-
1
-
-
0141994858
-
Genomic microarrays in human genetic disease and cancer
-
Albertson DG, Pinkel D. 2003. Genomic microarrays in human genetic disease and cancer. Hum Mol Genet 12:R145-R152.
-
(2003)
Hum Mol Genet
, vol.12
-
-
Albertson, D.G.1
Pinkel, D.2
-
2
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc 57:289-300.
-
(1995)
J R Stat Soc
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
3
-
-
0021261878
-
Amplification of N-myc in untreated human neuroblastomas correlates with advanced disease stage
-
Brodeur GM, Seeger RC, Schwab M, Varmus HE, Bishop JM. 1984. Amplification of N-myc in untreated human neuroblastomas correlates with advanced disease stage. Science 224:1121-1124.
-
(1984)
Science
, vol.224
, pp. 1121-1124
-
-
Brodeur, G.M.1
Seeger, R.C.2
Schwab, M.3
Varmus, H.E.4
Bishop, J.M.5
-
4
-
-
0035895502
-
The human transcriptome map: Clustering of highly expressed genes in chromosomal domains
-
Caron H, Schaik BV, Mee MV, Baas F, Riggins G, Sluis PV, Hermus MC, Asperen RV, Boon K, Vote PA, Heisterkamp S, van Kampen A, Versteeg R. 2001. The human transcriptome map: Clustering of highly expressed genes in chromosomal domains. Science 291: 1289-1292.
-
(2001)
Science
, vol.291
, pp. 1289-1292
-
-
Caron, H.1
Schaik, B.V.2
Mee, M.V.3
Baas, F.4
Riggins, G.5
Sluis, P.V.6
Hermus, M.C.7
Asperen, R.V.8
Boon, K.9
Vote, P.A.10
Heisterkamp, S.11
Van Kampen, A.12
Versteeg, R.13
-
5
-
-
0038581906
-
Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data
-
Crawley JJ, Purge KA. 2002. Identification of frequent cytogenetic aberrations in hepatocellular carcinoma using gene-expression microarray data. Genome Biol 3:0075.1-0075.8.
-
(2002)
Genome Biol
, vol.3
-
-
Crawley, J.J.1
Purge, K.A.2
-
6
-
-
85078507894
-
Multistep carcinogenesis: A chain reaction of aneuploidizations
-
Duesberg P, Li R. 2003. Multistep carcinogenesis: A chain reaction of aneuploidizations. Cell Cycle 2:202-210.
-
(2003)
Cell Cycle
, vol.2
, pp. 202-210
-
-
Duesberg, P.1
Li, R.2
-
7
-
-
3042820902
-
Microarray and serial analysis of gene expression analyses identify known and novel transcripts overexpressed in hematopoietic stem cells
-
Georgantas RW III, Tanadve V, Malehorn M, Heimfeld S, Chen C, Carr L, Martinez-Murillo F, Riggins G, Kowalski J, Civin CI. 2004. Microarray and serial analysis of gene expression analyses identify known and novel transcripts overexpressed in hematopoietic stem cells. Cancer Res 64:4434-4441.
-
(2004)
Cancer Res
, vol.64
, pp. 4434-4441
-
-
Georgantas III, R.W.1
Tanadve, V.2
Malehorn, M.3
Heimfeld, S.4
Chen, C.5
Carr, L.6
Martinez-Murillo, F.7
Riggins, G.8
Kowalski, J.9
Civin, C.I.10
-
8
-
-
19944428231
-
Design principle of gene expression used by human stem cells: Implication for pluripotency
-
Golan-Mashiach M, Dazard JE, Gerecht-Nir S, Amariglio N, Fisher T, Jacob-Hirsch J, Bielorai B, Osenberg S, Barad O, Getz G, Toren A, Rechavi G, Itskovitz-Eldor J, Domany E, Givol D. 2005. Design principle of gene expression used by human stem cells: Implication for pluripotency. FASEB J 19:147-149.
-
(2005)
FASEB J
, vol.19
, pp. 147-149
-
-
Golan-Mashiach, M.1
Dazard, J.E.2
Gerecht-Nir, S.3
Amariglio, N.4
Fisher, T.5
Jacob-Hirsch, J.6
Bielorai, B.7
Osenberg, S.8
Barad, O.9
Getz, G.10
Toren, A.11
Rechavi, G.12
Itskovitz-Eldor, J.13
Domany, E.14
Givol, D.15
-
9
-
-
10644258336
-
Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B
-
Hanks S, Coleman K, Reid S, Plaja A, Firth H, Fitzpatrick D, Kidd A, Mehes K, Nash R, Robin N, Shannon N, Tolmie J, Swansbury J, Itrthum A, Douglas J, Rahman N. 2004. Constitutional aneuploidy and cancer predisposition caused by biallelic mutations in BUB1B. Nat Genet 36:1159-1161.
-
(2004)
Nat Genet
, vol.36
, pp. 1159-1161
-
-
Hanks, S.1
Coleman, K.2
Reid, S.3
Plaja, A.4
Firth, H.5
Fitzpatrick, D.6
Kidd, A.7
Mehes, K.8
Nash, R.9
Robin, N.10
Shannon, N.11
Tolmie, J.12
Swansbury, J.13
Itrthum, A.14
Douglas, J.15
Rahman, N.16
-
10
-
-
17444441536
-
Prognostic impact of trisomies of chromosomes 10, 17, and 5 among children with acute lymphoblastic leukemia and high hyperdiploidy (>50 chromosomes)
-
Heerema NA, Sather HN, Sensel MG, Zhang T, Hutchinson RJ, Nachman JB, Lange BJ, Steinherz PG, Bostrom BC, Reaman GH, Gaynon PS, Uckun FM. 2000. Prognostic impact of trisomies of chromosomes 10, 17, and 5 among children with acute lymphoblastic leukemia and high hyperdiploidy (>50 chromosomes). J Clin Oncol 18:1876-1887.
-
(2000)
J Clin Oncol
, vol.18
, pp. 1876-1887
-
-
Heerema, N.A.1
Sather, H.N.2
Sensel, M.G.3
Zhang, T.4
Hutchinson, R.J.5
Nachman, J.B.6
Lange, B.J.7
Steinherz, P.G.8
Bostrom, B.C.9
Reaman, G.H.10
Gaynon, P.S.11
Uckun, F.M.12
-
11
-
-
4043093341
-
Rb inactivation promotes genomic instability by uncoupling cell cycle progression from mitotic control
-
Hernando E, Nahle Z, Juan G, Diaz-Rodriguez E, Alaminos M, Hemann M, Michel L, Mittal V, Gerald W, Benezra R, Lowe SW, Cordon-Cardo C. 2004. Rb inactivation promotes genomic instability by uncoupling cell cycle progression from mitotic control. Nature 430:797-802.
-
(2004)
Nature
, vol.430
, pp. 797-802
-
-
Hernando, E.1
Nahle, Z.2
Juan, G.3
Diaz-Rodriguez, E.4
Alaminos, M.5
Hemann, M.6
Michel, L.7
Mittal, V.8
Gerald, W.9
Benezra, R.10
Lowe, S.W.11
Cordon-Cardo, C.12
-
12
-
-
17444446946
-
Widespread aneuploidy revealed by DNA microarray expression profiling
-
Hughes TR, Roberts CJ, Dai H, Jones AR, Meyer MR, Slade D, Burchard J, Dow S, Ward TR, Kidd MJ, Friend SH, Marton MJ. 2000. Widespread aneuploidy revealed by DNA microarray expression profiling. Nat Genet 25:333-337.
-
(2000)
Nat Genet
, vol.25
, pp. 333-337
-
-
Hughes, T.R.1
Roberts, C.J.2
Dai, H.3
Jones, A.R.4
Meyer, M.R.5
Slade, D.6
Burchard, J.7
Dow, S.8
Ward, T.R.9
Kidd, M.J.10
Friend, S.H.11
Marton, M.J.12
-
13
-
-
16544374118
-
Overexpression of E2F-1 in lung and liver metastases of human colon cancer is associated with gene amplification
-
Iwamoto M, Banerjee D, Menon LG, Jurkiewicz A, Rao PH, Kemeny NE, Fong Y, Jhanwar SC, Gorlick R, Bertino JR. 2004. Overexpression of E2F-1 in lung and liver metastases of human colon cancer is associated with gene amplification. Cancer Biol Ther 3:395-399.
-
(2004)
Cancer Biol Ther
, vol.3
, pp. 395-399
-
-
Iwamoto, M.1
Banerjee, D.2
Menon, L.G.3
Jurkiewicz, A.4
Rao, P.H.5
Kemeny, N.E.6
Fong, Y.7
Jhanwar, S.C.8
Gorlick, R.9
Bertino, J.R.10
-
14
-
-
33645240282
-
Perspective: Chromosomal aneuploidy in leukemialessons from Down syndrome
-
Izraeli S 2005. Perspective: Chromosomal aneuploidy in leukemialessons from Down syndrome. Hematol Oncol 24:3-6.
-
(2005)
Hematol Oncol
, vol.24
, pp. 3-6
-
-
Izraeli, S.1
-
15
-
-
0141923915
-
Outcome heterogeneity in childhood high-hyperdiploid acute lymphoblastic leukemia
-
Moorman AV, Richards SM, Martineau M, Cheung KL, Robinson HM, Jalali GR, Broadfield ZJ, Harris RL, Taylor KE, Gibson BE, Hann IM, Hill FG, Kinsey SE, Eden TO, Mitchell CD, Harrison CJ. 2003. Outcome heterogeneity in childhood high-hyperdiploid acute lymphoblastic leukemia. Blood 102:2756-2762.
-
(2003)
Blood
, vol.102
, pp. 2756-2762
-
-
Moorman, A.V.1
Richards, S.M.2
Martineau, M.3
Cheung, K.L.4
Robinson, H.M.5
Jalali, G.R.6
Broadfield, Z.J.7
Harris, R.L.8
Taylor, K.E.9
Gibson, B.E.10
Hann, I.M.11
Hill, F.G.12
Kinsey, S.E.13
Eden, T.O.14
Mitchell, C.D.15
Harrison, C.J.16
-
16
-
-
20144389740
-
Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma
-
Nigro JM, Misra A, Zhang L, Smirnov I, Colman H, Griffin C, Ozburn N, Chen M, Pan E, Koul D, Yung WK, Feuerstein BG, Aldape KD. 2005. Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. Cancer Res 65: 1678-1686.
-
(2005)
Cancer Res
, vol.65
, pp. 1678-1686
-
-
Nigro, J.M.1
Misra, A.2
Zhang, L.3
Smirnov, I.4
Colman, H.5
Griffin, C.6
Ozburn, N.7
Chen, M.8
Pan, E.9
Koul, D.10
Yung, W.K.11
Feuerstein, B.G.12
Aldape, K.D.13
-
17
-
-
0037059043
-
The role of chromosomal instability in tumor initiation
-
Nowak MA, Komarova NL, Sengupta A, Jallepalli PV, Shih Ie M, Vogelstein B, Lengauer C. 2002. The role of chromosomal instability in tumor initiation. Proc Natl Acad Sci USA 99:16226-16231.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16226-16231
-
-
Nowak, M.A.1
Komarova, N.L.2
Sengupta, A.3
Jallepalli, P.V.4
Shih, Ie.M.5
Vogelstein, B.6
Lengauer, C.7
-
18
-
-
0035890378
-
The consequences of chromosomal aneuploidy on gene expression profiles in a cell line model for prostate carcinogenesis
-
Phillips JL, Hayward SW, Wang Y, Vasselli J, Pavlovich C, Padilla-Nash H, Pezullo JR, Ghadimi BM, Grossfeld GD, Rivera A, Linehan WM, Cunha GR, Ried T. 2001. The consequences of chromosomal aneuploidy on gene expression profiles in a cell line model for prostate carcinogenesis. Cancer Res 61:8143-8149.
-
(2001)
Cancer Res
, vol.61
, pp. 8143-8149
-
-
Phillips, J.L.1
Hayward, S.W.2
Wang, Y.3
Vasselli, J.4
Pavlovich, C.5
Padilla-Nash, H.6
Pezullo, J.R.7
Ghadimi, B.M.8
Grossfeld, G.D.9
Rivera, A.10
Linehan, W.M.11
Cunha, G.R.12
Ried, T.13
-
19
-
-
0036171569
-
Silence of chromosomal amplifications in colon cancer
-
Platzer P, Upender MB, Wilson K, Willis J, Lutterbaugh J, Nosrati A, Willson JK, Mack D, Ried T, Markowitz S. 2002. Silence of chromosomal amplifications in colon cancer. Cancer Res 62:1134-1138.
-
(2002)
Cancer Res
, vol.62
, pp. 1134-1138
-
-
Platzer, P.1
Upender, M.B.2
Wilson, K.3
Willis, J.4
Lutterbaugh, J.5
Nosrati, A.6
Willson, J.K.7
Mack, D.8
Ried, T.9
Markowitz, S.10
-
20
-
-
13844250828
-
Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
-
Pollack JR, Sorlie T, Perou CM, Rees CA, Jeffrey SS, Lonning PE, Tibshirani R, Botstein D, Borresen-Dale AL, Brown PO. 2002. Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors. Proc Natl Acad Sci USA 99:12963-12968.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 12963-12968
-
-
Pollack, J.R.1
Sorlie, T.2
Perou, C.M.3
Rees, C.A.4
Jeffrey, S.S.5
Lonning, P.E.6
Tibshirani, R.7
Botstein, D.8
Borresen-Dale, A.L.9
Brown, P.O.10
-
21
-
-
0035473994
-
Childhood acute lymphoblastic leukaemia - Current status and future perspectives
-
Pui CH, Campana D, Evans WE. 2001. Childhood acute lymphoblastic leukaemia-Current status and future perspectives. Lancet Oncol 2:597-607.
-
(2001)
Lancet Oncol
, vol.2
, pp. 597-607
-
-
Pui, C.H.1
Campana, D.2
Evans, W.E.3
-
22
-
-
0141993002
-
Classification of pediatric acute lymphoblastic leukemia by gene expression profiling
-
Ross ME, Zhou X, Song G, Shurtleff SA, Girtman K, Williams WK, Liu HC, Mahfouz R, Raimondi SC, Lenny N, Patel A, Downing JR. 2003. Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood 102:2951-2959.
-
(2003)
Blood
, vol.102
, pp. 2951-2959
-
-
Ross, M.E.1
Zhou, X.2
Song, G.3
Shurtleff, S.A.4
Girtman, K.5
Williams, W.K.6
Liu, H.C.7
Mahfouz, R.8
Raimondi, S.C.9
Lenny, N.10
Patel, A.11
Downing, J.R.12
-
23
-
-
21744435615
-
Genomic gains and losses influence expression levels of genes located within the affected regions: A study on acute myeloid leukemias with trisomy 8, 11, or 13, monosomy 7, or deletion 5q
-
Schoch C, Kohlmann A, Dugas M, Kern W, Hiddemann W, Schnittger S, Haferlach T. 2005. Genomic gains and losses influence expression levels of genes located within the affected regions: A study on acute myeloid leukemias with trisomy 8, 11, or 13, monosomy 7, or deletion 5q. Leukemia 19:1224-1228.
-
(2005)
Leukemia
, vol.19
, pp. 1224-1228
-
-
Schoch, C.1
Kohlmann, A.2
Dugas, M.3
Kern, W.4
Hiddemann, W.5
Schnittger, S.6
Haferlach, T.7
-
24
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
Su AI, Cooke MP, Ching KA, Hakak Y, Walker JR, Wiltshire T, Orth AP, Vega RG, Sapinoso LM, Moqrich A, Patapoutian A, Hampton GM, Schultz PG, Hogenesch JB. 2002. Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci USA 99: 4465-4470.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4465-4470
-
-
Su, A.I.1
Cooke, M.P.2
Ching, K.A.3
Hakak, Y.4
Walker, J.R.5
Wiltshire, T.6
Orth, A.P.7
Vega, R.G.8
Sapinoso, L.M.9
Moqrich, A.10
Patapoutian, A.11
Hampton, G.M.12
Schultz, P.G.13
Hogenesch, J.B.14
-
25
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. 2004. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc Natl Acad Sci USA 101:6062-6067.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
Wiltshire, T.2
Batalov, S.3
Lapp, H.4
Ching, K.A.5
Block, D.6
Zhang, J.7
Soden, R.8
Hayakawa, M.9
Kreiman, G.10
Cooke, M.P.11
Walker, J.R.12
Hogenesch, J.B.13
-
26
-
-
10944219726
-
Multiple numerical chromosome aberrations in cancer: What are their causes and what are their consequences?
-
Teixeira MR, Heim S. 2005. Multiple numerical chromosome aberrations in cancer: What are their causes and what are their consequences? Semin Cancer Biol 15:3-12.
-
(2005)
Semin Cancer Biol
, vol.15
, pp. 3-12
-
-
Teixeira, M.R.1
Heim, S.2
-
27
-
-
33644547983
-
Relationship of gene expression and chromosomal abnormalities in colorectal cancer
-
Tsafrir D, Bacolod M, Selvanayagam Z, Tsafrir I, Shia J, Zeng Z, Liu H, Krier C, Stengel RF, Barany F, Gerald VVL, Paty PB, Domany E, Notterman DA. 2006. Relationship of gene expression and chromosomal abnormalities in colorectal cancer. Cancer Res 66:2129-2137.
-
(2006)
Cancer Res
, vol.66
, pp. 2129-2137
-
-
Tsafrir, D.1
Bacolod, M.2
Selvanayagam, Z.3
Tsafrir, I.4
Shia, J.5
Zeng, Z.6
Liu, H.7
Krier, C.8
Stengel, R.F.9
Barany, F.10
Gerald, V.V.L.11
Paty, P.B.12
Domany, E.13
Notterman, D.A.14
-
28
-
-
0038701967
-
Tumor classification based on gene expression profiling shows that uveal melanomas with and without monosomy 3 represent two distinct entities
-
Tschentscher F, Husing J, Holter T, Kruse E, Dresen IG, Jockel KH, Anastassiou G, Schilling H, Bornfeld N, Horsthemke B, Lohmann DR, Zeschnigk M. 2003. Tumor classification based on gene expression profiling shows that uveal melanomas with and without monosomy 3 represent two distinct entities. Cancer Res 63:2578-2584.
-
(2003)
Cancer Res
, vol.63
, pp. 2578-2584
-
-
Tschentscher, F.1
Husing, J.2
Holter, T.3
Kruse, E.4
Dresen, I.G.5
Jockel, K.H.6
Anastassiou, G.7
Schilling, H.8
Bornfeld, N.9
Horsthemke, B.10
Lohmann, D.R.11
Zeschnigk, M.12
-
29
-
-
0035970039
-
Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics
-
Virtaneva K, Wright FA, Tanner SM, Yuan B, Lemon WJ, Caligiuri MA, Bloomfield CD, de La Chapelle A, Krahe R. 2001. Expression profiling reveals fundamental biological differences in acute myeloid leukemia with isolated trisomy 8 and normal cytogenetics. Proc Natl Acad Sci USA 98:1124-1129.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1124-1129
-
-
Virtaneva, K.1
Wright, F.A.2
Tanner, S.M.3
Yuan, B.4
Lemon, W.J.5
Caligiuri, M.A.6
Bloomfield, C.D.7
De La Chapelle, A.8
Krahe, R.9
-
30
-
-
4043181214
-
Cancer genes and the pathways they control
-
Vogelstein B, Kinzler KW. 2004. Cancer genes and the pathways they control. Nat Med 10:789-799.
-
(2004)
Nat Med
, vol.10
, pp. 789-799
-
-
Vogelstein, B.1
Kinzler, K.W.2
-
31
-
-
0037085936
-
Significance of MAD2 expression to mitotic checkpoint control in ovarian cancer cells
-
Wang X, Jin DY, Ng RW, Feng H, Wong WC, Cheung AL, Tsao SW. 2004. Significance of MAD2 expression to mitotic checkpoint control in ovarian cancer cells. Cancer Res 62:1662-1668.
-
(2004)
Cancer Res
, vol.62
, pp. 1662-1668
-
-
Wang, X.1
Jin, D.Y.2
Ng, R.W.3
Feng, H.4
Wong, W.C.5
Cheung, A.L.6
Tsao, S.W.7
-
32
-
-
13844255522
-
Coupled analysis of gene expression and chromosomal location
-
Yi Y, Mirosevich J, Shyr Y, Matusik R, George AL, Jr. 2005. Coupled analysis of gene expression and chromosomal location. Genomics 85:401-412.
-
(2005)
Genomics
, vol.85
, pp. 401-412
-
-
Yi, Y.1
Mirosevich, J.2
Shyr, Y.3
Matusik, R.4
George Jr., A.L.5
-
33
-
-
0035893556
-
Derivation of human tumor cells in vitro without widespread genomic instability
-
Zimonjic D, Brooks MW, Popescu N, Weinberg RA, Hahn WC. 2001. Derivation of human tumor cells in vitro without widespread genomic instability. Cancer Res 61:8838-8844.
-
(2001)
Cancer Res
, vol.61
, pp. 8838-8844
-
-
Zimonjic, D.1
Brooks, M.W.2
Popescu, N.3
Weinberg, R.A.4
Hahn, W.C.5
|