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Volumn 13, Issue 2, 2005, Pages 97-106

Inhibition of translation by consecutive rare leucine codons in E. coli: Absence of effect of varying mRNA stability

Author keywords

Codon bias; CUA leucine codon; Inhibition by rare codons; RNase III and mRNA stability; T7 expression systems

Indexed keywords

ARGININE; LEUCINE; MESSENGER RNA; RIBONUCLEASE III; RIFAMPICIN; RNA POLYMERASE;

EID: 33749322772     PISSN: 10522166     EISSN: None     Source Type: Journal    
DOI: 10.3727/000000006783991881     Document Type: Article
Times cited : (5)

References (50)
  • 1
    • 0036389792 scopus 로고    scopus 로고
    • Improvement of human interferon HUIFNalpha2 and HCV core protein expression levels in Escherichia coli but not of HUIFNalpha8 by using the IRNA(AGA/AGG)
    • Acosta-Rivero, N.; Sanchez, J. C.; Morales, J. Improvement of human interferon HUIFNalpha2 and HCV core protein expression levels in Escherichia coli but not of HUIFNalpha8 by using the IRNA(AGA/AGG). Biochem. Biophys. Res. Commun. 296:1303-1309; 2002.
    • (2002) Biochem. Biophys. Res. Commun. , vol.296 , pp. 1303-1309
    • Acosta-Rivero, N.1    Sanchez, J.C.2    Morales, J.3
  • 2
    • 0024825088 scopus 로고
    • High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product
    • Brinkmann, U.; Mattes, R. E.; Buckel, P. High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product. Gene 85:109-114; 1989.
    • (1989) Gene , vol.85 , pp. 109-114
    • Brinkmann, U.1    Mattes, R.E.2    Buckel, P.3
  • 3
    • 0030568996 scopus 로고    scopus 로고
    • High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli
    • Calderone, T. L.; Stevens, R. D.; Oas, T. G. High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli. J. Mol. Biol. 262:407-412; 1996.
    • (1996) J. Mol. Biol. , vol.262 , pp. 407-412
    • Calderone, T.L.1    Stevens, R.D.2    Oas, T.G.3
  • 4
    • 0022997615 scopus 로고
    • Transcription attenuation in Salmonella typhimurium: The significance of rare leucine codons in the leu leader
    • Carter, P. W.; Bartkus, J. M.; Calvo, J. M. Transcription attenuation in Salmonella typhimurium: The significance of rare leucine codons in the leu leader. Proc. Natl. Acad. Sci. USA 83:8127-8131; 1986.
    • (1986) Proc. Natl. Acad. Sci. USA , vol.83 , pp. 8127-8131
    • Carter, P.W.1    Bartkus, J.M.2    Calvo, J.M.3
  • 5
    • 0025348395 scopus 로고
    • Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes
    • Chen, G. F.; Inouye, M. Suppression of the negative effect of minor arginine codons on gene expression; preferential usage of minor codons within the first 25 codons of the Escherichia coli genes. Nucleic Acids Res. 18:1465-1473; 1990.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 1465-1473
    • Chen, G.F.1    Inouye, M.2
  • 6
    • 0035184417 scopus 로고    scopus 로고
    • Reversal of inhibition by the T7 concatemer junction sequence on expression from a downstream T7 promoter
    • Cheng, L.; Goldman, E. Reversal of inhibition by the T7 concatemer junction sequence on expression from a downstream T7 promoter. Gene Expr. 9:257-264; 2001.
    • (2001) Gene Expr. , vol.9 , pp. 257-264
    • Cheng, L.1    Goldman, E.2
  • 7
    • 0023748145 scopus 로고
    • Use of tRNA suppressors to probe regulation of Escherichia coli release factor 2
    • Curran, J. R; Yarus, M. Use of tRNA suppressors to probe regulation of Escherichia coli release factor 2. J. Mol. Biol. 203:75-83; 1988.
    • (1988) J. Mol. Biol. , vol.203 , pp. 75-83
    • Curran, J.R.1    Yarus, M.2
  • 10
    • 0038179369 scopus 로고    scopus 로고
    • Selective charging of tRNA isoacceptors explains patterns of codon usage
    • Elf, J.; Nilsson, D.; Tenson, T.; Ehrenberg, M. Selective charging of tRNA isoacceptors explains patterns of codon usage. Science 300:1718-1722; 2003.
    • (2003) Science , vol.300 , pp. 1718-1722
    • Elf, J.1    Nilsson, D.2    Tenson, T.3    Ehrenberg, M.4
  • 11
    • 0345255236 scopus 로고    scopus 로고
    • Evidence that the bypassing ribosome travels through the coding gap
    • Gallant, J.; Bonthuis, P.; Lindsley, D. Evidence that the bypassing ribosome travels through the coding gap. Proc. Natl. Acad. Sci. USA 100:13430-13435; 2003.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13430-13435
    • Gallant, J.1    Bonthuis, P.2    Lindsley, D.3
  • 12
    • 0032506003 scopus 로고    scopus 로고
    • Ribosomes can slide over and beyond "hungry" codons, resuming protein chain elongation many nucleotides downstream
    • Gallant, J. A.; Lindsley, D. Ribosomes can slide over and beyond "hungry" codons, resuming protein chain elongation many nucleotides downstream. Proc. Natl. Acad. Sci. USA 95:13771-13776; 1998.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 13771-13776
    • Gallant, J.A.1    Lindsley, D.2
  • 14
    • 0030799017 scopus 로고    scopus 로고
    • Messenger RNA release from ribosomes during 5′-translational blockage by consecutive low-usage arginine but not leucine codons in Escherichia coli
    • Erratum 27:669; 1998
    • Gao, W.; Tyagi, S.; Kramer, F. R.; Goldman, E. Messenger RNA release from ribosomes during 5′-translational blockage by consecutive low-usage arginine but not leucine codons in Escherichia coli. Mol. Microbiol. 25:707-716; 1997 (Erratum 27:669; 1998).
    • (1997) Mol. Microbiol. , vol.25 , pp. 707-716
    • Gao, W.1    Tyagi, S.2    Kramer, F.R.3    Goldman, E.4
  • 15
    • 0028446542 scopus 로고
    • Expression of chicken linker histones in E. coli: Sources of problems and methods for overcoming some of the difficulties
    • Gerchman, S. E.; Graziano, V.; Ramakrishnan, V. Expression of chicken linker histones in E. coli: Sources of problems and methods for overcoming some of the difficulties. Protein Expr. Purif. 5:242-251; 1994.
    • (1994) Protein Expr. Purif. , vol.5 , pp. 242-251
    • Gerchman, S.E.1    Graziano, V.2    Ramakrishnan, V.3
  • 17
    • 0028907431 scopus 로고
    • Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli
    • Goldman, E.; Rosenberg, A.; Zubay, G.; Studier, F. W. Consecutive low-usage leucine codons block translation only when near the 5′ end of a message in Escherichia coli. J. Mol. Biol. 245:467-473; 1995.
    • (1995) J. Mol. Biol. , vol.245 , pp. 467-473
    • Goldman, E.1    Rosenberg, A.2    Zubay, G.3    Studier, F.W.4
  • 18
    • 1842351463 scopus 로고
    • Investigating codon usage in E. coli
    • Goldman, E.; Zubay, G. Investigating codon usage in E. coli. Methods Mol. Genet. 3:159-178; 1994.
    • (1994) Methods Mol. Genet. , vol.3 , pp. 159-178
    • Goldman, E.1    Zubay, G.2
  • 19
    • 0038463475 scopus 로고    scopus 로고
    • Effects of codon usage versus putative 5′-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm
    • Griswold, K. E.; Mahmood, N. A.; Iverson, B. L.; Georgiou, G. Effects of codon usage versus putative 5′-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm. Protein Expr. Purif. 27:134-142; 2003.
    • (2003) Protein Expr. Purif. , vol.27 , pp. 134-142
    • Griswold, K.E.1    Mahmood, N.A.2    Iverson, B.L.3    Georgiou, G.4
  • 21
    • 0032007853 scopus 로고    scopus 로고
    • Strategies for optimizing heterologous protein expression in Escherichia coli
    • Hannig, G.; Makrides, S. C. Strategies for optimizing heterologous protein expression in Escherichia coli. Trends Biotechnol. 16:54-60; 1998.
    • (1998) Trends Biotechnol. , vol.16 , pp. 54-60
    • Hannig, G.1    Makrides, S.C.2
  • 22
    • 0023465266 scopus 로고
    • Role of codon choice in the leader region of the ilvGMEDA operon of Serratia marcescens
    • Harms, E.; Umbarger, H. E. Role of codon choice in the leader region of the ilvGMEDA operon of Serratia marcescens. J. Bacteriol. 169:5668-5677; 1987.
    • (1987) J. Bacteriol. , vol.169 , pp. 5668-5677
    • Harms, E.1    Umbarger, H.E.2
  • 23
    • 0033385013 scopus 로고    scopus 로고
    • The T7 concatemer junction sequence interferes with expression from a downstream T7 promoter in vivo
    • Harvey, B.; Korus, M.; Goldman, E. The T7 concatemer junction sequence interferes with expression from a downstream T7 promoter in vivo. Gene Expr. 8:141-149; 1999.
    • (1999) Gene Expr. , vol.8 , pp. 141-149
    • Harvey, B.1    Korus, M.2    Goldman, E.3
  • 24
    • 0032878235 scopus 로고    scopus 로고
    • High level expression of Thermococcus litoralis 4-alpha- glucanotransferase in a soluble form in Escherichia coli with a novel expression system involving minor arginine tRNAs and GroELS
    • Imamura, H.; Jeon, B.; Wakagi, T.; Matsuzawa, H. High level expression of Thermococcus litoralis 4-alpha-glucanotransferase in a soluble form in Escherichia coli with a novel expression system involving minor arginine tRNAs and GroELS. FEBS Lett. 457:393-396; 1999.
    • (1999) FEBS Lett. , vol.457 , pp. 393-396
    • Imamura, H.1    Jeon, B.2    Wakagi, T.3    Matsuzawa, H.4
  • 25
    • 0026544038 scopus 로고
    • Bacteriophage T7 RNA polymerase travels far ahead of ribosomes in vivo
    • Iost, I.; Guillerez, J.; Dreyfus, M. Bacteriophage T7 RNA polymerase travels far ahead of ribosomes in vivo. J. Bacteriol. 174:619-622; 1992.
    • (1992) J. Bacteriol. , vol.174 , pp. 619-622
    • Iost, I.1    Guillerez, J.2    Dreyfus, M.3
  • 26
    • 18844362113 scopus 로고    scopus 로고
    • Strategies for efficient production of heterologous proteins in Escherichia coli
    • Jana, S.; Deb, J. K. Strategies for efficient production of heterologous proteins in Escherichia coli. Appl. Microbiol. Biotechnol. 67:289-298; 2005.
    • (2005) Appl. Microbiol. Biotechnol. , vol.67 , pp. 289-298
    • Jana, S.1    Deb, J.K.2
  • 27
    • 0028804911 scopus 로고
    • Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli
    • Kane, J. F. Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli. Curr. Opin. Biotechnol. 6:494-500; 1995.
    • (1995) Curr. Opin. Biotechnol. , vol.6 , pp. 494-500
    • Kane, J.F.1
  • 28
    • 0035996712 scopus 로고    scopus 로고
    • Processive degradation of nascent polypeptides, triggered by tandem AGA codons, limits the accumulation of recombinant tobacco etch virus protease in Escherichia coli BL21(DE3)
    • Kapust, R. B.; Routzahn, K. M.; Waugh, D. S. Processive degradation of nascent polypeptides, triggered by tandem AGA codons, limits the accumulation of recombinant tobacco etch virus protease in Escherichia coli BL21(DE3). Protein Expr. Purif. 24:61-70; 2002.
    • (2002) Protein Expr. Purif. , vol.24 , pp. 61-70
    • Kapust, R.B.1    Routzahn, K.M.2    Waugh, D.S.3
  • 29
    • 0033848344 scopus 로고    scopus 로고
    • Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage
    • Kleber-Janke, T.; Becker, W. M. Use of modified BL21(DE3) Escherichia coli cells for high-level expression of recombinant peanut allergens affected by poor codon usage. Protein Expr. Purif. 19:419-424; 2000.
    • (2000) Protein Expr. Purif. , vol.19 , pp. 419-424
    • Kleber-Janke, T.1    Becker, W.M.2
  • 30
    • 0034937294 scopus 로고    scopus 로고
    • Codon-usage based regulation of colicin K synthesis by the stress alarmone ppGpp
    • Erratum 42:1385; 2001
    • Kuhar, I.; van Putten, J. P.; Zgur-Bertok, D.; Gaastra, W.; Jordi, B. J. Codon-usage based regulation of colicin K synthesis by the stress alarmone ppGpp. Mol. Microbiol. 41:207-216; 2001 (Erratum 42:1385; 2001).
    • (2001) Mol. Microbiol. , vol.41 , pp. 207-216
    • Kuhar, I.1    Van Putten, J.P.2    Zgur-Bertok, D.3    Gaastra, W.4    Jordi, B.J.5
  • 31
    • 0036130554 scopus 로고    scopus 로고
    • Overexpression and purification of the hepatitis B e antigen precursor
    • Laine, S.; Salhi, S.; Rossignol, J. M. Overexpression and purification of the hepatitis B e antigen precursor. J. Virol. Methods 103:67-74; 2002.
    • (2002) J. Virol. Methods , vol.103 , pp. 67-74
    • Laine, S.1    Salhi, S.2    Rossignol, J.M.3
  • 32
    • 0033970577 scopus 로고    scopus 로고
    • Enhanced production of recombinant Mycobacterium tuberculosis antigens in Escherichia coli by replacement of low-usage codons
    • Lakey, D. L.; Voladri, R. K.; Edwards, K. M.; Hager, C.; Samten, B.; Wallis, R. S.; Barnes, P. F.; Kernodle, D. S. Enhanced production of recombinant Mycobacterium tuberculosis antigens in Escherichia coli by replacement of low-usage codons. Infect. Immun. 68:233-238; 2000.
    • (2000) Infect. Immun. , vol.68 , pp. 233-238
    • Lakey, D.L.1    Voladri, R.K.2    Edwards, K.M.3    Hager, C.4    Samten, B.5    Wallis, R.S.6    Barnes, P.F.7    Kernodle, D.S.8
  • 33
    • 0036412057 scopus 로고    scopus 로고
    • Cloning and hemolysin-mediated secretory expression of a codon-optimized synthetic human interleukin-6 gene in Escherichia coli
    • Li, Y.; Chen, C. X.; von Specht, B. U.; Hahn, H. P. Cloning and hemolysin-mediated secretory expression of a codon-optimized synthetic human interleukin-6 gene in Escherichia coli. Protein Expr. Purif. 25:437-447; 2002.
    • (2002) Protein Expr. Purif. , vol.25 , pp. 437-447
    • Li, Y.1    Chen, C.X.2    Von Specht, B.U.3    Hahn, H.P.4
  • 35
    • 0038724194 scopus 로고    scopus 로고
    • Ribosome bypassing elicited by tRNA depletion
    • Lindsley, D.; Gallant, J.; Guarneros, G. Ribosome bypassing elicited by tRNA depletion. Mol. Microbiol. 48:1267-1274; 2003.
    • (2003) Mol. Microbiol. , vol.48 , pp. 1267-1274
    • Lindsley, D.1    Gallant, J.2    Guarneros, G.3
  • 36
    • 0029828233 scopus 로고    scopus 로고
    • Strategies for achieving high-level expression of genes in Escherichia coli
    • Makrides, S. C. Strategies for achieving high-level expression of genes in Escherichia coli. Microbiol. Rev. 60:512-538; 1996.
    • (1996) Microbiol. Rev. , vol.60 , pp. 512-538
    • Makrides, S.C.1
  • 37
    • 0037297122 scopus 로고    scopus 로고
    • Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli
    • McNulty, D. E.; Claffee, B. A.; Huddleston, M. J.; Kane, J. F. Mistranslational errors associated with the rare arginine codon CGG in Escherichia coli. Protein Expr. Purif. 27:365-374; 2003.
    • (2003) Protein Expr. Purif. , vol.27 , pp. 365-374
    • McNulty, D.E.1    Claffee, B.A.2    Huddleston, M.J.3    Kane, J.F.4
  • 38
    • 0042065209 scopus 로고    scopus 로고
    • The pair of arginine codons AGA AGG close to the initiation codon of the lambda int gene inhibits cell growth and protein synthesis by accumulating peptidyl-tRNAArg4
    • Olivares-Trejo, J. J.; Bueno-Martinez, J. G.; Guameros, G.; Hernandez-Sanchez, J. The pair of arginine codons AGA AGG close to the initiation codon of the lambda int gene inhibits cell growth and protein synthesis by accumulating peptidyl-tRNAArg4. Mol. Microbiol. 49:1043-1049; 2003.
    • (2003) Mol. Microbiol. , vol.49 , pp. 1043-1049
    • Olivares-Trejo, J.J.1    Bueno-Martinez, J.G.2    Guameros, G.3    Hernandez-Sanchez, J.4
  • 39
    • 0022423266 scopus 로고
    • Cleavage within an RNase III site can control mRNA stability and protein synthesis in vivo
    • Panayotatos, N.; Truong, K. Cleavage within an RNase III site can control mRNA stability and protein synthesis in vivo. Nucleic Acids Res. 13:2227-2240; 1985.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 2227-2240
    • Panayotatos, N.1    Truong, K.2
  • 40
    • 3142662719 scopus 로고    scopus 로고
    • Preferential codons enhancing the expression level of human beta-defensin-2 in recombinant Escherichia coli
    • Peng, L.; Xu, Z.; Fang, X.; Wang, F.; Yang, S.; Cen, P. Preferential codons enhancing the expression level of human beta-defensin-2 in recombinant Escherichia coli. Protein Pept. Lett. 11:339-344; 2004.
    • (2004) Protein Pept. Lett. , vol.11 , pp. 339-344
    • Peng, L.1    Xu, Z.2    Fang, X.3    Wang, F.4    Yang, S.5    Cen, P.6
  • 41
    • 0022555852 scopus 로고
    • Transcription termination and the regulation of gene expression
    • Platt, T. Transcription termination and the regulation of gene expression. Annu. Rev. Biochem. 55:339-372; 1986.
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 339-372
    • Platt, T.1
  • 42
    • 0033575660 scopus 로고    scopus 로고
    • SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity
    • Roche, E. D.; Sauer, R. T. SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity. EMBO J. 18:4579-4589; 1999.
    • (1999) EMBO J. , vol.18 , pp. 4579-4589
    • Roche, E.D.1    Sauer, R.T.2
  • 43
    • 0027513392 scopus 로고
    • Effects of consecutive AGG codons on translation in Escherichia coli demonstrated with a versatile codon test system
    • Rosenberg, A. H.; Goldman, E.; Dunn, J. J.; Studier, F. W.; Zubay, G. Effects of consecutive AGG codons on translation in Escherichia coli demonstrated with a versatile codon test system. J. Bacteriol. 175:716-722; 1993.
    • (1993) J. Bacteriol. , vol.175 , pp. 716-722
    • Rosenberg, A.H.1    Goldman, E.2    Dunn, J.J.3    Studier, F.W.4    Zubay, G.5
  • 44
    • 10644255526 scopus 로고    scopus 로고
    • Advanced genetic strategies for recombinant protein expression in Escherichia coli
    • Sorensen, H. P.; Mortensen, K. K. Advanced genetic strategies for recombinant protein expression in Escherichia coli. J. Biotechnol. 115:113-128; 2005.
    • (2005) J. Biotechnol. , vol.115 , pp. 113-128
    • Sorensen, H.P.1    Mortensen, K.K.2
  • 45
    • 0026279733 scopus 로고
    • Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system
    • Studier, F. W. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol. 219:37-44; 1991.
    • (1991) J. Mol. Biol. , vol.219 , pp. 37-44
    • Studier, F.W.1
  • 47
    • 0242523959 scopus 로고    scopus 로고
    • A salvage pathway for protein structures: TmRNA and trans-translation
    • Withey, J. H.; Friedman, D. I. A salvage pathway for protein structures: tmRNA and trans-translation. Annu. Rev. Microbiol. 57:101-123; 2003.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 101-123
    • Withey, J.H.1    Friedman, D.I.2
  • 48
    • 0346850783 scopus 로고    scopus 로고
    • Codon optimization reveals critical factors for high level expression of two rare codon genes in Escherichia coli: RNA stability and secondary structure but not tRNA abundance
    • Wu, X.; Jornvall, H.; Berndt, K. D.; Oppermann, U. Codon optimization reveals critical factors for high level expression of two rare codon genes in Escherichia coli: RNA stability and secondary structure but not tRNA abundance. Biochem. Biophys. Res. Commun. 313:89-96; 2004.
    • (2004) Biochem. Biophys. Res. Commun. , vol.313 , pp. 89-96
    • Wu, X.1    Jornvall, H.2    Berndt, K.D.3    Oppermann, U.4
  • 49
    • 0033854940 scopus 로고    scopus 로고
    • Simple and efficient method for heterologous expression of clostridial proteins
    • Zdanovsky, A. G.; Zdanovskaia, M. V. Simple and efficient method for heterologous expression of clostridial proteins. Appl. Environ. Microbiol. 66:3166-3173; 2000.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3166-3173
    • Zdanovsky, A.G.1    Zdanovskaia, M.V.2
  • 50
    • 1442289362 scopus 로고    scopus 로고
    • Enhanced expression of a recombinant malaria candidate vaccine in Escherichia coli by codon optimization
    • Zhou, Z.; Schnake, P.; Xiao, L.; Lal, A. A. Enhanced expression of a recombinant malaria candidate vaccine in Escherichia coli by codon optimization. Protein Expr. Purif. 34:87-94; 2004.
    • (2004) Protein Expr. Purif. , vol.34 , pp. 87-94
    • Zhou, Z.1    Schnake, P.2    Xiao, L.3    Lal, A.A.4


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