Plasmodium vivax Duffy binding protein: A modular evolutionary proposal

Parasitology

Volumn 128, Issue 4, 2004, Pages 353-366

  Martinez, P ^a,b   Suarez, C F ^a   Cardenas, P P ^a,b   Patarroyo, M A ^a,b  

^a FUNDACIÓN INSTITUTO DE INMUNOLOGÍA DE COLOMBIA FIDIC   (Colombia)

^b UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

Author keywords

Colombian isolates; Cysteine rich motifs; Duffy binding protein; Genetic diversity; Geographical variation; Plasmodium vivax

Indexed keywords

BINDING PROTEIN; DUFFY BINDING PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; BLOOD SAMPLING; EVOLUTION; GENE; GENE SEQUENCE; GENETIC ORGANIZATION; GENETIC POLYMORPHISM; GENETIC VARIABILITY; HUMAN; MODULATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMODIUM VIVAX; PRIORITY JOURNAL; THEORY;

AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, PROTOZOAN; BASE SEQUENCE; CLUSTER ANALYSIS; DNA, PROTOZOAN; HUMANS; MALARIA, VIVAX; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLASMODIUM VIVAX; POLYMERASE CHAIN REACTION; PROTOZOAN PROTEINS; RECEPTORS, CELL SURFACE; SELECTION (GENETICS); SEQUENCE ALIGNMENT; SURFACE PROPERTIES; VARIATION (GENETICS);

PLASMODIUM VIVAX; PROTOZOA;

EID: 2442620378     PISSN: 00311820     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0031182003004773     Document Type: Article

References (51)

1. ADAMS, J. H., BLAIR, P. L., KANEKO, O. & PETERSON, D. S. (2001). An expanding ebl family of Plasmodium falciparum. Trends in Parasitology 17, 297-299.
2. ADAMS, J. H., SIM, B. K., DOLAN, S. A., FANG, X., KASLOW, D. C. & MILLER, L. H. (1992). A family of erythrocyte binding proteins of malaria parasites. Proceedings of the National Academy of Sciences, USA 89, 7085-7089.
3. AMPUDIA, E., PATARROYO, M. A., PATARROYO, M. E. & MURILLO, L. A. (1996). Genetic polymorphism of the Duffy receptor binding domain of Plasmodium vivax in Colombian wild isolates. Molecular and Biochemical Parasitology 78, 269-272.
4. BARNWELL, J. W. & GALINSKI, M. R. (1995). Plasmodium vivax: a glimpse into the unique and shared biology of the merozoite. Annals of Tropical Medicine and Parasitology 89, 113-120.
5. BARNWELL, J. W., NICHOLS, M. E. & RUBINSTEIN, P. (1989). In vitro evaluation of the role of the Duffy blood group in erythrocyte invasion by Plasmodium vivax. Journal of Experimental Medicine 169, 1795-1802.
6. CHITNIS, C. E. (2001). Molecular insights into receptors used by malaria parasites for erythrocyte invasion. Current Opinion in Hematology 8, 85-91.
7. CHITNIS, C. E. & MILLER, L. H. (1994). Identification of the erythrocyte binding domains of Plasmodium vivax and Plasmodium knowlesi proteins involved in erythrocyte invasion. Journal of Experimental Medicine 180, 497-506.
8. COLE-TOBIAN, J. & KING, C. L. (2003). Diversity and natural selection in Plasmodium vivax Duffy binding protein gene. Molecular and Biochemical Parasitology 127, 121-132.
9. COLE-TOBIAN, J. L., CORTES, A., BAISOR, M., KASTENS, W., XAINLI, J., BOCKARIE, M., ADAMS, J. H. & KING, C. L. (2002). Age-acquired immunity to a Plasmodium vivax invasion ligand, the duffy binding protein. Journal of Infectious Diseases 186, 531-539.
10. COLLINS, D. W. & JUKES, T. H. (1994). Rates of transition and transversion in coding sequences since the human-rodent divergence. Genomics 20, 386-396.
11. CUI, L., ESCALANTE, A. A., IMWONG, M. & SNOUNOU, G. (2003). The genetic diversity of Plasmodium vivax populations. Trends in Parasitology 19, 220-226.
12. DAYHOFF, M. O., SCHWARTZ, R. M. & ORCUTT, B. C. (1978). A model of evolutionary change in proteins. In Atlas of Protein Sequence and Structure (ed. Dayhoff, M. O.). National Biomedical Research Foundation. 5 (Suppl. 3e), 345-352.
13. ESCALANTE, A. A., GREBERT, H. M., ISEA, R., GOLDMAN, I. F., BASCO, L., MAGRIS, M., BISWAS, S., KARIUKI, S. & LAL, A. A. (2002). A study of genetic diversity in the gene encoding the circumsporozoite protein (CSP) of Plasmodium falciparum from different transmission areas-XVI. Asembo Bay Cohort Project. Molecular and Biochemical Parasitology 125, 83-90.
14. ESCALANTE, A. A., LAL, A. A. & AYALA, F. J. (1998). Genetic polymorphism and natural selection in the malaria parasite Plasmodium falciparum. Genetics 149, 189-202.
15. FANG, X. D., KASLOW, D. C., ADAMS, J. H. & MILLER, L. H. (1991). Cloning of the Plasmodium vivax Duffy receptor. Molecular and Biochemical Parasitology 44, 125-132.
16. FIGTREE, M., PASAY, C. J., SLADE, R., CHENG, Q., CLOONAN, N., WALKER, J. & SAUL, A. (2000). Plasmodium vivax synonymous substitution frequencies, evolution and population structure deduced from diversity in AMA 1 and MSP 1 genes. Molecular and Biochemical Parasitology 108, 53-66.
17. FITCH, W. (1971). Toward defining the course of evolution: minimum change for a specified tree topology. Systematic Zoology 20, 406-416.
18. FRASER, T., MICHON, P., BARNWELL, J. W., NOE, A. R., AL-YAMAN, F., KASLOW, D. C. & ADAMS, J. H. (1997). Expression and serologic activity of a soluble recombinant Plasmodium vivax Duffy binding protein. Infection and Immunity 65, 2772-2777.
19. FU, Y. X. & LI, W. H. (1993). Statistical tests of neutrality of mutations. Genetics 133, 693-709.
20. HILLIS, D. M. (1993). An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42, 182-192.
21. HUDSON, R. R. & KAPLAN, N. L. (1985). Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
22. KHO, W. G., CHUNG, J. Y., SIM, E. J., KIM, D. W. & CHUNG, W. C. (2001). Analysis of polymorphic regions of Plasmodium vivax Duffy binding protein of Korean isolates. The Korean Journal of Parasitology 39, 143-150.
23. KIM, T., KIM, Y. J., SONG, K. J., SONG, J. W., CHA, S. H., KIM, Y. K., SHIN, Y. K., SUH, I. B. & LIM, C. S. (2002). The molecular characteristics of circumsporozoite protein gene subtypes from Plasmodium vivax isolates in Republic of Korea. Parasitology Research 88, 1051-1054.
24. KUMAR, S., TAMURA, K., JAKOBSEN, I. B. & NEI, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
25. KYTE, J. & DOOLITTLE, R. F. (1982). A simple method for displaying the hydropathic character of a protein. Journal of Molecular Biology 157, 105-132.
26. LOMBARD, V., CAMON, E. B., PARKINSON, H. E., HINGAMP, P., STOESSER, G. & REDASCHI, N. (2002). EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database. Bioinformatics 18, 763-764.
27. MANN, V. H., HUANG, T., CHENG, Q. & SAUL, A. (1994). Sequence variation in the circumsporozoite protein gene of Plasmodium vivax appears to be regionally biased. Molecular and Biochemical Parasitology 68, 45-52.
28. MICHON, P., FRASER, T. & ADAMS, J. H. (2000). Naturally acquired and vaccine-elicited antibodies block erythrocyte cytoadherence of the Plasmodium vivax Duffy binding protein. Infection and Immunity 68, 3164-3171.
29. MICHON, P., STEVENS, J. R., KANEKO, O. & ADAMS, J. H. (2002). Evolutionary relationships of conserved cysteine-rich motifs in adhesive molecules of malaria parasites. Molecular Biology and Evolution 19, 1128-1142.
30. MILLER, L. H., MASON, S. J., CLYDE, D. F. & McGINNISS, M. H. (1976). The resistance factor to Plasmodium vivax in blacks. The Duffy-blood-group genotype, FyFy. New England Journal of Medicine 295, 302-304.
31. NEI, M. & GOJOBORI, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 3, 418-426.
32. NICHOLAS, K., NICHOLAS, H. B. Jr. & DEERFIELD, D. W. II (1997). GeneDoc: Analysis and Visualization of Genetic Variation. EMBNEW NEWS 4, 14.
33. OCAMPO, M., VERA, R., EDUARDO RODRIGUEZ, L., CURTIDOR, H., URQUIZA, M., SUAREZ, J., GARCIA, J., PUENTES, A., LOPEZ, R., TRUJILLO, M., TORRES, E. & ELKIN PATARROYO, M. (2002). Plasmodium vivax Duffy binding protein peptides specifically bind to reticulocytes. Peptides 23, 13-22.
34. PUTAPORNTIP, C., JONGWUTIWES, S., SAKIHAMA, N., FERREIRA, M. U., KHO, W. G., KANEKO, A., KANBARA, H., HATTORI, T. & TANABE, K. (2002). Mosaic organization and heterogeneity in frequency of allelic recombination of the Plasmodium vivax merozoite surface protein-1 locus. Proceedings of the National Academy of Sciences, USA 99, 16348-16353.
35. PUTAPORNTIP, C., JONGWUTIWES, S., TIA, T., FERREIRA, M. U., KANBARA, H. & TANABE, K. (2001). Diversity in the thrombospondin-related adhesive protein gene (TRAP) of Plasmodium vivax. Gene 268, 97-104.
36. QARI, S. H., GOLDMAN, I. F., POVOA, M. M., DI SANTI, S., ALPERS, M. P. & LAL, A. A. (1992). Polymorphism in the circumsporozoite protein of the human malaria parasite Plasmodium vivax. Molecular and Biochemical Parasitology 55, 105-113.
37. RANJAN, A. & CHITNIS, C. E. (1999). Mapping regions containing binding residues within functional domains of Plasmodium vivax and Plasmodium knowlesi erythrocyte-binding proteins. Proceedings of the National Academy of Sciences, USA 96, 14067-14072.
38. RAYNER, J. C., CORREDOR, V., FELDMAN, D., INGRAVALLO, P., IDERABDULLAH, F., GALINSKI, M. R. & BARNWELL, J. W. (2002). Extensive polymorphism in the Plasmodium vivax merozoite surface coat protein MSP-3alpha is limited to specific domains. Parasitology 125, 393-405.
39. REED, M. B., CARUANA, S. R., BATCHELOR, A. H., THOMPSON, J. K., CRABB, B. S. & COWMAN, A. F. (2000). Targeted disruption of an erythrocyte binding antigen in Plasmodium falciparum is associated with a switch toward a sialic acid-independent pathway of invasion. Proceedings of the National Academy of Sciences, USA 97, 7509-7514.
40. ROZAS, J. & ROZAS, R. (1999). DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15, 174-175.
41. RZHETSKY, A. & NEI, M. (1993). Theoretical foundation of the minimum-evolution method of phylogenetic inference. Molecular Biology and Evolution 10, 1073-1095.
42. SINGH, S. K., SINGH, A. P., PANDEY, S., YAZDANI, S. S., CHITNIS, C. E. & SHARMA, A. (2003). Definition of structural elements in Plasmodium vivax and Plasmodium knowlesi Duffy binding domains necessary for erythrocyte invasion. The Biochemical Journal 374, 193-198.
43. SUH, I. B., HOFFMAN, K. J., KIM, S. H., SONG, K. J., SONG, J. W., LEE, J. S. & LIM, C. S. (2001). The analysis of Plasmodium vivax Duffy receptor binding domain gene sequence from resurgent Korean isolates. Parasitology Research 87, 1007-1010.
44. SUZUKI, Y. & GOJOBORI, T. (1999). A method for detecting positive selection at single amino acid sites. Molecular Biology and Evolution 16, 1315-1328.
45. TAJIMA, F. (1989). Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123, 585-595.
46. TAMURA, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Molecular Biology and Evolution 9, 678-687.
47. THOMPSON, J. D., GIBSON, T. J., PLEWNIAK, F., JEANMOUGIN, F. & HIGGINS, D. C. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25, 4876-4882.
48. TSUBOI, T., KAPPE, S. H., AL-YAMAN, F., PRICKETT, M. D., ALPERS, M. & ADAMS, J. H. (1994). Natural variation within the principal adhesion domain of the Plasmodium vivax duffy binding protein. Infection and Immunity 62, 5581-5586.
49. VERRA, F. & HUGHES, A. L. (2000). Evidence for ancient balanced polymorphism at the Apical Membrane Antigen-1 (AMA-1) locus of Plasmodium falciparum. Molecular and Biochemical Parasitology 105, 149-153.
50. WERTHEIMER, S. P. & BARNWELL, J. W. (1989). Plasmodium vivax interaction with the human Duffy blood group glycoprotein: identification of a parasite receptor-like protein. Experimental Parasitology 69, 340-350.
51. XAINLI, J., ADAMS, J. H. & KING, C. L. (2000). The erythrocyte binding motif of Plasmodium vivax duffy binding protein is highly polymorphic and functionally conserved in isolates from Papua New Guinea. Molecular and Biochemical Parasitology 111, 253-260.