-
1
-
-
2642689666
-
The hydrogen hypothesis for the first eukaryote
-
Martin W., and Muller M. The hydrogen hypothesis for the first eukaryote. Nature 392 6671 (1998) 15-16
-
(1998)
Nature
, vol.392
, Issue.6671
, pp. 15-16
-
-
Martin, W.1
Muller, M.2
-
2
-
-
0031735879
-
Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis
-
Moreira D., and Lopez-Garcia P. Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J. Mol. Evol. 47 5 (1998) 517-530
-
(1998)
J. Mol. Evol.
, vol.47
, Issue.5
, pp. 517-530
-
-
Moreira, D.1
Lopez-Garcia, P.2
-
4
-
-
27544434211
-
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes
-
Gabaldon T., and Huynen M.A. Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. Bioinformatics 21 2 (2005) ii144-ii150
-
(2005)
Bioinformatics
, vol.21
, Issue.2
-
-
Gabaldon, T.1
Huynen, M.A.2
-
5
-
-
0033561361
-
Animal mitochondrial genomes
-
Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 8 (1999) 1767-1780
-
(1999)
Nucleic Acids Res.
, vol.27
, Issue.8
, pp. 1767-1780
-
-
Boore, J.L.1
-
6
-
-
0023480940
-
Evolution of animal mtDNA: relevance for population and systematics
-
Moritz C., Dowling T.E., and Brown W.E. Evolution of animal mtDNA: relevance for population and systematics. Ann. Rev. Ecolog. Syst. 18 (1987) 269-292
-
(1987)
Ann. Rev. Ecolog. Syst.
, vol.18
, pp. 269-292
-
-
Moritz, C.1
Dowling, T.E.2
Brown, W.E.3
-
7
-
-
0008739709
-
The role of tRNA genes in the evolution of animal mtDNA
-
Quagliarello E., Papa S., Palmieri F., and Saccone C. (Eds), Elsevier, Amsterdam
-
Saccone C., Attimonelli M., De Giorgi C., Lanave C., and Sbisa` E. The role of tRNA genes in the evolution of animal mtDNA. In: Quagliarello E., Papa S., Palmieri F., and Saccone C. (Eds). Structure, Function and Biogenesis of Energy Transfer Systems (1990), Elsevier, Amsterdam 93-96
-
(1990)
Structure, Function and Biogenesis of Energy Transfer Systems
, pp. 93-96
-
-
Saccone, C.1
Attimonelli, M.2
De Giorgi, C.3
Lanave, C.4
Sbisa, E.5
-
8
-
-
0021277009
-
A new method for calculating evolutionary substitution rates
-
Lanave C., Preparata G., Saccone C., and Serio G. A new method for calculating evolutionary substitution rates. J. Mol. Evol. 20 1 (1984) 86-93
-
(1984)
J. Mol. Evol.
, vol.20
, Issue.1
, pp. 86-93
-
-
Lanave, C.1
Preparata, G.2
Saccone, C.3
Serio, G.4
-
9
-
-
0033918896
-
Lineage-specific evolutionary rate in mammalian mtDNA
-
Gissi C., Reyes A., Pesole G., and Saccone C. Lineage-specific evolutionary rate in mammalian mtDNA. Mol. Biol. Evol. 17 (2000) 1022-1031
-
(2000)
Mol. Biol. Evol.
, vol.17
, pp. 1022-1031
-
-
Gissi, C.1
Reyes, A.2
Pesole, G.3
Saccone, C.4
-
10
-
-
33749172073
-
-
C. Saccone, G. Pesole, Handbook of Comparative Genomics: Principles and Methodology, 2003, Wiley-Liss, J.Willey and Sons Pub., Inc. Hoboken NJ, USA.
-
-
-
-
11
-
-
1542376765
-
Congruent mammalian trees from mt and nuclear genes using Bayesian methods
-
Reyes A., Gissi C., Catzeflis F., Nevo E., Pesole G., and Saccone C. Congruent mammalian trees from mt and nuclear genes using Bayesian methods. Mol. Biol. Evol. 21 (2004) 397-403
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 397-403
-
-
Reyes, A.1
Gissi, C.2
Catzeflis, F.3
Nevo, E.4
Pesole, G.5
Saccone, C.6
-
12
-
-
0025317141
-
Influence of base composition on quantitative estimates of gene evolution
-
Saccone C., Lanave C., Pesole G., and Preparata G. Influence of base composition on quantitative estimates of gene evolution. Methods Enzymol. 183 (1990) 570-583
-
(1990)
Methods Enzymol.
, vol.183
, pp. 570-583
-
-
Saccone, C.1
Lanave, C.2
Pesole, G.3
Preparata, G.4
-
13
-
-
0842285683
-
Comparative genomics and the evolution of human mtDNA: assessing the effects of selection
-
Elson J.L., Turnbull D.M., and Howell N. Comparative genomics and the evolution of human mtDNA: assessing the effects of selection. Am. J. Hum. Genet. 74 (2004) 229-238
-
(2004)
Am. J. Hum. Genet.
, vol.74
, pp. 229-238
-
-
Elson, J.L.1
Turnbull, D.M.2
Howell, N.3
-
14
-
-
0037423543
-
Biological identifications through DNA barcodes
-
Hebert P.D.N., Cywinska A., and Ball S.L. Biological identifications through DNA barcodes. Proc. Biol. Sci. 270 1512 (2003) 313-321
-
(2003)
Proc. Biol. Sci.
, vol.270
, Issue.1512
, pp. 313-321
-
-
Hebert, P.D.N.1
Cywinska, A.2
Ball, S.L.3
-
15
-
-
32244434954
-
DNA barcodes distinguish species of tropical Lepidoptera
-
Hajibabaei M., Janzen D.H., Burns J.M., Hallwachs W., and Hebert P.D.N. DNA barcodes distinguish species of tropical Lepidoptera. Proc. Natl. Acad. Sci. U. S. A. 103 4 (2006) 968-971
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, Issue.4
, pp. 968-971
-
-
Hajibabaei, M.1
Janzen, D.H.2
Burns, J.M.3
Hallwachs, W.4
Hebert, P.D.N.5
-
16
-
-
0042531561
-
Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species
-
Hebert P.D.N., Ratnasingham S., and deWaard J.R. Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. Lond., B 270 (2003) S596-S599
-
(2003)
Proc. R. Soc. Lond., B
, vol.270
-
-
Hebert, P.D.N.1
Ratnasingham, S.2
deWaard, J.R.3
-
17
-
-
33645782783
-
Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications
-
Saunders G.W. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philos. Trans. R. Soc. Lond., B Biol. Sci. 360 (2005) 1879-1888
-
(2005)
Philos. Trans. R. Soc. Lond., B Biol. Sci.
, vol.360
, pp. 1879-1888
-
-
Saunders, G.W.1
-
18
-
-
20444366492
-
Use of DNA barcodes to identify flowering plants
-
Kress W.J., Wurdack K.J., Zimmer E.A., Weigt L.A., and Janzen D.H. Use of DNA barcodes to identify flowering plants. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 8369-8374
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 8369-8374
-
-
Kress, W.J.1
Wurdack, K.J.2
Zimmer, E.A.3
Weigt, L.A.4
Janzen, D.H.5
-
19
-
-
0036613509
-
Age distribution of human gene families shows significant roles of both large- and small-scale duplication in vertebrate evolution
-
Gu X., Wang Y., and Gu J. Age distribution of human gene families shows significant roles of both large- and small-scale duplication in vertebrate evolution. Nat. Genet. 31 (2002) 128-129
-
(2002)
Nat. Genet.
, vol.31
, pp. 128-129
-
-
Gu, X.1
Wang, Y.2
Gu, J.3
-
20
-
-
0038817812
-
New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes
-
Panopoulou G., Hennig S., Groth D., Krause A., Poustka A.J., Herwig R., Vingron M., and Lehrach H. New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Res. 13 (2003) 1056-1066
-
(2003)
Genome Res.
, vol.13
, pp. 1056-1066
-
-
Panopoulou, G.1
Hennig, S.2
Groth, D.3
Krause, A.4
Poustka, A.J.5
Herwig, R.6
Vingron, M.7
Lehrach, H.8
-
21
-
-
26444603772
-
Two rounds of whole genome duplication in the ancestral vertebrate
-
Dehal P., and Boore J.L. Two rounds of whole genome duplication in the ancestral vertebrate. PLoS Biol. 3 (2005) e314
-
(2005)
PLoS Biol.
, vol.3
-
-
Dehal, P.1
Boore, J.L.2
-
22
-
-
4644225074
-
Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved
-
Babenko V.N., and Krylov D.M. Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved. Nucleic Acids Res. 32 (2004) 5029-5035
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 5029-5035
-
-
Babenko, V.N.1
Krylov, D.M.2
-
23
-
-
14044256286
-
Into the heart of darkness: large-scale clustering of human non-coding DNA
-
Bejerano G., Haussler D., and Blanchette M. Into the heart of darkness: large-scale clustering of human non-coding DNA. Bioinformatics 20 Suppl. 1 (2004) I40-I48
-
(2004)
Bioinformatics
, vol.20
, Issue.SUPPL. 1
-
-
Bejerano, G.1
Haussler, D.2
Blanchette, M.3
-
24
-
-
0037202381
-
Molecular strategies in Metazoan genomic evolution
-
Saccone C., Barone P.O., D'Erchia A.M., D'Errico I., Pesole G., Sbisa E., and Tullo A. Molecular strategies in Metazoan genomic evolution. Gene 300 (2002) 195-201
-
(2002)
Gene
, vol.300
, pp. 195-201
-
-
Saccone, C.1
Barone, P.O.2
D'Erchia, A.M.3
D'Errico, I.4
Pesole, G.5
Sbisa, E.6
Tullo, A.7
-
26
-
-
0346734130
-
Organismal complexity, protein complexity, and gene duplicability
-
Yang J., Lusk R., and Li W.H. Organismal complexity, protein complexity, and gene duplicability. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 15661-15665
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 15661-15665
-
-
Yang, J.1
Lusk, R.2
Li, W.H.3
-
27
-
-
26444576847
-
Gene factories, microfunctionalization and the evolution of gene families
-
Hancock J.M. Gene factories, microfunctionalization and the evolution of gene families. Trends Genet. 21 (2005) 591-595
-
(2005)
Trends Genet.
, vol.21
, pp. 591-595
-
-
Hancock, J.M.1
-
28
-
-
26444488575
-
Expression divergence between duplicate genes
-
Li W.H., Yang J., and Gu X. Expression divergence between duplicate genes. Trends Genet. 21 (2005) 602-607
-
(2005)
Trends Genet.
, vol.21
, pp. 602-607
-
-
Li, W.H.1
Yang, J.2
Gu, X.3
-
29
-
-
4744351705
-
Developmental constraint on gene duplicability in fruit flies and nematodes
-
Yang J., and Li W.H. Developmental constraint on gene duplicability in fruit flies and nematodes. Gene 340 (2004) 237-240
-
(2004)
Gene
, vol.340
, pp. 237-240
-
-
Yang, J.1
Li, W.H.2
-
30
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M., and Conery J.S. The evolutionary fate and consequences of duplicate genes. Science 290 (2000) 1151-1155
-
(2000)
Science
, vol.290
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
31
-
-
23644436668
-
Evolution of nuclearly encoded mt genes in Metazoa
-
De Grassi A., Caggese C., D'Elia D., Lanave C., Pesole G., and Saccone C. Evolution of nuclearly encoded mt genes in Metazoa. Gene 354 (2005) 181-188
-
(2005)
Gene
, vol.354
, pp. 181-188
-
-
De Grassi, A.1
Caggese, C.2
D'Elia, D.3
Lanave, C.4
Pesole, G.5
Saccone, C.6
-
32
-
-
1242274629
-
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
-
Vandepoele K., De Vos W., Taylor J.S., Meyer A., and Van de Peer Y. Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 1638-1643
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 1638-1643
-
-
Vandepoele, K.1
De Vos, W.2
Taylor, J.S.3
Meyer, A.4
Van de Peer, Y.5
-
33
-
-
2442707716
-
Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes
-
Christoffels A., Koh E.G., Chia J.M., Brenner S., Aparicio S., and Venkatesh B. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol. Biol. Evol. 21 (2004) 1146-1151
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1146-1151
-
-
Christoffels, A.1
Koh, E.G.2
Chia, J.M.3
Brenner, S.4
Aparicio, S.5
Venkatesh, B.6
-
34
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Hillier L.W., et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432 (2004) 695-716
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
Hillier, L.W.1
-
35
-
-
0036008552
-
Exploring the etiology of haploinsufficiency
-
Veitia R.A. Exploring the etiology of haploinsufficiency. Bioessays 24 (2002) 175-184
-
(2002)
Bioessays
, vol.24
, pp. 175-184
-
-
Veitia, R.A.1
-
36
-
-
23644456951
-
Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster. Drosophila pseudoobscura and Anopheles gambiae
-
Tripoli G., D'Elia D., Barsanti P., and Maggese C. Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster. Drosophila pseudoobscura and Anopheles gambiae. Genome Biol. 6 (2005) R11
-
(2005)
Genome Biol.
, vol.6
-
-
Tripoli, G.1
D'Elia, D.2
Barsanti, P.3
Maggese, C.4
-
37
-
-
33645761448
-
Evolution of ATP synthase subunit c and cytochrome c gene families in selected Metazoan classes
-
De Grassi A., Lanave C., and Saccone C. Evolution of ATP synthase subunit c and cytochrome c gene families in selected Metazoan classes. Gene 371 (2006) 224-233
-
(2006)
Gene
, vol.371
, pp. 224-233
-
-
De Grassi, A.1
Lanave, C.2
Saccone, C.3
-
38
-
-
0141652962
-
The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
-
Zhang Z., and Gerstein M. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 312 (2003) 61-72
-
(2003)
Gene
, vol.312
, pp. 61-72
-
-
Zhang, Z.1
Gerstein, M.2
-
39
-
-
0031041325
-
Gene expression of subunit c(P1), subunit c(P2), and oligomycin sensitivity-conferring protein may play a key role in biogenesis of H+-ATP synthase in various rat tissues
-
Sangawa H., Himeda T., Shibata H., and Higuti T. Gene expression of subunit c(P1), subunit c(P2), and oligomycin sensitivity-conferring protein may play a key role in biogenesis of H+-ATP synthase in various rat tissues. J. Biol. Chem. 272 (1997) 6034-6037
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 6034-6037
-
-
Sangawa, H.1
Himeda, T.2
Shibata, H.3
Higuti, T.4
-
40
-
-
0038115063
-
Organizing axes in time and space; 25 years of colinear tinkering
-
Kmita M., and Duboule D. Organizing axes in time and space; 25 years of colinear tinkering. Science 301 (2003) 331-333
-
(2003)
Science
, vol.301
, pp. 331-333
-
-
Kmita, M.1
Duboule, D.2
-
41
-
-
22144452139
-
Hox clusters as models for vertebrate genome evolution
-
Hoegg S., and Meyer A. Hox clusters as models for vertebrate genome evolution. Trends Genet. 21 (2005) 421-424
-
(2005)
Trends Genet.
, vol.21
, pp. 421-424
-
-
Hoegg, S.1
Meyer, A.2
-
42
-
-
17444385984
-
Tracing the evolution of a large protein complex in the eukaryotes, NADH: ubiquinone oxidoreductase (Complex I)
-
Gabaldon T., Rainey D., and Huynen M.A. Tracing the evolution of a large protein complex in the eukaryotes, NADH: ubiquinone oxidoreductase (Complex I). J. Mol. Biol. 348 (2005) 857-870
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 857-870
-
-
Gabaldon, T.1
Rainey, D.2
Huynen, M.A.3
|