Applying DNA barcoding to red macroalgae: A preliminary appraisal holds promise for future applications

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 360, Issue 1462, 2005, Pages 1879-1888

  Saunders, Gary W ^a  

^a UNIVERSITY OF NEW BRUNSWICK   (Canada)

Author keywords

Cox1; Cryptic species; DNA barcode; Florideophyceae; Mitochondrial DNA; Rhodophyta

Indexed keywords

ANATOMY; COMPARATIVE STUDY; CONVERGENCE; DNA; FUTURE PROSPECT; GENE EXPRESSION; GENOME; LABORATORY METHOD; MORPHOLOGY; PHENOTYPIC PLASTICITY; POLYMERASE CHAIN REACTION; POPULATION DISTRIBUTION; RED ALGA; TAXONOMY;

ALGAE; ASTEROMENIA PELTATA; DILSEA; MAZZAELLA; NEODILSEA; RHODOPHYTA;

CYTOCHROME C OXIDASE; DNA; PRIMER DNA;

ARTICLE; BIODIVERSITY; CLUSTER ANALYSIS; COMPARATIVE STUDY; CYTOLOGY; DIAGNOSTIC PROCEDURE; DNA SEQUENCE; GENETICS; INFORMATION PROCESSING; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; RED ALGA; SEA; SPECIES DIFFERENCE;

ALGAE, RED; AUTOMATIC DATA PROCESSING; BASE SEQUENCE; BIODIVERSITY; CLUSTER ANALYSIS; DNA; DNA PRIMERS; ELECTRON TRANSPORT COMPLEX IV; MOLECULAR DIAGNOSTIC TECHNIQUES; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 33645782783     PISSN: 09628436     EISSN: None     Source Type: Journal    
DOI: 10.1098/rstb.2005.1719     Document Type: Article

References (23)

1. Barkman, T. J., Chenery, G., McNeal, J. R., Lyons-Weiler, J., Ellisens, W. J., Moore, G., Wolfe, A. D. & dePamphilis, C. W. 2000 Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. Proc. Natl Acad. Sci. USA 97, 13166-13171. (doi:10.1073/pnas.220427497.)
2. Chase, M. W., Salamin, N., Wilkinson, M., Dunwell, J. M., Kesanakurthi, R. P., Haidar, N. & Savolainen, V. 2005 Land plants and DNA barcodes: short-term and long-term goals. Phil. Trans. R. Soc. B 360, 1889-1895. (doi:10.1098/rstb.2005.1720.)
3. Gabrielson, P. W., Widdowson, T. B., Lindstrom, S. C., Hawkes, M. W. & Scagel, R. F. 2000 Keys to the benthic marine algae and seagrasses of British Columbia, southeast Alaska, Washington and Oregon. Vancouver: University of British Columbia, Department of Botany (Phycological contributions).
4. Harper, J. T. & Saunders, G. W. 2001 The application of sequences of the ribosomal cistron to the systematics and classification of the florideophyte red algae (Florideophyceae Rhodophyta). Cah. Biol. Mar. 42, 25-38.
5. Hawkes, M. W. & Scagel, R. F. 1986 The marine algae of British Columbia and northern Washington: division Rhodophyta (red algae), class Rhodophyceae, order Rhodymeniales. Can. J. Bot. 64, 1549-1580.
6. Hebert, P. D. N., Cywinska, A., Ball, S. L. & deWaard, J. R. 2003a Biological identifications through DNA barcodes. Proc. R. Soc. B 270, 313-322. (doi:10.1098/rspb.2002.2218.)
7. Hebert, P. D. N., Ratnasingham, S. & deWaard, J. R. 2003b Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. B 270, S96-S99. (doi:10.1098/rspb.2002.2218.)
8. Hommersand, M. H., Fredericq, S. & Freshwater, D. W. 1994 Phylogenetic systematics and biogeography of the Gigartinaceae (Gigartinales Rhodophyta) based on sequence-analysis of rbcL. Bot. Mar. 37, 193-203.
9. Hommersand, M. H., Fredericq, S., Freshwater, D. W. & Hughey, J. 1999 Recent developments in the systematics of the Gigartinaceae (Gigartinales Rhodophyta) based on rbcL sequence analysis and morphological evidence. Phycol. Res. 47, 139-151. (doi:10.1046/j.1440-1835.1999.00168.x.)
10. Hughey, J. R., Silva, P. C. & Hommersand, M. H. 2001 Solving taxonomic and nomenclatural problems in Pacific Gigartinaceae (Rhodophyta) using DNA from type material. J. Phycol. 37, 1091-1109. (doi:10.1046/j.l529-8817. 2001.01048.x.)
11. Huisman, J. M. & Millar, A. J. K. 1996 Asteromenia (Rhodymeniaceae Rhodymeniales), a new red algal genus based on Fauchea peltata. J. Phycol. 32, 138-145. (doi:10.1111/j.0022-3646.1996.00138.x.)
12. Lindstrom, S. C. 1994 Dilsea and Neodilsea. In Biology of economic algae (ed. I. Akatsuka), pp. 77-94. The Hague, The Netherlands: SPB Academic Publishing bv.
13. Lindstrom, S. C. & Scagel, R. F. 1987 The marine algae of British Columbia, northern Washington, and southeast Alaska-division Rhodophyta (red algae), class Rhodophyceae, order Gigartinales, family Dumontiaceae, with an introduction to the order Gigartinales. Can. J. Bot. 65, 2202-2232.
14. Maddison, W. & Maddison, D. 2003 MacClade, v. 4.06. Sunderland, MA: Sinauer Associates.
15. Ross, P. J., Donaldson, S. L. & Saunders, G. W. 2003 A molecular investigation of Mazzaella (Gigartinales Rhodophyta) morphologically intermediate between Mazzaella linearis and M. splendens. Bot. Mar. 46, 202-213. (doi:10.1515/BOT.2003.020.)
16. Saunders, G. W. 1993 Gel purification of red algal genomic DNA: an inexpensive and rapid method for the isolation of polymerase chain reaction-friendly DNA. J. Phycol. 29, 251-254. (doi:10.1111/j.0022-3646.1993. 00251.x.)
17. Saunders, G. W., Lehmkuhl, K. V. In press. Molecular divergence and morphological diversity among four cryptic species of Plocamium (Plocamiaceae, Florideophyceae) in northern Europe. Eur. J. Phycol.
18. Saunders, G. W., Strachan, I. M. & Kraft, G. T. 1999 The families of the order Rhodymeniales (Rhodophyta): a molecular-systematic investigation with a description of Faucheaceae fam. Phycologia 38, 23-40.
19. Shaughnessy, F. J. 1996 Identification and microgeographic distribution of Mazzaella splendens and Mazzaella linearis (Gigartinaceae Rhodophyta). Can. J. Bot. 74, 999-1008.
20. Shaughnessy, F. J. & DeWreede, R. E. 2001 Size, survival and the potential for reproduction in transplants of Mazzaella splendens and M. linearis (Rhodophyta). Mar. Ecol. Prog. Ser. 222, 109-118.
21. Shaughnessy, F. J., DeWreede, R. E. & Bell, E. C. 1996 Consequences of morphology and tissue strength to blade survivorship of two closely related Rhodophyta species. Mar. Ecol. Prog. Ser. 136, 257-266.
22. Swofford, D L. 2002. PAUP*. Phylogenetic analysis using parsimony (* and other methods), v. 4.0b10 PPC. Sunderland, MA: Sinauer Associates.
23. Tai, V., Lindstrom, S. C. & Saunders, G. W. 2001 Phylogeny of the Dumontiaceae (Gigartinales Rhodophyta) and associated families based on SSU rDNA and internal transcribed spacer sequence data. J. Phycol. 37, 184-196. (doi:10.1046/j.1529-8817.2001.037001184.x.)