-
1
-
-
1842619264
-
A transcriptional timetable of autumn senescence
-
Andersson, A., Keskitalo, J., Sjödin, A. et al. (2004) A transcriptional timetable of autumn senescence. Genome Biol. 5, R24.
-
(2004)
Genome Biol.
, vol.5
-
-
Andersson, A.1
Keskitalo, J.2
Sjödin, A.3
-
2
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner, M., Ball, C.A., Blake, J.A. et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
3
-
-
19344365567
-
Submission of microarray data to public repositories
-
Ball, C.A., Brazma, A., Causton, H. et al. (2004) Submission of microarray data to public repositories. PLoS Biol. 2, E317.
-
(2004)
PLoS Biol.
, vol.2
-
-
Ball, C.A.1
Brazma, A.2
Causton, H.3
-
4
-
-
0036277075
-
Functional genomics as applied to mapping transcription regulatory networks
-
Banerjee, N. and Zhang, M.Q. (2002) Functional genomics as applied to mapping transcription regulatory networks. Curr. Opin. Microbiol. 5, 313-317.
-
(2002)
Curr. Opin. Microbiol.
, vol.5
, pp. 313-317
-
-
Banerjee, N.1
Zhang, M.Q.2
-
5
-
-
12244287605
-
Gene expression in autumn leaves
-
Bhalerao, R., Keskitalo, J., Sterky, F. et al. (2003) Gene expression in autumn leaves. Plant Physiol. 131, 430-442.
-
(2003)
Plant Physiol.
, vol.131
, pp. 430-442
-
-
Bhalerao, R.1
Keskitalo, J.2
Sterky, F.3
-
6
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME) - Toward standards for microarray data
-
Brazma, A., Hingamp, P., Quackenbush, J. et al. (2001) Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat. Genet. 29, 365-371.
-
(2001)
Nat. Genet.
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
-
7
-
-
0037246058
-
ArrayExpress - A public repository for microarray gene expression data at the EBI
-
Brazma, A., Parkinson, H., Sarkans, U. et al. (2003) ArrayExpress - a public repository for microarray gene expression data at the EBI. Nucleic Acids Res. 31, 68-71.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
-
8
-
-
27644547502
-
MASQOT: A method for cDNA microarray spot quality control
-
Bylesjo, M., Eriksson, D., Sjodin, A., Sjostrom, M., Jansson, S., Antti, H. and Trygg, J. (2005) MASQOT: a method for cDNA microarray spot quality control. BMC Bioinformatics, 6, 250.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 250
-
-
Bylesjo, M.1
Eriksson, D.2
Sjodin, A.3
Sjostrom, M.4
Jansson, S.5
Antti, H.6
Trygg, J.7
-
9
-
-
51249169259
-
A simple and efficient method for isolating RNA from pine trees
-
Chang, S., Puryear, J. and Cairney, J. (1993) A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 11, 113-116.
-
(1993)
Plant Mol. Biol. Rep.
, vol.11
, pp. 113-116
-
-
Chang, S.1
Puryear, J.2
Cairney, J.3
-
10
-
-
0036900895
-
Fundamentals of experimental design for cDNA microarrays
-
Churchill, G.A. (2002) Fundamentals of experimental design for cDNA microarrays. Nat. Genet. 32, 490-495.
-
(2002)
Nat. Genet.
, vol.32
, pp. 490-495
-
-
Churchill, G.A.1
-
11
-
-
0347968038
-
NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
-
Craigon, D.J., James, N., Okyere, J., Higgins, J., Jotham, J. and May, S. (2004) NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res. 32, D575-D577.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Craigon, D.J.1
James, N.2
Okyere, J.3
Higgins, J.4
Jotham, J.5
May, S.6
-
12
-
-
0002594984
-
A rapid DNA isolation procedure for small quantities of fresh leaf tissue
-
Doyle, J.J. and Doyle, J.L. (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19, 11-15.
-
(1987)
Phytochem. Bull.
, vol.19
, pp. 11-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
13
-
-
0242281980
-
Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data
-
(Parmigiani, G., Garett, E.S., Irizarry, R.A., Zeger, S.L. eds). New York: Springer
-
Dudoit, S. and Yang, Y.H. (2002) Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data. In The Analysis of Gene Expression Data: Methods and Software (Parmigiani, G., Garett, E.S., Irizarry, R.A., Zeger, S.L. eds). New York: Springer, pp. 73-101.
-
(2002)
The Analysis of Gene Expression Data: Methods and Software
, pp. 73-101
-
-
Dudoit, S.1
Yang, Y.H.2
-
14
-
-
0036081355
-
Gene expression omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev, M. and Lash, A.E. (2002) Gene expression omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30, 207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
15
-
-
0032742129
-
Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
-
Ewing, R.M., Ben Kahla, A., Poirot, O., Lopez, F., Audic, S. and Claverie, J.M. (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res. 9, 950-959.
-
(1999)
Genome Res.
, vol.9
, pp. 950-959
-
-
Ewing, R.M.1
Ben Kahla, A.2
Poirot, O.3
Lopez, F.4
Audic, S.5
Claverie, J.M.6
-
16
-
-
16644384356
-
Model selection and efficiency testing for normalization of cDNA microarray data
-
Futschik, M. and Crompton, T. (2004a) Model selection and efficiency testing for normalization of cDNA microarray data. Genome Biol. 5, R60.
-
(2004)
Genome Biol.
, vol.5
-
-
Futschik, M.1
Crompton, T.2
-
17
-
-
17444399363
-
OLIN: Optimized normalization, visualization and quality testing of two-channel microarray data
-
Futschik, M.E. and Crompton, T. (2004b) OLIN: optimized normalization, visualization and quality testing of two-channel microarray data. Bioinformatics, 21, 1724-1726.
-
(2004)
Bioinformatics
, vol.21
, pp. 1724-1726
-
-
Futschik, M.E.1
Crompton, T.2
-
18
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman, R.C., Carey, V.J., Bates, D.M. et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80.
-
(2004)
Genome Biol.
, vol.5
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
-
19
-
-
0037303824
-
Induced gene expression in human brain after the split from chimpanzee
-
Gu, J. and Gu, X. (2003) Induced gene expression in human brain after the split from chimpanzee. Trends Genet. 19, 63-65.
-
(2003)
Trends Genet.
, vol.19
, pp. 63-65
-
-
Gu, J.1
Gu, X.2
-
20
-
-
0035807830
-
A transcriptional roadmap to wood formation
-
Hertzberg, M., Aspeborg, H., Schrader, J. et al. (2001) A transcriptional roadmap to wood formation. Proc. Natl Acad. Sci. USA, 98, 14732-14737.
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 14732-14737
-
-
Hertzberg, M.1
Aspeborg, H.2
Schrader, J.3
-
21
-
-
4043153341
-
Versatile genespecific sequence tags for Arabidopsis functional genomics: Transcript profiling and reverse genetics applications
-
Hilson, P., Allemeersch, J., Altmann, T. et al. (2004) Versatile genespecific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Res. 14, 2176-2189.
-
(2004)
Genome Res.
, vol.14
, pp. 2176-2189
-
-
Hilson, P.1
Allemeersch, J.2
Altmann, T.3
-
22
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack, D.A., Dennis, G. Jr, Sherman, B.T., Lane, H.C. and Lempicki, R.A. (2003) Identifying biological themes within lists of genes with EASE. Genome Biol. 4, R70.
-
(2003)
Genome Biol.
, vol.4
-
-
Hosack, D.A.1
Dennis Jr., G.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
23
-
-
0035180589
-
The Arabidopsis Information Resource (TAIR): A comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant
-
Huala, E., Dickerman, A.W., Garcia-Hernandez, M. et al. (2001) The Arabidopsis Information Resource (TAIR): a comprehensive database and web-based information retrieval, analysis, and visualization system for a model plant. Nucleic Acids Res. 29, 102-105.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 102-105
-
-
Huala, E.1
Dickerman, A.W.2
Garcia-Hernandez, M.3
-
24
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka, R. and Gentleman, R. (1996) R: a language for data analysis and graphics. J. Comput. Graph. Stat. 5, 299-314.
-
(1996)
J. Comput. Graph. Stat.
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
25
-
-
0042695794
-
Changes in gene expression in the wood-forming tissue of transgenic hybrid aspen with increased secondary growth
-
Israelsson, M., Eriksson, M.E., Hertzberg, M., Aspeborg, H., Nilsson, P. and Moritz, T. (2003) Changes in gene expression in the wood-forming tissue of transgenic hybrid aspen with increased secondary growth. Plant Mol. Biol. 52, 893-903.
-
(2003)
Plant Mol. Biol.
, vol.52
, pp. 893-903
-
-
Israelsson, M.1
Eriksson, M.E.2
Hertzberg, M.3
Aspeborg, H.4
Nilsson, P.5
Moritz, T.6
-
26
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa, M. and Goto, S. (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 28, 27-30.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
27
-
-
2542611479
-
Plant functional genomics: Opportunities in microarray databases and data mining
-
Kennedy, G.C. and Wilson, I.W. (2004) Plant functional genomics: opportunities in microarray databases and data mining. Funct. Plant Biol. 31, 295-314.
-
(2004)
Funct. Plant Biol.
, vol.31
, pp. 295-314
-
-
Kennedy, G.C.1
Wilson, I.W.2
-
28
-
-
0035032570
-
Statistical design and the analysis of gene expression microarray data
-
Kerr, M.K. and Churchill, G.A. (2001) Statistical design and the analysis of gene expression microarray data. Genet. Res. 77, 123-128.
-
(2001)
Genet. Res.
, vol.77
, pp. 123-128
-
-
Kerr, M.K.1
Churchill, G.A.2
-
29
-
-
0034927555
-
Analysis of variance for gene expression microarray data
-
Kerr, M.K., Martin, M. and Churchill, G.A. (2000) Analysis of variance for gene expression microarray data. J. Comput. Biol. 7, 819-837.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 819-837
-
-
Kerr, M.K.1
Martin, M.2
Churchill, G.A.3
-
30
-
-
0038325763
-
The poplar root transcriptome: Analysis of 7000 expressed sequence tags
-
Kohler, A., Delaruelle, C., Martin, D., Encelot, N. and Martin, F. (2003) The poplar root transcriptome: analysis of 7000 expressed sequence tags. FEBS Lett. 542, 37-41.
-
(2003)
FEBS Lett.
, vol.542
, pp. 37-41
-
-
Kohler, A.1
Delaruelle, C.2
Martin, D.3
Encelot, N.4
Martin, F.5
-
31
-
-
18744432825
-
Ranking: A closer look on globalisation methods for normalisation of gene expression arrays
-
Kroll, T.C. and Wolfl, S. (2002) Ranking: a closer look on globalisation methods for normalisation of gene expression arrays. Nucleic Acids Res. 30, e50.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Kroll, T.C.1
Wolfl, S.2
-
32
-
-
4644233008
-
Poplar genes encoding fasciclin-like arabinogalactan proteins are highly expressed in tension wood
-
Lafarguette, F., Leple, J.C., Dejardin, A., Laurans, F., Costa, G., Lesage-Descauses, M.C. and Pilate, G. (2004) Poplar genes encoding fasciclin-like arabinogalactan proteins are highly expressed in tension wood. New Phytol. 164, 107-121.
-
(2004)
New Phytol.
, vol.164
, pp. 107-121
-
-
Lafarguette, F.1
Leple, J.C.2
Dejardin, A.3
Laurans, F.4
Costa, G.5
Lesage-Descauses, M.C.6
Pilate, G.7
-
33
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., Dong, H., Byrne, M.C. et al. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat. Biotechnol. 14, 1675-1680.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
-
34
-
-
0036012343
-
Replicated microarray data
-
Lonnstedt, I. and Speed, T. (2002) Replicated microarray data. Stat. Sin. 12, 31-46.
-
(2002)
Stat. Sin.
, vol.12
, pp. 31-46
-
-
Lonnstedt, I.1
Speed, T.2
-
35
-
-
0032893083
-
MIPS: A database for genomes and protein sequences
-
Mewes, H.W., Heumann, K., Kaps, A., Mayer, K., Pfeiffer, F., Stocker, S. and Frishman, D. (1999) MIPS: a database for genomes and protein sequences. Nucleic Acids Res. 27, 44-48.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 44-48
-
-
Mewes, H.W.1
Heumann, K.2
Kaps, A.3
Mayer, K.4
Pfeiffer, F.5
Stocker, S.6
Frishman, D.7
-
36
-
-
28244489048
-
A genomic approach to investigate developmental cell death in woody tissues of Populus trees
-
Moreau, C., Aksenov, N., Lorenzo, M., Segerman, B., Funk, C., Nilsson, P., Jansson, S. and Tuominen, H. (2005) A genomic approach to investigate developmental cell death in woody tissues of Populus trees. Genome Biol. 6, R34.
-
(2005)
Genome Biol.
, vol.6
-
-
Moreau, C.1
Aksenov, N.2
Lorenzo, M.3
Segerman, B.4
Funk, C.5
Nilsson, P.6
Jansson, S.7
Tuominen, H.8
-
37
-
-
0038460047
-
AraCyc: A biochemical pathway database for Arabidopsis
-
Mueller, L.A., Zhang, P. and Rhee, S.Y. (2003) AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol. 132, 453-460.
-
(2003)
Plant Physiol.
, vol.132
, pp. 453-460
-
-
Mueller, L.A.1
Zhang, P.2
Rhee, S.Y.3
-
38
-
-
12544255680
-
Characterization of full-length enriched expressed sequence tags of stress-treated poplar leaves
-
Nanjo, T., Futamura, N., Nishiguchi, M., Igasaki, T., Shinozaki, K. and Shinohara, K. (2004) Characterization of full-length enriched expressed sequence tags of stress-treated poplar leaves. Plant Cell Physiol. 45, 1738-1748.
-
(2004)
Plant Cell Physiol.
, vol.45
, pp. 1738-1748
-
-
Nanjo, T.1
Futamura, N.2
Nishiguchi, M.3
Igasaki, T.4
Shinozaki, K.5
Shinohara, K.6
-
39
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W.R. and Lipman, D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. USA, 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
40
-
-
13444256039
-
Navigating public microarray databases
-
Penkett, C.J. and Bahler, G. (2004) Navigating public microarray databases. Comp. Funct. Genomics 5, 471-479.
-
(2004)
Comp. Funct. Genomics
, vol.5
, pp. 471-479
-
-
Penkett, C.J.1
Bahler, G.2
-
41
-
-
11844250650
-
Identification and analysis of safener-inducible expressed sequence tags in Populus using a cDNA microarray
-
Rishi, A.S., Munir, S., Kapur, V., Nelson, N.D. and Goyal, A. (2004) Identification and analysis of safener-inducible expressed sequence tags in Populus using a cDNA microarray. Planta, 220, 296-306.
-
(2004)
Planta
, vol.220
, pp. 296-306
-
-
Rishi, A.S.1
Munir, S.2
Kapur, V.3
Nelson, N.D.4
Goyal, A.5
-
42
-
-
33746994071
-
Evaluation of microarray data normalization procedures using spike-in experiments
-
Ryden, P., Andersson, H., Landfors, M., Naslund, L., Hartmanova, B., Noppa, L. and Sjostedt, A. (2006) Evaluation of microarray data normalization procedures using spike-in experiments. BMC Bioinformatics, 7, 300.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 300
-
-
Ryden, P.1
Andersson, H.2
Landfors, M.3
Naslund, L.4
Hartmanova, B.5
Noppa, L.6
Sjostedt, A.7
-
43
-
-
0037099005
-
BioArray Software Environment (BASE): A platform for comprehensive management and analysis of microarray data
-
SOFTWARE0003
-
Saal, L.H., Troein, C., Vallon-Christersson, J., Gruvberger, S., Borg, A. and Peterson, C. (2002) BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol. 3, SOFTWARE0003.
-
(2002)
Genome Biol.
, vol.3
-
-
Saal, L.H.1
Troein, C.2
Vallon-Christersson, J.3
Gruvberger, S.4
Borg, A.5
Peterson, C.6
-
44
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270, 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
45
-
-
16244362244
-
A gene expression map of Arabidopsis thaliana development
-
Schmid, M., Davison, T.S., Henz, S.R., Pape, U.J., Demar, M., Vingron, M., Scholkopf, B., Weigel, D. and Lohmann, J.U. (2005) A gene expression map of Arabidopsis thaliana development. Nat. Genet. 37, 501-506.
-
(2005)
Nat. Genet.
, vol.37
, pp. 501-506
-
-
Schmid, M.1
Davison, T.S.2
Henz, S.R.3
Pape, U.J.4
Demar, M.5
Vingron, M.6
Scholkopf, B.7
Weigel, D.8
Lohmann, J.U.9
-
46
-
-
0036084355
-
MIPS Arabidopsis thaliana Database (MAtDB): An integrated biological knowledge resource based on the first complete plant genome
-
Schoof, H., Zaccaria, P., Gundlach, H., Lemcke, K., Rudd, S., Kolesov, G., Arnold, R., Mewes, H.W. and Mayer, K.F. (2002) MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Res. 30, 91-93.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 91-93
-
-
Schoof, H.1
Zaccaria, P.2
Gundlach, H.3
Lemcke, K.4
Rudd, S.5
Kolesov, G.6
Arnold, R.7
Mewes, H.W.8
Mayer, K.F.9
-
47
-
-
6444224651
-
Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome
-
Schrader, J., Moyle, R., Bhalerao, R., Hertzberg, M., Lundeberg, J., Nilsson, P. and Bhalerao, R.P. (2004a) Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. Plant J. 40, 173-187.
-
(2004)
Plant J.
, vol.40
, pp. 173-187
-
-
Schrader, J.1
Moyle, R.2
Bhalerao, R.3
Hertzberg, M.4
Lundeberg, J.5
Nilsson, P.6
Bhalerao, R.P.7
-
48
-
-
4544352472
-
A high-resolution transcript profile across the wood-forming meristem of poplar identifies potential regulators of cambial stem cell identity
-
Schrader, J., Nilsson, J., Mellerowicz, E., Berglund, A., Nilsson, P., Hertzberg, M. and Sandberg, G. (2004b) A high-resolution transcript profile across the wood-forming meristem of poplar identifies potential regulators of cambial stem cell identity. Plant Cell, 16, 2278-2292.
-
(2004)
Plant Cell
, vol.16
, pp. 2278-2292
-
-
Schrader, J.1
Nilsson, J.2
Mellerowicz, E.3
Berglund, A.4
Nilsson, P.5
Hertzberg, M.6
Sandberg, G.7
-
49
-
-
4644337070
-
The response of the poplar transcriptome to wounding and subsequent infection by a viral pathogen
-
Smith, C.M., Rodriguez-Buey, M., Karlsson, J. and Campbell, M.M. (2004) The response of the poplar transcriptome to wounding and subsequent infection by a viral pathogen. New Phytol. 164, 123-136.
-
(2004)
New Phytol.
, vol.164
, pp. 123-136
-
-
Smith, C.M.1
Rodriguez-Buey, M.2
Karlsson, J.3
Campbell, M.M.4
-
50
-
-
4544341015
-
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
-
Article 3
-
Smyth, G. (2004) Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Appl. Genet. Mol. Biol. 3, No 1, Article 3.
-
(2004)
Stat. Appl. Genet. Mol. Biol.
, vol.3
, Issue.1
-
-
Smyth, G.1
-
51
-
-
13144302845
-
Gene discovery in the wood-forming tissues of poplar: Analysis of 5692 expressed sequence tags
-
Sterky, F., Regan, S., Karlsson, J. et al. (1998) Gene discovery in the wood-forming tissues of poplar: analysis of 5692 expressed sequence tags. Proc. Natl Acad. Sci. USA, 95, 13330-13335.
-
(1998)
Proc. Natl Acad. Sci. USA
, vol.95
, pp. 13330-13335
-
-
Sterky, F.1
Regan, S.2
Karlsson, J.3
-
52
-
-
4644282569
-
A Populus EST resource for plant functional genomics
-
Sterky, F., Bhalerao, R.R., Unneberg, P. et al. (2004) A Populus EST resource for plant functional genomics. Proc. Natl Acad. Sci. USA, 101, 13951-13956.
-
(2004)
Proc. Natl Acad. Sci. USA
, vol.101
, pp. 13951-13956
-
-
Sterky, F.1
Bhalerao, R.R.2
Unneberg, P.3
-
54
-
-
20744434593
-
A robust neural networks approach for spatial and intensity dependent normalization of cDNA microarray data
-
Tarca, A.L., Cooke, J.E. and Mackay, J. (2005) A robust neural networks approach for spatial and intensity dependent normalization of cDNA microarray data. Bioinformatics, 21, 2674-2683.
-
(2005)
Bioinformatics
, vol.21
, pp. 2674-2683
-
-
Tarca, A.L.1
Cooke, J.E.2
Mackay, J.3
-
55
-
-
21244452826
-
2
-
2. New Phytol. 167, 143-154.
-
(2005)
New Phytol.
, vol.167
, pp. 143-154
-
-
Taylor, G.1
Street, N.R.2
Tricker, P.J.3
Sjödin, A.4
Graham, L.5
Skogström, O.6
Calfapietra, C.7
Scarascia-Mugnozza, G.8
Jansson, S.9
-
56
-
-
12144291195
-
MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L.A., Rhee, S.Y. and Stitt, M. (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37, 914-939.
-
(2004)
Plant J.
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Blasing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Kruger, P.6
Selbig, J.7
Muller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
57
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
Tuskan, G., DiFazio, S., Jansson, S. et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313, 1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.1
DiFazio, S.2
Jansson, S.3
-
58
-
-
27244453164
-
Extension of the visualization tool MAPMAN to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses
-
Usadel, B., Nagel, A., Thimm, O. et al. (2005) Extension of the visualization tool MAPMAN to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses. Plant Physiol. 138, 1195-1204.
-
(2005)
Plant Physiol.
, vol.138
, pp. 1195-1204
-
-
Usadel, B.1
Nagel, A.2
Thimm, O.3
-
59
-
-
20044367625
-
An experimental evaluation of a loop versus a reference design for two-channel microarrays
-
Vinciotti, V., Khanin, R., D'Alimonte, D. et al. (2005) An experimental evaluation of a loop versus a reference design for two-channel microarrays. Bioinformatics, 21, 492-501.
-
(2005)
Bioinformatics
, vol.21
, pp. 492-501
-
-
Vinciotti, V.1
Khanin, R.2
D'Alimonte, D.3
-
60
-
-
2942511784
-
Clustering of the SOM easily reveals distinct gene expression patterns: Results of a reanalysis of lymphoma study
-
Wang, J., Delabie, J., Aasheim, H., Smeland, E. and Myklebost, O. (2002) Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study. BMC Bioinformatics, 3, 36.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 36
-
-
Wang, J.1
Delabie, J.2
Aasheim, H.3
Smeland, E.4
Myklebost, O.5
-
61
-
-
0042594501
-
New normalization methods for cDNA microarray data
-
Wilson, D.L., Buckley, M.J., Helliwell, C.A. and Wilson, I.W. (2003) New normalization methods for cDNA microarray data. Bioinformatics, 19, 1325-1332.
-
(2003)
Bioinformatics
, vol.19
, pp. 1325-1332
-
-
Wilson, D.L.1
Buckley, M.J.2
Helliwell, C.A.3
Wilson, I.W.4
-
63
-
-
27344443714
-
Near-optimal designs for dual-channel microarray studies
-
Wit, E., Nobile, A. and Khanin, R. (2005) Near-optimal designs for dual-channel microarray studies. Appl. Stat. 54, 817-830.
-
(2005)
Appl. Stat.
, vol.54
, pp. 817-830
-
-
Wit, E.1
Nobile, A.2
Khanin, R.3
-
64
-
-
45949123735
-
Principal component analysis
-
Wold, S., Esbensen, K. and Geladi, P. (1987) Principal component analysis. Chemom. Intell. Lab. Syst. 2, 37-52.
-
(1987)
Chemom. Intell. Lab. Syst.
, vol.2
, pp. 37-52
-
-
Wold, S.1
Esbensen, K.2
Geladi, P.3
-
65
-
-
0028253919
-
Quantitative genetics of growth and development in Populus.1. A three-generation comparison of tree architecture during the first 2 years of growth
-
Wu, R. and Stettler, R.F. (1994) Quantitative genetics of growth and development in Populus.1. A three-generation comparison of tree architecture during the first 2 years of growth. Theor. Appl. Genet. 89, 1046-1054.
-
(1994)
Theor. Appl. Genet.
, vol.89
, pp. 1046-1054
-
-
Wu, R.1
Stettler, R.F.2
-
66
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang, Y.H. and Speed, T. (2002) Design issues for cDNA microarray experiments. Nat. Rev. Genet. 3, 579-588.
-
(2002)
Nat. Rev. Genet.
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
67
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J. and Speed, T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res. 30, e15.
-
(2002)
Nucleic Acids Res.
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
68
-
-
13444264729
-
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox
-
Zimmermann, P., Hirsch-Hoffmann, M., Hennig, L. and Gruissem, W. (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136, 2621-2632.
-
(2004)
Plant Physiol.
, vol.136
, pp. 2621-2632
-
-
Zimmermann, P.1
Hirsch-Hoffmann, M.2
Hennig, L.3
Gruissem, W.4
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