High polymorphism in Plasmodium vivax merozoite surface protein-5 (MSP5)

Parasitology

Volumn 133, Issue 6, 2006, Pages 661-672

  Gomez, A ^a,b   Suarez, C F ^a   Martinez, P ^a   Saravia, C ^a   Patarroyo, M A ^a,b  

^a FUNDACIÓN INSTITUTO DE INMUNOLOGÍA DE COLOMBIA FIDIC   (Colombia)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

Author keywords

Antigenic diversity; Merozoite surface protein 5 (MSP5); Plasmodium vivax; Polymorphism; Selection

Indexed keywords

MEROZOITE SURFACE PROTEIN 5; PROTEIN; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; COLOMBIA; CONTROLLED STUDY; DISEASE TRANSMISSION; EXON; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC RECOMBINATION; GENETIC SELECTION; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; INTRON; LABORATORY TEST; MALARIA; MEROZOITE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM VIVAX; PRIORITY JOURNAL; PROTEIN DOMAIN;

AMINO ACID SEQUENCE; ANIMALS; CLUSTER ANALYSIS; COLOMBIA; HUMANS; MALARIA, VIVAX; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; PLASMODIUM VIVAX; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; SELECTION (GENETICS); SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

PLASMODIUM VIVAX;

EID: 33751114143     PISSN: 00311820     EISSN: 14698161     Source Type: Journal    
DOI: 10.1017/S0031182006001168     Document Type: Article

References (65)

1. Aguileta, G., Bielawski, J. P. and Yang, Z. (2004). Gene conversion and functional divergence in the beta-globin gene family. Journal of Molecular Evolution 59, 177-189.
2. Applied-Biosystems (1993). Sequence Navigator v1.0.1. Foster City CA (USA).
3. Babiker, H. A., Lines, J., Hill, W. G. and Walliker, D. (1997). Population structure of Plasmodium falciparum in villages with different malaria endemicity in east Africa. American Journal of Tropical Medicine and Hygiene 56, 141-147.
4. Barnwell, J. W., Nichols, M. E. and Rubinstein, P. (1989). In vitro evaluation of the role of the Duffy blood group in erythrocyte invasion by Plasmodium vivax. Journal of Experimental Medicine 169, 1795-1802.
5. Benet, A., Tavul, L., Reeder, J. C. and Cortes, A. (2004). Diversity of Plasmodium falciparum vaccine candidate merozoite surface protein 4 (MSP4) in a natural population. Molecular and Biochemical Parasitology 134, 275-280.
6. Black, C. G., Barnwell, J. W., Huber, C. S., Galinski, M. R. and Coppel, R. L. (2002). The Plasmodium vivax homologues of merozoite surface proteins 4 and 5 from Plasmodium falciparum are expressed at different locations in the merozoite. Molecular and Biochemical Parasitology 120, 215-224.
7. Carvalho, L. J., Daniel-Ribeiro, C. T. and Goto, H. (2002). Malaria vaccine: candidate antigens, mechanisms, constraints and prospects. Scandinavian Journal of Immunology 56, 327-343.
8. Conway, D. J., Roper, C., Oduola, A. M., Arnot, D. E., Kremsner, P. G., Grobusch, M. P., Curtis, C. F. and Greenwood, B. M. (1999). High recombination rate in natural populations of Plasmodium falciparum. Proceedings of the National Academy of Sciences, USA 96, 4506-4511.
9. Cui, L., Escalante, A. A., Imwong, M. and Snounou, G. (2003a). The genetic diversity of Plasmodium vivax populations. Trends in Parasitology 19, 220-226.
10. Cui, L., Mascorro, C. N., Fan, Q., Rzomp, K. A., Khuntirat, B., Zhou, G., Chen, H., Yan, G. and Sattabongkot, J. (2003b). Genetic diversity and multiple infections of Plasmodium vivax malaria in Western Thailand. American Journal of Tropical Medicine and Hygiene 68, 613-619.
11. Dayhoff, M. O. (1978). Protein segment dictionary 78. In Atlas of Protein Sequence and Structure, Vol. 5 pp. VII 470. National Biomedical Research Foundation, Silver Spring, Md, USA.
12. Egan, A. F., Burghaus, P., Druilhe, P., Holder, A. A. and Riley, E. M. (1999). Human antibodies to the 19 kDa C-terminal fragment of Plasmodium falciparum merozoite surface protein 1 inhibit parasite growth in vitro. Parasite Immunology 21, 133-139.
13. Escalante, A. A., Lal, A. A. and Ayala, F. J. (1998). Genetic polymorphism and natural selection in the malaria parasite Plasmodium falciparum. Genetics 149, 189-202.
14. Felger, I., Tavul, L., Kabintik, S., Marshall, V., Genton, B., Alpers, M. and Beck, H. P. (1994). Plasmodium falciparum: extensive polymorphism in merozoite surface antigen 2 alleles in an area with endemic malaria in Papua New Guinea. Experimental Parasitology 79, 106-116.
15. Figtree, M., Pasay, C. J., Slade, R., Cheng, Q., Cloonan, N., Walker, J. and Saul, A. (2000). Plasmodium vivax synonymous substitution frequencies, evolution and population structure deduced from diversity in AMA1 and MSP1 genes. Molecular and Biochemical Parasitology 108, 53-56.
16. Fitch, D. H., Mainone, C., Goodman, M. and Slightom, J. L. (1990). Molecular history of gene conversions in the primate fetal gamma-globin genes. Nucleotide sequences from the common gibbon, Hylobates lar. Journal of Biological Chemistry 265, 781-793.
17. Fitch, W. (1971). Toward defining the course of evolution: minimum change for a specified tree topology. Systematic Zoology 20, 406-416.
18. Fu, Y. X. and Li, W. H. (1993). Statistical tests of neutrality of mutations. Genetics 133, 693-709.
19. Gaur, D., Mayer, D. C. and Miller, L. H. (2004). Parasite ligand-host receptor interactions during invasion of erythrocytes by Plasmodium merozoites. International Journal for Parasitology 34, 1413-1429.
20. Good, M. F. (2001). Towards a blood-stage vaccine for malaria: are we following all the leads? Nature Reviews, Immunology 1, 117-125.
21. Guttman, D. S. and Dykhuizen, D. E. (1994). Clonal divergence in Escherichia coli as a result of recombination, not mutation. Science 266, 1380-1383.
22. Hillis, D. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42, 182-192.
23. Hudson, R. R. and Kaplan, N. L. (1985). Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
24. Hughes, A. L. and Verra, F. (2001). Very large long-term effective population size in the virulent human malaria parasite Plasmodium falciparum. Proceedings of the Royal Society, Biological Sciences 268, 1855-1860.
25. Hughes, M. K. and Hughes, A. L. (1995). Natural selection on Plasmodium surface proteins. Molecular and Biochemical Parasitology 71, 99-113.
26. INS (2003). Datos de Vigilancia Epidemiológica: boletines de Enfermedades transmitidas por vectores. Instituto Nacional de Salud Colombia.
27. Jongwutiwes, S., Putaporntip, C., Friedman, R. and Hughes, A. L. (2002). The extent of nucleotide polymorphism is highly variable across a 3-kb region on Plasmodium falciparum chromosome 2. Molecular Biology and Evolution 9, 1585-1590.
28. Kedzierski, L., Black, C. G. and Coppel, R. L. (2000). Immunization with recombinant Plasmodium yoelii merozoite surface protein 4/5 protects mice against lethal challenge. Infection and Immunity 68, 6034-6037.
29. Kedzierski, L., Black, C. G., Goschnick, M. W., Stowers, A. W. and Coppel, R. L. (2002). Immunization with a combination of merozoite surface proteins 4/5 and 1 enhances protection against lethal challenge with Plasmodium yoelii. Infection and Immunity 70, 6606-6613.
30. Kemp, D. J., Coppel, R. L. and Anders, R. F. (1987). Repetitive proteins and genes of malaria. Annual Review of Microbiology 41, 181-208.
31. Kumar, S., Tamura, K., Jakobsen, I. B. and Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
32. Marshall, V. M., Silva, A., Foley, M., Cranmer, S., Wang, L., Mccoll, D. J., Kemp, D. J. and Coppel, R. L. (1997). A second merozoite surface protein (MSP-4) of Plasmodium falciparum that contains an epidermal growth factor-like domain. Infection and Immunity 65, 4460-4467.
33. Marshall, V. M., Tieqiao, W. and Coppel, R. L. (1998). Close linkage of three merozoite surface protein genes on chromosome 2 of Plasmodium falciparum. Molecular and Biochemical Parasitology 94, 13-25.
34. Martinez, P., Suarez, C. F., Cardenas, P. P. and Patarroyo, M. A. (2004). Plasmodium vivax Duffy binding protein: a modular evolutionary proposal. Parasitology 128, 353-366.
35. Martinez, P., Suarez, C. F., Gomez, A., Cardenas, P. P., Guerrero, J. E. and Patarroyo, M. A. (2005). High level of conservation in Plasmodium vivax merozoite surface protein 4 (PvMSP4). Infection, Genetics and Evolution 5, 354-361.
36. Mascorro, C. N., Zhao, K., Khuntirat, B., Sattabongkot, J., Yan, G., Escalante, A. A. and Cui, L. (2005). Molecular evolution and intragenic recombination of the merozoite surface protein MSP-3alpha from the malaria parasite Plasmodium vivax in Thailand. Parasitology 131, 25-35.
37. McVean, G., Awadalla, P. and Fearnhead, P. (2002). A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160, 1231-1241.
38. Milne, I., Wright, F., Rowe, G., Marshall, D. F., Husmeier, D. and McGuire, G. (2004). TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments. Bioinformatics 20, 1806-1807.
39. Miller, L. H., Mason, S. J., Clyde, D. F. and McGinniss, M. H. (1976). The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. New England Journal of Medicine 295, 302-304.
40. Nei, M. and Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 3, 418-426.
41. Nicholas, K., Hb, N. and Deerfield, D. (1997). GeneDoc: analysis and visualization of genetic variation. EMBNEW.NEWS 4, 14.
42. Nielsen, R. (2005). Molecular signatures of natural selection. Annual Review of Genetics 39, 197-218.
43. O'Donnell, R. A., De Koning-Ward, T. F., Burt, R. A., Bockarie, M., Reeder, J. C., Cowman, A. F. and Crabb, B. S. (2001). Antibodies against merozoite surface protein (MSP)-1(19) are a major component of the invasion-inhibitory response in individuals immune to malaria. Journal of Experimental Medicine 193, 1403-1412.
44. Polson, H. E., Conway, D. J., Fandeur, T., Mercereau-Puijalon, O. and Longacre, S. (2005). Gene polymorphism of Plasmodium falciparum merozoite surface proteins 4 and 5. Molecular and Biochemical Parasitology 142, 110-115.
45. Polley, S., MacRobert, L. and Sutherland, C. (2004). Vaccination for vivax malaria: targeting the invaders. Trends in Parasitology 20, 99-102.
46. Putaporntip, C., Jongwutiwes, S., Sakihama, N., Ferreira, M. U., Kho, W. G., Kaneko, A., Kanbara, H., Hattori, T. and Tanabe, K. (2002). Mosaic organization and heterogeneity in frequency of allelic recombination of the Plasmodium vivax merozoite surface protein-1 locus. Proceedings of the National Academy of Sciences, USA 99, 16348-16353.
47. Putaporntip, C., Jongwutiwes, S., Tia, T., Ferreira, M. U., Kanbara, H. and Tanabe, K. (2001). Diversity in the thrombospondin-related adhesive protein gene (TRAP) of Plasmodium vivax. Gene 268, 97-104.
48. Rainczuk, A., Scorza, T., Spithill, T. W. and Smooker, P. M. (2004). A bicistronic DNA vaccine containing apical membrane antigen 1 and merozoite surface protein 4/5 can prime humoral and cellular immune responses and partially protect mice against virulent Plasmodium chabaudi adami DS malaria. Infection and Immunity 72, 5565-5573.
49. Rayner, J. C., Corredor, V., Feldman, D., Ingravallo, P., Iderabdullah, F., Galinski, M. R. and Barnwell, J. W. (2002). Extensive polymorphism in the Plasmodium vivax merozoite surface coat protein MSP-3alpha is limited to specific domains. Parasitology 125, 393-405.
50. Reed, M. B., Caruana, S. R., Batchelor, A. H., Thompson, J. K., Crabb, B. S. and Cowman, A. F. (2000). Targeted disruption of an erythrocyte binding antigen in Plasmodium falciparum is associated with a switch toward a sialic acid-independent pathway of invasion. Proceedings of the National Academy of Sciences, USA 97, 7509-7514.
51. Rozas, J., Sanchez-Delbarrio, J. C., Messeguer, X. and Rozas, R. (2003). DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496-2497.
52. Rzhetsky, A. and Nei, M. (1993). Theoretical foundation of the minimum-evolution method of phylogenetic inference. Molecular Biology and Evolution 10, 1073-1095.
53. Sim, B. K. (1995). EBA-175: an erythrocyte-binding ligand of Plasmodium falciparum. Parasitology Today 11, 213-217.
54. Singh, S. K., Hora, R., Belrhali, H., Chitnis, C. E. and Sharma, A. (2006). Structural basis for Duffy recognition by the malaria parasite Duffy-binding-like domain. Nature, London 439, 741-744.
55. Sitnikova, T. (1996). Bootstrap method of interior-branch test for phylogenetic trees. Mol Biol Evol 13, 605-611.
56. Snewin, V. A., Herrera, M., Sanchez, G., Scherf, A., Langsley, G. and Herrera, S. (1991). Polymorphism of the alleles of the merozoite surface antigens MSA1 and MSA2 in Plasmodium falciparum wild isolates from Colombia. Molecular and Biochemical Parasitology 49, 265-275.
57. Snow, R. W., Guerra, C. A., Noot, A. M., Myinme, H. Y. and Hay, S. I. (2005). The global distribution of clinical episodes of Plasmodium falciparum malaria. Nature, London 434, 214-217.
58. Stowers, A. W., Cioce, V., Shimp, R. L., Lawson, M., Hui, G., Muratova, O., Kaslow, D. C., Robinson, R., Long, C. A. and Miller, L. H. (2001). Efficacy of two alternate vaccines based on Plasmodium falciparum merozoite surface protein 1 in an Aotus challenge trial. Infection and Immunity 69, 1536-1546.
59. Tajima, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
60. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. and Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876-4882.
61. Volkman, S. K., Barry, A. E., Lyons, E. J., Nielsen, K. M., Thomas, S. M., Choi, M., Thakore, S. S., Day, K. P., Wirth, D. F. and Hartl, D. L. (2001). Recent origin of Plasmodium falciparum from a single progenitor. Science 293, 482-484.
62. Wang, L., Black, C. G., Marshall, V. M. and Coppel, R. L. (1999). Structural and antigenic properties of merozoite surface protein 4 of Plasmodium falciparum. Infection and Immunity 67, 2193-2200.
63. Wang, L., Goschnick, M. W. and Coppel, R. L. (2004). Oral immunization with a combination of Plasmodium yoelii merozoite surface proteins 1 and 4/5 enhances protection against lethal malaria challenge. Infection and Immunity 72, 6172-6175.
64. World Health Organization (2002). Epidemiological Bulletin. World Health Organization, Geneva.
65. Wu, T., Black, C. G., Wang, L., Hibbs, A. R. and Coppel, R. (1999). Lack of sequence diversity in the gene encoding merozoite surface protein 5 of Plasmodium falciparum. Molecular and Biochemical Parasitology 103, 243-250.