-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
USA
-
Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Ares M Jr, Haussler D (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc Natl Acad Sci USA 97: 262-267
-
(2000)
Proc Natl Acad Sci
, vol.97
, pp. 262-267
-
-
Brown, M.P.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.S.6
Ares Jr., M.7
Haussler, D.8
-
3
-
-
0034714499
-
Gene expression profiling: Monitoring transcription and translation products using DNA microarrays and proteomics
-
Celis JE, Kruhoffer M, Gromove I, Frederiksen C, Ostergaard M, Thykjaer T, Gromova P, Yu J, Palsdottir H, Mangnusson N, et al (2000) Gene expression profiling: monitoring transcription and translation products using DNA microarrays and proteomics. FEBS Lett 480: 2-16
-
(2000)
FEBS Lett
, vol.480
, pp. 2-16
-
-
Celis, J.E.1
Kruhoffer, M.2
Gromove, I.3
Frederiksen, C.4
Ostergaard, M.5
Thykjaer, T.6
Gromova, P.7
Yu, J.8
Palsdottir, H.9
Mangnusson, N.10
-
4
-
-
9144256665
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
-
Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, et al (2004) Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms. Nucleic Acids Res 32: D311-D314
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Christie, K.R.1
Weng, S.2
Balakrishnan, R.3
Costanzo, M.C.4
Dolinski, K.5
Dwight, S.S.6
Engel, S.R.7
Feierbach, B.8
Fisk, D.G.9
Hirschman, J.E.10
-
5
-
-
0347968038
-
NASCArrays: A repository for microarray data generated by NASC's transcriptomics service
-
Craigon DJ, James N, Okyere J, Higgins J, Jotham J, May S (2004) NASCArrays: a repository for microarray data generated by NASC's transcriptomics service. Nucleic Acids Res 32: D575-D577
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Craigon, D.J.1
James, N.2
Okyere, J.3
Higgins, J.4
Jotham, J.5
May, S.6
-
6
-
-
0344464731
-
MetaGeneAlyse: Analysis of integrated transcriptional and metabolite data
-
Daub CO, Kloska S, Selbig J (2003) MetaGeneAlyse: analysis of integrated transcriptional and metabolite data. Bioinformatics 19: 2332-2333
-
(2003)
Bioinformatics
, vol.19
, pp. 2332-2333
-
-
Daub, C.O.1
Kloska, S.2
Selbig, J.3
-
7
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
De Risi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
De Risi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
8
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L (2000) Metabolite profiling for plant functional genomics. Nat Biotechnol 18: 1157-1161
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dörmann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
9
-
-
14744280370
-
A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: Comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness
-
Gibon Y, Blaesing OE, Hannemann J, Carillo P, Hohne M, Hendriks JH, Palacios N, Cross J, Selbig J, Stitt M (2004) A Robot-based platform to measure multiple enzyme activities in Arabidopsis using a set of cycling assays: comparison of changes of enzyme activities and transcript levels during diurnal cycles and in prolonged darkness. Plant Cell 16: 3304-3325
-
(2004)
Plant Cell
, vol.16
, pp. 3304-3325
-
-
Gibon, Y.1
Blaesing, O.E.2
Hannemann, J.3
Carillo, P.4
Hohne, M.5
Hendriks, J.H.6
Palacios, N.7
Cross, J.8
Selbig, J.9
Stitt, M.10
-
10
-
-
0036061833
-
Pathway Processor: A tool for integrating whole-genome expression results into metabolic networks
-
Grosu P, Townsend JP, Hartl DL, Cavalieri D (2002) Pathway Processor: a tool for integrating whole-genome expression results into metabolic networks. Genome Res 12: 1121-1126
-
(2002)
Genome Res
, vol.12
, pp. 1121-1126
-
-
Grosu, P.1
Townsend, J.P.2
Hartl, D.L.3
Cavalieri, D.4
-
11
-
-
0035999376
-
Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem
-
Hamburger D, Rezzonico E, MacDonald-Comber Petétot J, Somerville C, Poirier Y (2002) Identification and characterization of the Arabidopsis PHO1 gene involved in phosphate loading to the xylem. Plant Cell 14: 889-902
-
(2002)
Plant Cell
, vol.14
, pp. 889-902
-
-
Hamburger, D.1
Rezzonico, E.2
MacDonald-Comber Petétot, J.3
Somerville, C.4
Poirier, Y.5
-
12
-
-
31344439854
-
-
NASCarrays
-
Hammond JP, Bennett MJ, Broadley MR, White PJ (2004) Differential gene expression patterns in the phosphate deficient mutant, pho1. NASCarrays. http://affymetrix.arabidopsis.info/narrays/experimentpage.pl?experimentid=102 (February 1, 2005)
-
(2004)
Differential Gene Expression Patterns in the Phosphate Deficient Mutant, Pho1
-
-
Hammond, J.P.1
Bennett, M.J.2
Broadley, M.R.3
White, P.J.4
-
13
-
-
0037421634
-
Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure
-
Kadota K, Nishimura S, Bono H, Nakamura S, Hayashizaki Y, Okazaki Y, Takahashi K (2003) Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure. Physiol Genomics 12: 251-259
-
(2003)
Physiol Genomics
, vol.12
, pp. 251-259
-
-
Kadota, K.1
Nishimura, S.2
Bono, H.3
Nakamura, S.4
Hayashizaki, Y.5
Okazaki, Y.6
Takahashi, K.7
-
14
-
-
9444239213
-
A probabilistic functional network of yeast genes
-
Lee I, Date SV, Adai AT, Marcotte EM (2004) A probabilistic functional network of yeast genes. Science 306: 1555-1558
-
(2004)
Science
, vol.306
, pp. 1555-1558
-
-
Lee, I.1
Date, S.V.2
Adai, A.T.3
Marcotte, E.M.4
-
15
-
-
0033152620
-
Molecular and functional regulation of two NO3- uptake systems by N- and C-status of Arabidopsis plants
-
Lejay L, Tillard P, Lepetit M, Olive F, Filleur S, Daniel-Vedele F, Gojon A (1999) Molecular and functional regulation of two NO3- uptake systems by N- and C-status of Arabidopsis plants. Plant J 18: 509-519
-
(1999)
Plant J
, vol.18
, pp. 509-519
-
-
Lejay, L.1
Tillard, P.2
Lepetit, M.3
Olive, F.4
Filleur, S.5
Daniel-Vedele, F.6
Gojon, A.7
-
16
-
-
2942560476
-
Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3
-
Lloyd JC, Zakhleniuk OV (2004) Responses of primary and secondary metabolism to sugar accumulation revealed by microarray expression analysis of the Arabidopsis mutant, pho3. J Exp Bot 55: 1221-1230
-
(2004)
J Exp Bot
, vol.55
, pp. 1221-1230
-
-
Lloyd, J.C.1
Zakhleniuk, O.V.2
-
17
-
-
0037386626
-
Analysis of the eye developmental pathway in Drosophila using DNA microarrays
-
USA
-
Michaut L, Flister S, Neeb M, White KP, Certa U, Gehring WJ (2003) Analysis of the eye developmental pathway in Drosophila using DNA microarrays. Proc Natl Acad Sci USA 100: 4024-4029
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 4024-4029
-
-
Michaut, L.1
Flister, S.2
Neeb, M.3
White, K.P.4
Certa, U.5
Gehring, W.J.6
-
18
-
-
0038460047
-
AraCyc: A biochemical pathway database for Arabidopsis
-
Mueller LA, Zhang P, Rhee SY (2003) AraCyc: a biochemical pathway database for Arabidopsis. Plant Physiol 132: 453-460
-
(2003)
Plant Physiol
, vol.132
, pp. 453-460
-
-
Mueller, L.A.1
Zhang, P.2
Rhee, S.Y.3
-
20
-
-
1842607847
-
-
R Foundation for Statistical Computing, Vienna
-
R Development Core Team (2004) R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna. http://www.R-project.org (February 1, 2005)
-
(2004)
R: A Language and Environment for Statistical Computing
-
-
-
21
-
-
0037249498
-
The Arabidopsis Information Resource (TAIR): A model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
-
Rhee SY, Beavis W, Berardini TZ, Chen G, Dixon D, Doyle A, Garcia-Hernandez M, Huala E, Lander G, Montoya M, et al (2003) The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. Nucleic Acids Res 31: 224-228
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 224-228
-
-
Rhee, S.Y.1
Beavis, W.2
Berardini, T.Z.3
Chen, G.4
Dixon, D.5
Doyle, A.6
Garcia-Hernandez, M.7
Huala, E.8
Lander, G.9
Montoya, M.10
-
22
-
-
16544392329
-
Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen
-
Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M (2004) Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 136: 2483-2499
-
(2004)
Plant Physiol
, vol.136
, pp. 2483-2499
-
-
Scheible, W.R.1
Morcuende, R.2
Czechowski, T.3
Fritz, C.4
Osuna, D.5
Palacios-Rojas, N.6
Schindelasch, D.7
Thimm, O.8
Udvardi, M.K.9
Stitt, M.10
-
23
-
-
15844413351
-
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
-
Statnikov A, Aliferis CF, Tsamardinos I, Hardin D, Levy S (2005) A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis. Bioinformatics 21: 631-643
-
(2005)
Bioinformatics
, vol.21
, pp. 631-643
-
-
Statnikov, A.1
Aliferis, C.F.2
Tsamardinos, I.3
Hardin, D.4
Levy, S.5
-
24
-
-
12344328434
-
CSB.DB: A comprehensive systems-biology database
-
Steinhauser D, Usadel B, Luedemann A, Thimm O, Kopka J (2004) CSB.DB: a comprehensive systems-biology database. Bioinformatics 20: 3647-3651
-
(2004)
Bioinformatics
, vol.20
, pp. 3647-3651
-
-
Steinhauser, D.1
Usadel, B.2
Luedemann, A.3
Thimm, O.4
Kopka, J.5
-
25
-
-
0038742865
-
From measurements of metabolites to metabolomics: An 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions
-
Stitt M, Fernie AR (2003) From measurements of metabolites to metabolomics: an 'on the fly' perspective illustrated by recent studies of carbon-nitrogen interactions. Curr Opin Biotechnol 14: 136-144
-
(2003)
Curr Opin Biotechnol
, vol.14
, pp. 136-144
-
-
Stitt, M.1
Fernie, A.R.2
-
26
-
-
12144291195
-
MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37: 914-939
-
(2004)
Plant J
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Blasing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Kruger, P.6
Selbig, J.7
Muller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
27
-
-
0037783247
-
Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism
-
Wang R, Okamoto M, Xing X, Crawford NM (2003) Microarray analysis of the nitrate response in Arabidopsis roots and shoots reveals over 1,000 rapidly responding genes and new linkages to glucose, trehalose-6-phosphate, iron, and sulfate metabolism. Plant Physiol 132: 556-567
-
(2003)
Plant Physiol
, vol.132
, pp. 556-567
-
-
Wang, R.1
Okamoto, M.2
Xing, X.3
Crawford, N.M.4
-
28
-
-
16544369956
-
Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis
-
Wang R, Tischner R, Gutierrez RA, Hoffman M, Xing X, Chen M, Coruzzi G, Crawford NM (2004) Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. Plant Physiol 136: 2512-2522
-
(2004)
Plant Physiol
, vol.136
, pp. 2512-2522
-
-
Wang, R.1
Tischner, R.2
Gutierrez, R.A.3
Hoffman, M.4
Xing, X.5
Chen, M.6
Coruzzi, G.7
Crawford, N.M.8
-
29
-
-
0034745144
-
pho3: A phosphorus-deficient mutant of Arabidopsis thaliana (L.) Heynh
-
Zakhleniuk OV, Raines CA, Lloyd JC (2001) pho3: a phosphorus-deficient mutant of Arabidopsis thaliana (L.) Heynh. Planta 212: 529-534
-
(2001)
Planta
, vol.212
, pp. 529-534
-
-
Zakhleniuk, O.V.1
Raines, C.A.2
Lloyd, J.C.3
|