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Phylogenetic identification and in situ detection of individual microbial cells without cultivation
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Amann, R., Ludwig, W. and Schleifer, K.H. (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143-169.
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Amann, R.1
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5
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Cyanine dye labeling reagents - Carboxy-methylindocyanine succinimidyl esters
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Southwick, P.L., Ernst, L.A., Tauriello, E.W., Parker, S.R., Mujumdar, R.B., Mujumdar, S.R., Clever, H.A. and Waggoner, A.S. (1990) Cyanine dye labeling reagents - carboxy-methylindocyanine succinimidyl esters. Cytometry 11, 418-430.
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6
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In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes
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A.D.L. Akkermans, J.D. van Elsas and F.J. de Bruijn (eds.), Kluwer Academic Publishers, Dordrecht, The Netherlands
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Amann, R.I. (1995) In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In: Molecular Microbial Ecology Manual. A.D.L. Akkermans, J.D. van Elsas and F.J. de Bruijn (eds.), pp. 1-15. Kluwer Academic Publishers, Dordrecht, The Netherlands.
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Molecular Microbial Ecology Manual
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Amann, R.I.1
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7
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The ribosomal database project
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Maidak, B.L., Olsen, G.J., Larsen, N., Overbeek, R., McCaughey, M.J. and Woese, C.R. (1996) The ribosomal database project. Nucleic Acids Res. 24, 82-85.
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Woese, C.R.6
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8
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0029981542
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Database on the structure of large ribosomal subunit RNA
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De Rijk, P., Van de Peer, Y. and De Wachter, R. (1996) Database on the structure of large ribosomal subunit RNA. Nucleic Acids Res. 24, 92-97.
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9
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In preparation
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Strunk, O., Gross, O., Reichel, B., May, M., Hermann, S., Stuckmann, N., Nonhoff, B., Lenke, M., Ginhart, A., Vilbig, A., Ludwig, T., Bode, A., Schleifer, K.H. and Ludwig, W. ARB: a software environment for sequence data. In preparation.
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ARB: a Software Environment for Sequence Data
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Strunk, O.1
Gross, O.2
Reichel, B.3
May, M.4
Hermann, S.5
Stuckmann, N.6
Nonhoff, B.7
Lenke, M.8
Ginhart, A.9
Vilbig, A.10
Ludwig, T.11
Bode, A.12
Schleifer, K.H.13
Ludwig, W.14
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10
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Microbial ecology and evolution: A ribosomal RNA approach
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Olsen, G.J., Lane, D.J., Giovannoni, S.J., Pace, N.R. and Stahl, D.A. (1986) Microbial ecology and evolution: a ribosomal RNA approach. Ann. Rev. Microbiol. 40, 337-365.
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Olsen, G.J.1
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Pace, N.R.4
Stahl, D.A.5
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11
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0025877324
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Identification and phylogeny of uncultured bacterial endosymbionts
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Amann, R., Springer, N., Ludwig, W., Görtz, H.-D. and Schleifer, K.-H. (1991) Identification and phylogeny of uncultured bacterial endosymbionts. Nature 351, 161-164.
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(1991)
Nature
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Amann, R.1
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Ludwig, W.3
Görtz, H.-D.4
Schleifer, K.-H.5
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13
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0026520954
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Phylogenetic diversity and identification of nonculturable magnetotactic bacteria
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Spring, S., Amann, R., Ludwig, W., Schleifer, K.-H. and Petersen, N. (1992) Phylogenetic diversity and identification of nonculturable magnetotactic bacteria. Syst. Appl. Microbiol. 15, 116-122.
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Syst. Appl. Microbiol.
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Spring, S.1
Amann, R.2
Ludwig, W.3
Schleifer, K.-H.4
Petersen, N.5
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14
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0024005650
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Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology
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Stahl, D.A., Flesher, B., Mansfield, H.R. and Montgomery, L. (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54, 1079-1084.
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Stahl, D.A.1
Flesher, B.2
Mansfield, H.R.3
Montgomery, L.4
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15
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0026532736
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Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms
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Amann, R.I., Stromley, J., Devereux, R., Key, R. and Stahl, D.A. (1992) Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. Appl. Environ. Microbiol. 58, 614-623.
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Appl. Environ. Microbiol.
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Amann, R.I.1
Stromley, J.2
Devereux, R.3
Key, R.4
Stahl, D.A.5
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16
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0027460327
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Monitoring the enrichment and isolation of sulfate reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
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Kane, M.D., Poulsen, L.K. and Stahl, D.A. (1993) Monitoring the enrichment and isolation of sulfate reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences. Appl. Environ. Microbiol. 59, 682-686.
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Kane, M.D.1
Poulsen, L.K.2
Stahl, D.A.3
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17
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0029912111
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Population analysis in a denitrifying sand filter: Conventional and in situ identification of Paracoccus sp. in methanol-fed biofilms
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Neef, A., Zaglauer, A., Meier, H., Amann, R., Lemmer, H. and Schleifer, K.H. (1996) Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus sp. in methanol-fed biofilms. Appl. Environ. Microbiol. 62, 4329-4339.
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Appl. Environ. Microbiol.
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Neef, A.1
Zaglauer, A.2
Meier, H.3
Amann, R.4
Lemmer, H.5
Schleifer, K.H.6
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18
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0027299353
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Probing activated sludge with proteobacteria-specific oligonucleotides: Inadequacy of culture-dependent methods for describing microbial community structure
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Wagner, M., Amann, R., Lemmer, H. and Schleifer, K.H. (1993) Probing activated sludge with proteobacteria-specific oligonucleotides: inadequacy of culture-dependent methods for describing microbial community structure. Appl. Environ. Microbiol. 59, 1520-1525.
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Appl. Environ. Microbiol.
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Wagner, M.1
Amann, R.2
Lemmer, H.3
Schleifer, K.H.4
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19
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0028271364
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Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge
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Wagner, M., Erhart, R., Manz, W., Amann, R., Lemmer, H., Wedi, D. and Schleifer, K.H. (1994) Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl. Environ. Microbiol. 60, 792-800.
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Appl. Environ. Microbiol.
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Wagner, M.1
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Manz, W.3
Amann, R.4
Lemmer, H.5
Wedi, D.6
Schleifer, K.H.7
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20
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0029890507
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In situ visualization of high genetic diversity in a natural microbial community
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Amann, R., Snaidr, J., Wagner, M., Ludwig, W. and Schleifer, K.-H. (1996) In situ visualization of high genetic diversity in a natural microbial community. J. Bacteriol. 178, 3496-3500.
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J. Bacteriol.
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Amann, R.1
Snaidr, J.2
Wagner, M.3
Ludwig, W.4
Schleifer, K.-H.5
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21
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0029859085
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An optimized in situ hybridization protocol for planktonic bacteria
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Glöckner, F.O., Amann, R., Alfreider, A., Pernthaler, J., Psenner, R., Trebesius, K. and Schleifer, K.-H. (1996). An optimized in situ hybridization protocol for planktonic bacteria. System. Appl. Microbiol. 19, 403-406.
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(1996)
System. Appl. Microbiol.
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Glöckner, F.O.1
Amann, R.2
Alfreider, A.3
Pernthaler, J.4
Psenner, R.5
Trebesius, K.6
Schleifer, K.-H.7
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22
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0029663960
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Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake using in situ hybridization
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Alfreider, A., Pernthaler, J., Amann, R., Sattler, B., Glöckner, F.-O., Wille, A. and Psenner, R. (1996) Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake using in situ hybridization. Appl. Environ. Microbiol. 62, 2138-2144.
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(1996)
Appl. Environ. Microbiol.
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Alfreider, A.1
Pernthaler, J.2
Amann, R.3
Sattler, B.4
Glöckner, F.-O.5
Wille, A.6
Psenner, R.7
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