메뉴 건너뛰기




Volumn 4115 LNBI -III, Issue , 2006, Pages 444-453

Fuzzy k-Nearest neighbor method for protein secondary structure prediction and its parallel implementation

Author keywords

[No Author keywords available]

Indexed keywords

FEATURE EXTRACTION; MOLECULAR STRUCTURE; PARALLEL ALGORITHMS; PROTEINS; VECTORS;

EID: 33749575594     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/11816102_48     Document Type: Conference Paper
Times cited : (17)

References (24)
  • 1
    • 30344475200 scopus 로고    scopus 로고
    • Progress over the first decade of CASP experiments
    • Kryshtafovych, A., Venclovas, C., Fidelis, K., Moult, J.: Progress over the First Decade of CASP Experiments. Proteins, vo. 61 (2005) 225-236
    • (2005) Proteins , vol.61 , pp. 225-236
    • Kryshtafovych, A.1    Venclovas, C.2    Fidelis, K.3    Moult, J.4
  • 2
    • 4043058565 scopus 로고    scopus 로고
    • Prediction of protein tertiary structure using PROFESY, a novel method based on fragment assembly and conformational space annealing
    • Lee, J., Kim, S.-Y., Joo, K., Kim, I., Lee, J.: Prediction of Protein Tertiary Structure using PROFESY, a Novel Method Based on Fragment Assembly and Conformational Space Annealing. Proteins, vol. 56 (2004) 704-714
    • (2004) Proteins , vol.56 , pp. 704-714
    • Lee, J.1    Kim, S.-Y.2    Joo, K.3    Kim, I.4    Lee, J.5
  • 3
    • 14744276882 scopus 로고    scopus 로고
    • Protein structure prediction based on fragment assembly and parameter optimization
    • Lee, J., Kim, S.-Y., Lee, J.: Protein Structure Prediction Based on Fragment Assembly and Parameter Optimization. Biophys. Chem. vol. 115 (2005) 209-214
    • (2005) Biophys. Chem. , vol.115 , pp. 209-214
    • Lee, J.1    Kim, S.-Y.2    Lee, J.3
  • 4
    • 17044408048 scopus 로고    scopus 로고
    • Protein structure prediction based on fragment assembly and beta-strand pairing energy function
    • Lee, J., Kim, S.-Y., Lee, J.: Protein Structure Prediction Based on Fragment Assembly and Beta-strand Pairing Energy Function. J. Korean Phys. Soc. vol. 46 (2005) 707-712
    • (2005) J. Korean Phys. Soc. , vol.46 , pp. 707-712
    • Lee, J.1    Kim, S.-Y.2    Lee, J.3
  • 5
    • 0027291015 scopus 로고
    • Prediction of secondary structure at better than 70% accuracy
    • Rost, B., Sander, C.: Prediction of Secondary Structure at Better than 70% Accuracy. J. Mol. Biol. vol. 232 (1993) 584-599
    • (1993) J. Mol. Biol. , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 6
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones, D.: Protein Secondary Structure Prediction Based on Position-specific Scoring Matrices. J. Mol. Biol. vol. 292 (1999) 195-202
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.1
  • 7
    • 0033933636 scopus 로고    scopus 로고
    • Cascaded multiple classifiers for secondary structure prediction
    • Ouali, M., King, R.: Cascaded Multiple Classifiers for Secondary Structure Prediction. Protein Science, vol. 9 (1999) 1162-1176
    • (1999) Protein Science , vol.9 , pp. 1162-1176
    • Ouali, M.1    King, R.2
  • 8
    • 17844392864 scopus 로고    scopus 로고
    • Combining prediction of secondary structure and solvent accessibility in proteins
    • Adamczak, R., Porollo, A., Meller, J.: Combining Prediction of Secondary Structure and Solvent accessibility in proteins. Proteins, vol. 59 (2005) 467-475
    • (2005) Proteins , vol.59 , pp. 467-475
    • Adamczak, R.1    Porollo, A.2    Meller, J.3
  • 9
    • 0035957531 scopus 로고    scopus 로고
    • A novel method of protein secondary structure prediction with high segment overlap measure: Support vector machine approach
    • Hua, S., Sun, Z.: A Novel Method of Protein Secondary Structure Prediction with High Segment Overlap Measure: Support Vector Machine Approach. J. Mol. Biol. vol. 308 (2001) 397-407
    • (2001) J. Mol. Biol. , vol.308 , pp. 397-407
    • Hua, S.1    Sun, Z.2
  • 10
  • 11
    • 1842817419 scopus 로고    scopus 로고
    • Profile-based nearest neighbor method for pattern recognition
    • Joo, K., Lee, J., Kim, S.-Y., I., Kim, Lee, S.J., Lee, J.: Profile-based Nearest Neighbor Method for Pattern Recognition. J. Korean Phys. Soc. vol. 44 (2004) 599-604
    • (2004) J. Korean Phys. Soc. , vol.44 , pp. 599-604
    • Joo, K.1    Lee, J.2    Kim, S.-Y.3    Kim, I.4    Lee, S.J.5    Lee, J.6
  • 12
    • 14744280111 scopus 로고    scopus 로고
    • Prediction of the secondary structure of proteins using PREDICT, a nearest neighbor method on pattern space
    • Joo, K., Kim, I., Lee, J., Kim, S.-Y., Lee, S.J., Lee, J.: Prediction of the Secondary Structure of Proteins Using PREDICT, a Nearest Neighbor Method on Pattern Space. J. Korean Phys. Soc. vol. 45 (2004) 1441-1449
    • (2004) J. Korean Phys. Soc. , vol.45 , pp. 1441-1449
    • Joo, K.1    Kim, I.2    Lee, J.3    Kim, S.-Y.4    Lee, S.J.5    Lee, J.6
  • 13
    • 17444397116 scopus 로고    scopus 로고
    • Porter: A new, Accurate server for protein secondary structure prediction
    • Pollastri, G., McLysaght, A. Porter: a new, Accurate Server for Protein Secondary Structure Prediction. Bioinformatics vol. 21 (2004) 1719-1720
    • (2004) Bioinformatics , vol.21 , pp. 1719-1720
    • Pollastri, G.1    McLysaght, A.2
  • 14
    • 0142153209 scopus 로고    scopus 로고
    • Prediction of protein secondary structure with a reliability score estimated by local sequence clustering
    • Jiang, F.: Prediction of Protein Secondary Structure with a Reliability Score Estimated by Local Sequence Clustering. Protein Eng. vol. 16 (2003) 651-657
    • (2003) Protein Eng. , vol.16 , pp. 651-657
    • Jiang, F.1
  • 15
    • 0031585987 scopus 로고    scopus 로고
    • Protein secondary structure prediction using local alignments
    • Salamov A. A., Solovyev V. V.: Protein Secondary Structure Prediction Using Local Alignments. J. Mol. Biol. vol. 268 (1997) 31-35
    • (1997) J. Mol. Biol. , vol.268 , pp. 31-35
    • Salamov, A.A.1    Solovyev, V.V.2
  • 16
    • 1042268067 scopus 로고    scopus 로고
    • Prediction of protein relative solvent accessibility with support vector machines and long-range interaction 3D local descriptor
    • Kim, H., Park, H.: Prediction of Protein Relative Solvent Accessibility with Support Vector Machines and Long-range Interaction 3D Local Descriptor. Proteins, vol. 54 (2004) 557-562
    • (2004) Proteins , vol.54 , pp. 557-562
    • Kim, H.1    Park, H.2
  • 17
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W., Sander, C.: Dictionary of Protein Secondary Structure: Pattern Recognition of Hydrogen-bonded and Geometrical Features. Biopolymers vol. 22 (1983) 2577-2637
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 20
    • 20844452070 scopus 로고    scopus 로고
    • Prediction of protein solvent accessibility using Fuzzy k-Nearest neighbor method
    • Sim, J. H., Kim, S.-Y., Lee, J.: Prediction of Protein Solvent Accessibility Using Fuzzy k-Nearest Neighbor Method. Bioinformatics vol. 21 (2005) 2844-2849.
    • (2005) Bioinformatics , vol.21 , pp. 2844-2849
    • Sim, J.H.1    Kim, S.-Y.2    Lee, J.3
  • 21
    • 0033977581 scopus 로고    scopus 로고
    • The ASTRAL compendium for protein structure and sequence analysis
    • Brenner, S.E., Koehl, P., Levitt, M.: The ASTRAL Compendium for Protein Structure and Sequence Analysis. Nucleic Acids Res. vol. 28 (2000) 254-256
    • (2000) Nucleic Acids Res. , vol.28 , pp. 254-256
    • Brenner, S.E.1    Koehl, P.2    Levitt, M.3
  • 23
    • 0033081846 scopus 로고    scopus 로고
    • A modified definition of sov, a segment-based measurement for protein secondary structure prediction assessment
    • Zemla, A., Venclovas, C., Fidelis, K., Rost, B.: A Modified Definition of Sov, a Segment-Based Measurement for Protein Secondary Structure Prediction Assessment. Proteins, vol. 34 (1999) 220-223
    • (1999) Proteins , vol.34 , pp. 220-223
    • Zemla, A.1    Venclovas, C.2    Fidelis, K.3    Rost, B.4
  • 24
    • 9544250384 scopus 로고    scopus 로고
    • Comparing two K-category assignment by a K-category correlation coefficient
    • Gorodkin, J.: Comparing two K-category Assignment by a K-category Correlation Coefficient. Comput. Biol. and Chem. vol. 28 (2004) 367-374
    • (2004) Comput. Biol. and Chem. , vol.28 , pp. 367-374
    • Gorodkin, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.