S., Silverman, E., Weiss, S. & Laird, N. (2004) Tests for Associating Haplotypes with General Phenotype Data: Application to Asthma Genetics. Genet Epidemiol 26: 61-69.
    • (2004) Genet Epidemiol , vol.26 , pp. 61-69
    • Horvath, S.1    Xu, X.2    Lake, S.3    Silverman, E.4    Weiss, S.5    Laird, N.6
  • 18
    • 1542314303 scopus 로고    scopus 로고
    • Impact of genotyping error on type I error rate of the haplotype-sharing transmission/disequilibrium test (HS-TDT)
    • Knapp, M. & Becker, T. (2004) Impact of genotyping error on type I error rate of the haplotype-sharing transmission/disequilibrium test (HS-TDT). Am J Hum Genet 74, 589-591.
    • (2004) Am J Hum Genet , vol.74 , pp. 589-591
    • Knapp, M.1    Becker, T.2
  • 19
    • 0033814928 scopus 로고    scopus 로고
    • Implementing a unified approach to family based tests of association
    • Laird, N., Horvath, S. & Xu, X. (2000) Implementing a unified approach to family based tests of association. Genet Epidemiol 19 (Suppl 1): S36-S42.
    • (2000) Genet Epidemiol , vol.19 , Issue.SUPPL. 1
    • Laird, N.1    Horvath, S.2    Xu, X.3
  • 20
    • 0033912563 scopus 로고    scopus 로고
    • Haplotype fine mapping by evolutionary trees
    • Lam, J. C., Roader, K. & Devlin, B. (2000) Haplotype fine mapping by evolutionary trees. Am J Hum Genet 66, 659-673.
    • (2000) Am J Hum Genet , vol.66 , pp. 659-673
    • Lam, J.C.1    Roader, K.2    Devlin, B.3
  • 22
    • 33745147888 scopus 로고    scopus 로고
    • Assessing performance of prediction rules in machine learning
    • Martin, R. & Yu, K. (2006) Assessing performance of prediction rules in machine learning. Pharmacogenomics 7, 543-550.
    • (2006) Pharmacogenomics , vol.7 , pp. 543-550
    • Martin, R.1    Yu, K.2
  • 23
    • 0033927575 scopus 로고    scopus 로고
    • Removing the sample restrictions from family-based test of association for quantitative trait locus
    • Monks, S. A. & Kaplan, N. L. (2000) Removing the sample restrictions from family-based test of association for quantitative trait locus. Am J Hum Genet 66 576-592.
    • (2000) Am J Hum Genet , vol.66 , pp. 576-592
    • Monks, S.A.1    Kaplan, N.L.2
  • 24
    • 0036792816 scopus 로고    scopus 로고
    • On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles
    • Morris, R. W. & Kaplan, N. L. (2002) On the advantage of haplotype analysis in the presence of multiple disease susceptibility alleles. Genet Epidemiol 23, 221-233.
    • (2002) Genet Epidemiol , vol.23 , pp. 221-233
    • Morris, R.W.1    Kaplan, N.L.2
  • 25
    • 0035227182 scopus 로고    scopus 로고
    • Classification methods for confronting heterogeneity
    • Province, M. A., Shannon, W. D. & Rao, D. C. (2001) Classification methods for confronting heterogeneity. Adv Genet 42, 273-286.
    • (2001) Adv Genet , vol.42 , pp. 273-286
    • Province, M.A.1    Shannon, W.D.2    Rao, D.C.3
  • 26
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • Ritchie, M. D., Hahn, L. W., Roodi, N., Bailey, L. R., Dupont, D. W., Parl, F. F. & Moore, J. H. (2001) Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Am J Hum Genet 69, 138-147.
    • (2001) Am J Hum Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, D.W.5    Parl, F.F.6    Moore, J.H.7
  • 28
    • 10044294770 scopus 로고    scopus 로고
    • Evaluating associations of haplotypes with traits
    • Schaid, D. J. (2004) Evaluating associations of haplotypes with traits. Genet Epidemiol 27, 348-364.
    • (2004) Genet Epidemiol , vol.27 , pp. 348-364
    • Schaid, D.J.1
  • 29
    • 27644468433 scopus 로고    scopus 로고
    • Tests of association between quantitative traits and haplotypes in a reduced-dimensional space
    • Sha, Q., Dong, J., Jiang, R. & Zhang, S. L. (2005) Tests of association between quantitative traits and haplotypes in a reduced-dimensional space. Ann Hum Genet 69, 715-732.
    • (2005) Ann Hum Genet , vol.69 , pp. 715-732
    • Sha, Q.1    Dong, J.2    Jiang, R.3    Zhang, S.L.4
  • 30
    • 0035081840 scopus 로고    scopus 로고
    • Tree-based recursive partitioning methods for subdividing sibpairs into relatively more homogeneous subgroups
    • Shannon, W. D., Province, M. A. & Rao, D. C. (2001) Tree-based recursive partitioning methods for subdividing sibpairs into relatively more homogeneous subgroups. Genet Epidemiol 20, 295-306.
    • (2001) Genet Epidemiol , vol.20 , pp. 295-306
    • Shannon, W.D.1    Province, M.A.2    Rao, D.C.3
  • 31
    • 0027377799 scopus 로고
    • The transmission test for linkage disequilibrium: The insulin gene and insulin-dependent diabetes mellitus (IDDM)
    • Spielman, R. S., McGinnis, R. E. & Ewens, W. J. (1993) The transmission test for linkage disequilibrium: The insulin gene and insulin-dependent diabetes mellitus (IDDM). Am J Hum Genet 52, 506-516.
    • (1993) Am J Hum Genet , vol.52 , pp. 506-516
    • Spielman, R.S.1    McGinnis, R.E.2    Ewens, W.J.3
  • 32
    • 0003516711 scopus 로고    scopus 로고
    • An introduction to recursive partitioning using the RPART routines
    • Technical Report Series No. 61, Department of Health Science Research, Mayo Clinic, Rochester, Minnesota
    • Therneau, T. M. & Atkinson, E. J. (1997) An introduction to recursive partitioning using the RPART routines. Technical Report Series No. 61, Department of Health Science Research, Mayo Clinic, Rochester, Minnesota
    • (1997)
    • Therneau, T.M.1    Atkinson, E.J.2
  • 33
    • 7444256665 scopus 로고    scopus 로고
    • Genetic association mapping under founder heterogeneity via weighted haplotype similarity analysis in candidate genes
    • Yu, K., Gu, C. C., Province, M. A., Xiong, C. J. & Rao, D. C. (2004) Genetic association mapping under founder heterogeneity via weighted haplotype similarity analysis in candidate genes. Genet Epidemiol 27, 182-191.
    • (2004) Genet Epidemiol , vol.27 , pp. 182-191
    • Yu, K.1    Gu, C.C.2    Province, M.A.3    Xiong, C.J.4    Rao, D.C.5
  • 34
    • 22244450685 scopus 로고    scopus 로고
    • A haplotype similarity based transmission/disequibrium test under founder heterogeneity
    • Yu, K., Zhang, S. L., Borecki, I., Kraja, A., Xiong, C. J., Myers, R. & Province, M. A. (2005a) A haplotype similarity based transmission/ disequibrium test under founder heterogeneity. Ann Hum Genet 69, 455-467.
    • (2005) Ann Hum Genet , vol.69 , pp. 455-467
    • Yu, K.1    Zhang, S.L.2    Borecki, I.3    Kraja, A.4    Xiong, C.J.5    Myers, R.6    Province, M.A.7
  • 35
    • 24944519425 scopus 로고    scopus 로고
    • Using tree-based recursive partitioning methods to group haplotypes in association studies
    • Yu, K., Xu, J., Rao, D. C. & Province, M. A. (2005b) Using tree-based recursive partitioning methods to group haplotypes in association studies. Ann Hum Genet 69, 577-589.
    • (2005) Ann Hum Genet , vol.69 , pp. 577-589
    • Yu, K.1    Xu, J.2    Rao, D.C.3    Province, M.A.4
  • 36
    • 0033680875 scopus 로고    scopus 로고
    • Use of classification trees for association studies
    • Zhang, H. P. & Bonney, G. (2000) Use of classification trees for association studies. Genet Epidemiol 19, 323-332.
    • (2000) Genet Epidemiol , vol.19 , pp. 323-332
    • Zhang, H.P.1    Bonney, G.2
  • 38
    • 0041385677 scopus 로고    scopus 로고
    • Transmission/disequibrium test based on haplotype sharing for tightly linked markers
    • Zhang, S. L., Sha, Q., Chen, H. S., Dong, J. & Jiang, R. (2003) Transmission/disequibrium test based on haplotype sharing for tightly linked markers. Am J Hum Genet 73, 566-589.
    • (2003) Am J Hum Genet , vol.73 , pp. 566-589
    • Zhang, S.L.1    Sha, Q.2    Chen, H.S.3    Dong, J.4    Jiang, R.5
  • 39
    • 0037340445 scopus 로고    scopus 로고
    • Haplotype analysis in population genetics and association studies
    • Zhao, H., Pfeiffer, R. & Gail, M. H. (2003) Haplotype analysis in population genetics and association studies. Pharmacogenomics 4, 171-178.
    • (2003) Pharmacogenomics , vol.4 , pp. 171-178
    • Zhao, H.1    Pfeiffer, R.2    Gail, M.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.