메뉴 건너뛰기




Volumn 13, Issue 4, 1996, Pages 605-611

Bootstrap method of interior-branch test for phylogenetic trees

Author keywords

bootstrap; interior branch test; neighbor joining; phylogenetic trees

Indexed keywords

ARTICLE; COMPUTER SIMULATION; GENE SEQUENCE; NUCLEOTIDE SEQUENCE; PHYLOGENY; STATISTICAL ANALYSIS;

EID: 0029965168     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025620     Document Type: Article
Times cited : (57)

References (30)
  • 1
    • 0026005922 scopus 로고
    • Use of the method of generalized least squares in reconstructing phylogenies from sequence data
    • BULMER, M. 1991. Use of the method of generalized least squares in reconstructing phylogenies from sequence data. Mol. Biol. Evol. 8:868-883.
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 868-883
    • Bulmer, M.1
  • 2
    • 0028258693 scopus 로고
    • Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach
    • DOPAZO, J. 1994. Estimating errors and confidence intervals for branch lengths in phylogenetic trees by a bootstrap approach. J. Mol. Evol. 38:300-304.
    • (1994) J. Mol. Evol. , vol.38 , pp. 300-304
    • Dopazo, J.1
  • 3
    • 0002344794 scopus 로고
    • Bootstrap methods: Another look at the jackknife
    • EFRON, B. 1979. Bootstrap methods: another look at the jackknife. Ann. Statist. 7:1-26.
    • (1979) Ann. Statist. , vol.7 , pp. 1-26
    • Efron, B.1
  • 5
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 6
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • FELSENSTEIN, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-565.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 7
    • 0021003230 scopus 로고
    • Estimates of DNA and protein sequence divergence: An examination of some assumptions
    • GOLDING, G. B. 1983. Estimates of DNA and protein sequence divergence: an examination of some assumptions. Mol. Biol. Evol. 1:125-142.
    • (1983) Mol. Biol. Evol. , vol.1 , pp. 125-142
    • Golding, G.B.1
  • 8
    • 12044253190 scopus 로고
    • An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analysis
    • HILLIS, D. M., and J. J. BULL. 1993. An empirical test of boot-strapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 9
    • 0025061094 scopus 로고
    • Limitations of the evolutionary parsimony method of phylogenetic analysis
    • JIN, L., and M. NEI. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:82-102.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 82-102
    • Jin, L.1    Nei, M.2
  • 10
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • H. M. MUNRO, ed. Academic Press, New York
    • JUKES, T. H., and C. R. CANTOR. 1969. Evolution of protein molecules. Pp. 21-132 in H. M. MUNRO, ed. Mammalian protein metabolism. Academic Press, New York.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 11
    • 0019296687 scopus 로고
    • Simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. Simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 12
    • 0015488244 scopus 로고
    • On the stochastic model for estimation of mutational distance between homologous proteins
    • KIMURA, M., and T. OHTA. 1972. On the stochastic model for estimation of mutational distance between homologous proteins. J. Mol. Evol. 2:87-90.
    • (1972) J. Mol. Evol. , vol.2 , pp. 87-90
    • Kimura, M.1    Ohta, T.2
  • 13
    • 0002538268 scopus 로고
    • Sequence evolution of mitochondrial DNA in humans and chimpanzees: Control region and a protein-coding region
    • T. OSAWA and T. HONJO, eds. Springer, Tokyo
    • KOCHER, T. D., and A. C. WILSON. 1991. Sequence evolution of mitochondrial DNA in humans and chimpanzees: control region and a protein-coding region. Pp. 41-64 in T. OSAWA and T. HONJO, eds. Evolution of life: fossils, molecules and culture. Springer, Tokyo.
    • (1991) Evolution of Life: Fossils, Molecules and Culture , pp. 41-64
    • Kocher, T.D.1    Wilson, A.C.2
  • 14
    • 0024690185 scopus 로고
    • A statistical test of phytogenies estimated from sequence data
    • LI, W.-H. 1989. A statistical test of phytogenies estimated from sequence data. Mol. Biol. Evol. 6:424-435.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 424-435
    • Li, W.-H.1
  • 16
    • 0001884732 scopus 로고
    • Relative efficiencies of different tree-making methods for molecular data
    • M. MIYAMOTO and J. CRACRAFT, eds. Oxford University Press, New York
    • NEI, M. 1991. Relative efficiencies of different tree-making methods for molecular data. Pp. 90-128 in M. MIYAMOTO and J. CRACRAFT, eds. Phylogenetic analysis of DNA sequences. Oxford University Press, New York.
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 90-128
    • Nei, M.1
  • 17
    • 0021927430 scopus 로고
    • Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes
    • NEI, M., J. C. STEPHENS, and N. SATTOU. 1985. Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes. Mol. Biol. Evol. 2:66-85.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 66-85
    • Nei, M.1    Stephens, J.C.2    Sattou, N.3
  • 18
    • 0010021633 scopus 로고
    • A note on the jackknife, the bootstrap and the delta method estimators of bias and variance
    • PARR, W. C. 1983. A note on the jackknife, the bootstrap and the delta method estimators of bias and variance. Biometrika 70:719-722.
    • (1983) Biometrika , vol.70 , pp. 719-722
    • Parr, W.C.1
  • 19
    • 0028913171 scopus 로고
    • Evolutionary analysis of picornavirus family
    • RODRIGO, M. J., and J. DOPAZO. 1995. Evolutionary analysis of picornavirus family. J. Mol. Evol. 40:362-371.
    • (1995) J. Mol. Evol. , vol.40 , pp. 362-371
    • Rodrigo, M.J.1    Dopazo, J.2
  • 20
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • RZHETSKY, A., and M. NEI. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9:945-967.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 21
    • 0027185401 scopus 로고
    • Theoretical foundation of the minimum-evolution method of phylogenetic inference
    • RZHETSKY, A., and M. NEI. 1993. Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol. Biol. Evol. 10:1073-1095.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1073-1095
    • Rzhetsky, A.1    Nei, M.2
  • 22
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 23
    • 0009984593 scopus 로고
    • A concept of type-2 p-value
    • SINGH, K., and R. H. BERK. 1994. A concept of type-2 p-value. Statistica Sinica 4:493-504.
    • (1994) Statistica Sinica , vol.4 , pp. 493-504
    • Singh, K.1    Berk, R.H.2
  • 24
    • 0028985519 scopus 로고
    • Interior-branch and bootstrap tests of phylogenetic trees
    • SITNIKOVA, T., A. RZHETSKY, and M. NEI. 1995. Interior-branch and bootstrap tests of phylogenetic trees. Mol. Biol. Evol. 12:319-333.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 319-333
    • Sitnikova, T.1    Rzhetsky, A.2    Nei, M.3
  • 25
    • 0026543389 scopus 로고
    • Statistical method for estimating the standard errors of branch lengths in a phylogenetic tree reconstructed without assuming equal rates of nucleotide substitution among different lineages
    • TAJIMA, F. 1992. Statistical method for estimating the standard errors of branch lengths in a phylogenetic tree reconstructed without assuming equal rates of nucleotide substitution among different lineages. Mol. Biol. Evol. 9:168-181.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 168-181
    • Tajima, F.1
  • 27
    • 0028267146 scopus 로고
    • Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
    • YANG, Z., N. GOLDMAN, and A. E. FRIDAY. 1994. Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation. Mol. Biol. Evol. 11: 316-324.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 316-324
    • Yang, Z.1    Goldman, N.2    Friday, A.E.3
  • 28
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: I. Four taxa with a molecular clock
    • ZHARKIKH, A., and W.-H. LI. 1992a. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: I. Four taxa with a molecular clock. Mol. Biol. Evol. 9:1119-1147.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.-H.2
  • 29
    • 0026484750 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock
    • ZHARKIKH, A., and W.-H. LI. 1992b. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences: II. Four taxa without a molecular clock. J. Mol. Evol. 35:356-366.
    • (1992) J. Mol. Evol. , vol.35 , pp. 356-366
    • Zharkikh, A.1    Li, W.-H.2
  • 30
    • 0029261787 scopus 로고
    • Estimation of confidence in phylogeny: The complete-and-partial bootstrap technique
    • ZHARKIKH, A., and W.-H. LI. 1995. Estimation of confidence in phylogeny: the complete-and-partial bootstrap technique. Mol. Phylogenet. Evol. 4:44-63.
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 44-63
    • Zharkikh, A.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.