Proposal of Roseburia faecis sp. nov., Roseburia hominis sp. nov. and Roseburia inulinivorans sp. nov., based on isolates from human faeces

International Journal of Systematic and Evolutionary Microbiology

Volumn 56, Issue 10, 2006, Pages 2437-2441

  Duncan, Sylvia H ^a   Aminov, Rustam I ^a   Scott, Karen P ^a   Louis, Petra ^a   Stanton, Thaddeus B ^b   Flint, Harry J ^a  

^a ROWETT RESEARCH INSTITUTE   (United Kingdom)

^b NATIONAL ANIMAL DISEASE CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; AMYLOPECTIN; GLYCEROL; GUANINE NUCLEOTIDE; INULIN; PYRIMIDINE NUCLEOTIDE; RNA 16S; SORBITOL; XYLAN; XYLOSE;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; BACTERIUM ISOLATE; CONTROLLED STUDY; CULTURE MEDIUM; DNA CONTENT; FECES MICROFLORA; GENE CLUSTER; MOLECULAR PHYLOGENY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; RNA SEQUENCE; ROSEBURIA FAECIS; ROSEBURIA HOMINIS; ROSEBURIA INTESTINALIS; ROSEBURIA INULINIVORANS; STRAIN DIFFERENCE; TYPE STRAIN;

BACTERIA, ANAEROBIC; BASE COMPOSITION; CARBOHYDRATE METABOLISM; DNA, BACTERIAL; FATTY ACIDS; FECES; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; ROSEBURIA; ROSEBURIA HOMINIS; ROSEBURIA INTESTINALIS;

EID: 33749999805     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64098-0     Document Type: Article

References (20)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. M., Seidman, J. G., Smith, J. A. & Struhl, K. (1994). Current Protocols in Molecular Biology, vol. 1, section 2.4. New York: Wiley.
2. Barcenilla, A., Pryde, S. E., Martin, J. C., Duncan, S. H., Stewart, C. S., Henderson, C. & Flint, H. J. (2000). Phylogenetic relationships of butyrate-producing bacteria from the human gut. Appl Environ Microbiol 66, 1654-1661.
3. Duncan, S. H., Hold, G. L., Barcenilla, A., Stewart, C. S. & Flint, H. J. (2002a). Roseburia intestinalis sp. nov., a novel saccharolytic, butyrate-producing bacterium from human faeces. Int J Syst Evol Microbiol 52, 1615-1620.
4. Duncan, S. H., Hold, G. L., Harmsen, H. J. M., Stewart, C. S. & Flint, H. J. (2002b). Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov. Int J Syst Evol Microbiol 52, 2141-2146.
5. Duncan, S. H., Scott, K. P., Ramsay, A. G., Harmsen, H. J. M., Welling, G. W., Stewart, C. S. & Flint, H. J. (2003). Effects of alternative dietary substrates on competition between human colonic bacteria in an anaerobic fermentor system. Appl Environ Microbiol 69, 1136-1142.
6. Felsenstein, J. (1989). PHYLIP - Phylogeny inference package (version 3.2). Cladistics 5, 164-166.
7. Felsenstein, J. & Churchill, G. A. (1996). A hidden Markov model approach to variation among sites in rate of evolution. Mol Biol Evol 13, 93-104.
8. Hold, G. L., Schwiertz, A., Aminov, R. I., Blaut, M. & Flint, H. J. (2003). Oligonucleotide probes that detect quantitatively significant groups of butyrate-producing bacteria in human feces. Appl Environ Microbiol 69, 4320-4324.
9. Holdeman, L. V., Cato, E. P. & Moore, W. E. C. (1977). Anaerobe Laboratory Manual, 4th edn. Blacksburg: Virginia Polytechnic Institute and State University.
10. Louis, P., Duncan, S. H., McCrae, S. I., Millar, J., Jackson, M. S. & Flint, H. J. (2004). Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon. J Bacteriol 186, 2099-2106.
11. Maidak, B. L., Cole, J. R., Lilburn, T. G. & 7 other authors (2001). The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29, 173-174.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. 14. Anaerobe 3, 373-381.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Stanton, T. B. & Savage, D. C. (1983). Colonization of gnotobiotic mice by Roseburia cecicola, a motile, obligately anaerobic bacterium from murine ceca. Appl Environ Microbiol 45, 1677-1684.
16. Swofford, D. L. (2002). PAUP* - Phylogenetic Analysis Using Parsimony (*and other methods), version 4. Sunderland: Sinauer Associates.
17. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
18. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
19. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA for phylogenetic study. J Bacteriol 173, 697-703.
20. Wood, J., Scott, K. P., Avgustin, G., Newbold, C. J. & Flint, H. J. (1998). Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl Environ Microbiol 64, 3683-3689.