-
1
-
-
0033603541
-
Early animal evolution: Emerging views from comparative biology and geology
-
Knoll,A.H. and Carroll,S.B. (1999) Early animal evolution: emerging views from comparative biology and geology. Science, 284, 2129-2137.
-
(1999)
Science
, vol.284
, pp. 2129-2137
-
-
Knoll, A.H.1
Carroll, S.B.2
-
2
-
-
0034712855
-
The Cambrian "explosion": Slow-fuse or megatonnage?
-
Conway Morris,S. (2000) The Cambrian "explosion": slow-fuse or megatonnage? Proc. Natl Acad. Sci. USA, 97, 4426-4429.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 4426-4429
-
-
Conway Morris, S.1
-
3
-
-
0030696044
-
Determining divergence times with a protein clock: Update and reevaluation
-
Doolittle,R.F., Cho,G. and Feng,D.F. (1997) Determining divergence times with a protein clock: update and reevaluation. Proc. Natl Acad. Sci. USA, 94, 13028-13033.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 13028-13033
-
-
Doolittle, R.F.1
Cho, G.2
Feng, D.F.3
-
4
-
-
0033593549
-
Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi
-
Wang,D.Y., Kumar,S. and Hedges,S.B. (1999) Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi. Proc R Soc Lond., B, Biol Sci, 266, 163-171.
-
(1999)
Proc. R. Soc. Lond., B. Biol. Sci.
, vol.266
, pp. 163-171
-
-
Wang, D.Y.1
Kumar, S.2
Hedges, S.B.3
-
5
-
-
0034701836
-
Can fast early rates reconcile molecular dates with the Cambrian explosion?
-
Hendy,M.D. and Bromham,L.D. (2000) Can fast early rates reconcile molecular dates with the Cambrian explosion? Proc. R. Soc. Lond., B, Biol. Sci., 267, 1041-1047.
-
(2000)
Proc. R. Soc. Lond., B. Biol. Sci.
, vol.267
, pp. 1041-1047
-
-
Hendy, M.D.1
Bromham, L.D.2
-
6
-
-
0347356457
-
Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa
-
Aris-Brosou,S. and Yang,Z. (2003) Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa. Mol. Biol. Evol., 20, 1947-1954.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 1947-1954
-
-
Aris-Brosou, S.1
Yang, Z.2
-
7
-
-
0006378890
-
-
Ingram,V.M. (1961) Nature, 189, 704-708.
-
(1961)
Nature
, vol.189
, pp. 704-708
-
-
Ingram, V.M.1
-
9
-
-
0017323923
-
Biochemical evolution
-
Wilson,A.C., Carlson,S.S. and White,T.J. (1977) Biochemical evolution. Annu. Rev. Biochem., 46, 573-639.
-
(1977)
Annu. Rev. Biochem.
, vol.46
, pp. 573-639
-
-
Wilson, A.C.1
Carlson, S.S.2
White, T.J.3
-
11
-
-
0032940522
-
Origin of neuronal-like receptors in Metazoa: Cloning of a metabotropic glutamate/GABA-like receptor from the marine sponge Geodia cydonium
-
Perovic,S., Krasko,A., Prokic,I., Muller,I.M. and Muller,W.E. (1999) Origin of neuronal-like receptors in Metazoa: cloning of a metabotropic glutamate/GABA-like receptor from the marine sponge Geodia cydonium. Cell Tissue Res., 296, 395-404.
-
(1999)
Cell Tissue Res.
, vol.296
, pp. 395-404
-
-
Perovic, S.1
Krasko, A.2
Prokic, I.3
Muller, I.M.4
Muller, W.E.5
-
12
-
-
0031949312
-
Gene and domain duplication in the chordate Otx gene family: Insights from amphioxus Otx
-
Williams,N.A. and Holland,P.W. (1998) Gene and domain duplication in the chordate Otx gene family: insights from amphioxus Otx. Mol. Biol. Evol., 15, 600-607.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 600-607
-
-
Williams, N.A.1
Holland, P.W.2
-
13
-
-
0032998405
-
Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split
-
Ono,K., Suga,H., Iwabe,N., Kuma,K. and Miyata,T. (1999) Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split. J. Mol. Evol., 48, 654-662.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 654-662
-
-
Ono, K.1
Suga, H.2
Iwabe, N.3
Kuma, K.4
Miyata, T.5
-
14
-
-
22444453659
-
Changing patterns of gene regulation in the evolution of arthropod morphology
-
Nagy,L. (1998) Changing patterns of gene regulation in the evolution of arthropod morphology. Am. Zool., 38, 818-828.
-
(1998)
Am. Zool.
, vol.38
, pp. 818-828
-
-
Nagy, L.1
-
15
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
Tatusov,R.L., Fedorova,N.D., Jackson,J.D., Jacobs,A.R., Kiryutin,B., Koonin,E.V., Krylov,D.M., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N. et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics, 4, 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
-
16
-
-
16444381885
-
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
-
Koonin,E.V., Fedorova,N.D., Jackson,J,D., Jacobs,A.R., Krylov,D.M., Makarova,K.S., Mazumder,R., Mekhedov,S.L., Nikolskaya,A.N., Rao,B.S. et al. (2004) A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes. Genome Biol., 5, R7.
-
(2004)
Genome Biol.
, vol.5
-
-
Koonin, E.V.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Krylov, D.M.5
Makarova, K.S.6
Mazumder, R.7
Mekhedov, S.L.8
Nikolskaya, A.N.9
Rao, B.S.10
-
17
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch,W.M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
-
(1970)
Syst. Zool.
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
19
-
-
0030660580
-
Gene families: The taxonomy of protein paralogs and chimeras
-
Henikoff,S., Greene,E.A., Pietrokovski,S., Bork,P., Attwood,T.K. and Hood,L. (1997) Gene families: the taxonomy of protein paralogs and chimeras. Science, 278, 609-614.
-
(1997)
Science
, vol.278
, pp. 609-614
-
-
Henikoff, S.1
Greene, E.A.2
Pietrokovski, S.3
Bork, P.4
Attwood, T.K.5
Hood, L.6
-
20
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
21
-
-
0036889686
-
Orthology, paralogy and proposed classification for paralog subtypes
-
Sonnhammer,E.L. and Koonin,E.V. (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet., 18, 619-620.
-
(2002)
Trends Genet.
, vol.18
, pp. 619-620
-
-
Sonnhammer, E.L.1
Koonin, E.V.2
-
22
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
23
-
-
9144257886
-
The Pfam protein families database
-
(Database issue)
-
Bateman,A., Coin,L., Durbin,R., Finn,R.D., Hollich,V., Griffiths-Jones,S., Khanna,A., Marshall,M., Moxon,S., Sonnhammer,E.L. et al. (2004) The Pfam protein families database. Nucleic Acids Res., 32 (Database issue), D138-141.
-
(2004)
Nucleic Acids Res.
, vol.32
-
-
Bateman, A.1
Coin, L.2
Durbin, R.3
Finn, R.D.4
Hollich, V.5
Griffiths-Jones, S.6
Khanna, A.7
Marshall, M.8
Moxon, S.9
Sonnhammer, E.L.10
-
24
-
-
0028304908
-
On global sequence alignment
-
Huang,X. (1994) On global sequence alignment. Comput. Appl. Biosci., 10, 227-235.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 227-235
-
-
Huang, X.1
-
25
-
-
0029901637
-
Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
-
Felsenstein,J. (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Meth. Enzymol., 266, 418-427.
-
(1996)
Meth. Enzymol.
, vol.266
, pp. 418-427
-
-
Felsenstein, J.1
-
26
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich,J.E., Block,D., Boulez,K., Brenner,S.E., Chervitz,S.A., Dagdigian,C., Fuellen,G., Gilbert,J.G., Korf,I., Lapp,H. et al. (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res., 12, 1611-1618.
-
(2002)
Genome Res.
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
Brenner, S.E.4
Chervitz, S.A.5
Dagdigian, C.6
Fuellen, G.7
Gilbert, J.G.8
Korf, I.9
Lapp, H.10
-
27
-
-
0142124263
-
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
-
Krylov,D.M., Wolf,Y.I., Rogozin,I.B. and Koonin,E.V. (2003) Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res., 13, 2229-2235.
-
(2003)
Genome Res.
, vol.13
, pp. 2229-2235
-
-
Krylov, D.M.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
28
-
-
0030683599
-
PAML: A program package for phylogenetic analysis by maximum likelihood
-
Yang,Z. (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci., 13, 555-556.
-
(1997)
Comput. Appl. Biosci.
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
29
-
-
0036078078
-
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
-
Jordan,I.K., Rogozin,I.B., Wolf,Y.I. and Koonin,E.V. (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res., 12, 962-968.
-
(2002)
Genome Res.
, vol.12
, pp. 962-968
-
-
Jordan, I.K.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
30
-
-
0034633626
-
Lineage-specific loss and divergence of functionally linked genes in eukaryotes
-
Aravind,L., Watanabe,H., Lipman,D.J. and Koonin,E.V. (2000) Lineage-specific loss and divergence of functionally linked genes in eukaryotes. Proc. Natl Acad. Sci. USA, 97, 11319-11324.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 11319-11324
-
-
Aravind, L.1
Watanabe, H.2
Lipman, D.J.3
Koonin, E.V.4
-
31
-
-
0027384944
-
A method for calibrating molecular clocks and its application to animal mitochondrial DNA
-
Lynch,M. and Jarrell,P.E. (1993) A method for calibrating molecular clocks and its application to animal mitochondrial DNA. Genetics, 135, 1197-1208.
-
(1993)
Genetics
, vol.135
, pp. 1197-1208
-
-
Lynch, M.1
Jarrell, P.E.2
|