Chromatin assembly during DNA replication in somatic cells

European Journal of Biochemistry

Volumn 263, Issue 1, 1999, Pages 1-5

  Krude, Torsten ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Assembly; CAF 1; Chromatin; DNA replication; Histone; NAP 1; Nuclei; Nucleosome; PCNA; Phase

Indexed keywords

HISTONE;

CELL CYCLE; CHROMATIN STRUCTURE; DNA REPLICATION; DNA STRAND; DROSOPHILA; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; REVIEW;

EID: 0033167934     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1999.00508.x     Document Type: Review

References (47)

1. 1. Luger, K., Mader, A.W., Richmond, R.K., Sargent, D.F. & Richmond, T.J. (1997). Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 389, 251-260.
2. 2. Laskey, R.A., Mills, A.D., Philpott, A., Leno, G.H., Dilworth, S.M. & Dingwall, C. (1993). The role of nucleoplasmin in chromatin assembly and disassembly. Philos. Trans. R. Soc. Lond. B Biol. Sci. 339, 263-269.
3. 3. Kaufman, P.D. & Botchan, M.R. (1994). Assembly of nucleosomes: do multiple assembly factors mean multiple mechanisms? Curr. Opin. Genet. Dev 4, 229-235.
4. 4. Krude, T. (1995). Chromatin. Nucleosome assembly during DNA replication. Curr. Biol. 5, 1232-1234.
5. 5. Kaufman, P.D. (1996). Nucleosome assembly: the CAF and the HAT. Curr. Opin. Cell Biol. 8, 369-373.
6. 6. Sogo, J.M., Stahl, H., Koller, T. & Knippers, R. (1986). Structure of replicating simian virus 40 minichromosomes. The replication fork, core histone segregation and terminal structures. J. Mol. Biol. 189, 189-204.
7. 7. Gasser, R., Koller, T. & Sogo, J.M. (1996). The stability of nucleosomes at the replication fork. J. Mol. Biol. 258, 224-239.
8. 8. Bonne-Andrea, C., Wong, M.L. & Alberts, B.M. (1990). In vitro replication through nucleosomes without histone displacement. Nature 343, 719-726.
9. 9. Krude, T. & Knippers, R. (1991). Transfer of nucleosomes from parental to replicated chromatin. Mol. Cell Biol. 11, 6257-6267.
10. 10. Sugasawa, K., Ishimi, Y., Eki, T., Hurwitz, J., Kikuchi, A. & Hanaoka, F. (1992). Nonconservative segregation of parental nucleosomes during simian virus 40 chromosome replication in vitro. Proc. Natl Acad. Sci. USA 89, 1055-1059.
11. 11. Randall, S.K. & Kelly, T.J. (1992). The fate of parental nucleosomes during SV40 DNA replication. J. Biol. Chem. 267, 14259-14265.
12. 12. Gruss, C., Wu, J., Koller, T. & Sogo, J.M. (1993). Disruption of the nucleosomes at the replication fork. EMBO J. 12, 4533-4545.
13. 13. Jackson, V. (1990). In vivo studies on the dynamics of histone-DNA interaction: evidence for nucleosome dissolution during replication and transcription and a low level of dissolution independent of both. Biochemistry 29, 719-731.
14. 14. Quintini, G., Treuner, K., Gruss, C. & Knippers, R. (1996). Role of amino-terminal histone domains in chromatin replication. Mol. Cell Biol. 16, 2888-2897.
15. 15. Waga, S. & Stillman, B. (1998). The DNA replication fork in eukaryotic cells. Annu. Rev. Biochem. 67, 721-751.
16. 16. Verreault, A., Kaufman, P.D., Kobayashi, R. & Stillman, B. (1998). Nucleosomal DNA regulates the core-histone-binding subunit of the human Hatl acetyltransferase. Curr. Biol. 8, 96-108.
17. 17. Orphanides, G., LeRoy, G., Chang, C.H., Luse, D.S. & Reinberg, D. (1998). FACT, a factor that facilitates transcript elongation through nucleosomes. Cell 92, 105-116.
18. 18. LeRoy, G., Orphanides, G., Lane, W.S. & Reinberg, D. (1998). Requirement of RSF and FACT for transcription of chromatin templates in vitro. Science 282, 1900-1904.
19. 19. Smith, S. & Stillman, B. (1989). Purification and characterization of CAF-I, a human cell factor required for chromatin assembly during DNA replication in vitro. Cell 58, 15-25.
20. 20. Smith, S. & Stillman, B. (1991). Stepwise assembly of chromatin during DNA replication in vitro. EMBO J. 10, 971-980.
21. 21. Sobel, R.E., Cook, R.G. & Allis, C.D. (1994). Non-random acetylation of histone H4 by a cytoplasmic histone acetyltransferase as determined by novel methodology. J. Biol. Chem 269, 18576-18582.
22. 22. Sobel, R.E., Cook, R.G., Perry, C.A., Annunziato, A.T. & Allis, C.D. (1995). Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc. Natl Acad. Sci. USA 92, 1237-1241.
23. 23. Parthun, M.R., Widom, J. & Gottschling, D.E. (1996). The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 87, 85-94.
24. 24. Taunton, J., Hassig, C.A. & Schreiber, S.L. (1996). A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p. Science 272, 408-411.
25. 25. Rundlett, S.E., Carmen, A.A., Kobayashi, R., Bavykin, S., Turner, B.M. & Grunstein, M. (1996). HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription. Proc. Natl Acad. Sci. USA 93, 14503-14508.
26. 26. Krude, T. & Knippers, R. (1993). Nucleosome assembly during complementary DNA strand synthesis in extracts from mammalian cells. J. Biol. Chem. 268, 14432-14442.
27. 27. Kaufman, P.D., Kobayashi, R., Kessler, N. & Stillman, B. (1995). The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication. Cell 81, 1105-1114.
28. 28. Chang, L., Loranger, S.S., Mizzen, C., Ernst, S.G., Allis, C.D. & Annunziato, A.T. (1997). Histones in transit: cytosolic histone complexes and diacetylation of H4 during nucleosome assembly in human cells. Biochemistry 36, 469-480.
29. 29. Ito, T., Bulger, M., Kobayashi, R. & Kadonaga, J.T. (1996). Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly spaced nucleosomal arrays. Mol. Cell Biol. 16, 3112-3124.
30. 30. Verreault, A., Kaufman, P.D., Kobayashi, R. & Stillman, B. (1996). Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4. Cell 87, 95-104.
31. 31. Marheineke, K. & Krude, T. (1998). Nucleosome assembly activity and intracellular localization of human CAF-1 changes during the cell division cycle. J. Biol. Chem. 273, 15279-15286.
32. 32. Martinez-Balbas, M.A., Tsukiyama, T., Gdula, D. & Wu, C. (1998). Drosophila NURF-55, a WD repeat protein involved in histone metabolism. Proc. Natl Acad. Sci. USA 95, 132-137.
33. 33. Krude, T. (1995). Chromatin assembly factor I (CAF-1) colocalizes with replication foci in HeLa cell nuclei. Exp. Cell Res. 220, 304-311.
34. 34. Kamakaka, R.T., Bulger, M., Kaufman, P.D., Stillman, B. & Kadonaga, J.T. (1996). Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor I. Mol. Cell Biol. 16, 810-817.
35. 35. Shibahara, K. & Stillman, B. (1999). Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin. Cell 96, 575-585.
36. 36. Jonsson, Z.O. & Hubscher, U. (1997). Proliferating cell nuclear antigen: more than a clamp for DNA polymerases. Bioessays 19, 967-975.
37. 37. Kelman, Z. & Hurwitz, J. (1998). Protein-PCNA interactions: a DNA-scanning mechanism? Trends Biochem. Sci. 23, 236-238.
38. 38. Gaillard, P.H., Martini, E.M., Kaufman, P.D., Stillman, B., Moustacchi, E. & Almouzni, G. (1996). Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I. Cell 86, 887-896.
39. 39. Martini, E., Roche, D.M., Marheineke, K., Verreault, A. & Almouzni, G. (1998). Recruitment of phosphorylated chromatin assembly factor I to chromatin after UV irradiation of human cells. J. Cell Biol. 143, 563-755.
40. 40. Gaillard, P.H., Moggs, J.G., Roche, D.M., Quivy, J.P., Becker, P.B., Wood, R.D. & Almouzni, G. (1997). Initiation and bidirectional propagation of chromatin assembly from a target site for nucleotide excision repair. EMBO J. 16, 6281-6289. (erratum EMBO J. 16, 6613)
41. 41. Krude, T., Winter, A. & Knippers, R. (1994). Re-replication of SV40 minichromosomes is inhibited at the stage of chain elongation. Nucleic Acids Res. 22, 5265-5270.
42. 42. Krude, T. & Knippers, R. (1994). Minichromosome replication in vitro: inhibition of re-replication by replicatively assembled nucleosomes. J. Biol. Chem 269, 21021-21029.
43. 43. Enomoto, S., McCune-Zierath, P.D., Gerami-Nejad, M., Sanders, M.A. & Berman, J. (1997). RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivo. Genes Dev. 11, 358-370.
44. 44. Enomoto, S. & Berman, J. (1998). Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci. Genes Dev. 12, 219-232.
45. 45. Kaufman, P.D., Kobayashi, R. & Stillman, B. (1997). Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I. Genes Dev. 11, 345-357.
46. 46. Kaufman, P.D., Cohen, J.L. & Osley, M.A. (1998). Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I. Mol. Cell Biol. 18, 4793-4806.
47. 47. Qian, Z., Huang, H., Hong, J.Y., Burck, C.L., Johnston, S.D., Berman, J., Carol, A. & Liebman, S.W. (1998). Yeast Tyl retrotransposition is stimulated by a synergistic interaction between mutations in chromatin assembly factor I and histone regulatory proteins. Mol. Cell Biol. 18, 4783-4792.