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Volumn 32, Issue 17, 2004, Pages 5029-5035

Comparative analysis of complete genomes reveals gene loss, acquisition and acceleration of evolutionary rates in Metazoa, suggests a prevalence of evolution via gene acquisition and indicates that the evolutionary rates in animals tend to be conserved

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; FUNGAL PROTEIN; PROTEOME; VEGETABLE PROTEIN; PROTEIN;

EID: 4644225074     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh833     Document Type: Article
Times cited : (14)

References (31)
  • 1
    • 0033603541 scopus 로고    scopus 로고
    • Early animal evolution: Emerging views from comparative biology and geology
    • Knoll,A.H. and Carroll,S.B. (1999) Early animal evolution: emerging views from comparative biology and geology. Science, 284, 2129-2137.
    • (1999) Science , vol.284 , pp. 2129-2137
    • Knoll, A.H.1    Carroll, S.B.2
  • 2
    • 0034712855 scopus 로고    scopus 로고
    • The Cambrian "explosion": Slow-fuse or megatonnage?
    • Conway Morris,S. (2000) The Cambrian "explosion": slow-fuse or megatonnage? Proc. Natl Acad. Sci. USA, 97, 4426-4429.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 4426-4429
    • Conway Morris, S.1
  • 3
    • 0030696044 scopus 로고    scopus 로고
    • Determining divergence times with a protein clock: Update and reevaluation
    • Doolittle,R.F., Cho,G. and Feng,D.F. (1997) Determining divergence times with a protein clock: update and reevaluation. Proc. Natl Acad. Sci. USA, 94, 13028-13033.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 13028-13033
    • Doolittle, R.F.1    Cho, G.2    Feng, D.F.3
  • 4
    • 0033593549 scopus 로고    scopus 로고
    • Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi
    • Wang,D.Y., Kumar,S. and Hedges,S.B. (1999) Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi. Proc R Soc Lond., B, Biol Sci, 266, 163-171.
    • (1999) Proc. R. Soc. Lond., B. Biol. Sci. , vol.266 , pp. 163-171
    • Wang, D.Y.1    Kumar, S.2    Hedges, S.B.3
  • 5
    • 0034701836 scopus 로고    scopus 로고
    • Can fast early rates reconcile molecular dates with the Cambrian explosion?
    • Hendy,M.D. and Bromham,L.D. (2000) Can fast early rates reconcile molecular dates with the Cambrian explosion? Proc. R. Soc. Lond., B, Biol. Sci., 267, 1041-1047.
    • (2000) Proc. R. Soc. Lond., B. Biol. Sci. , vol.267 , pp. 1041-1047
    • Hendy, M.D.1    Bromham, L.D.2
  • 6
    • 0347356457 scopus 로고    scopus 로고
    • Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa
    • Aris-Brosou,S. and Yang,Z. (2003) Bayesian models of episodic evolution support a late precambrian explosive diversification of the Metazoa. Mol. Biol. Evol., 20, 1947-1954.
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1947-1954
    • Aris-Brosou, S.1    Yang, Z.2
  • 7
    • 0006378890 scopus 로고
    • Ingram,V.M. (1961) Nature, 189, 704-708.
    • (1961) Nature , vol.189 , pp. 704-708
    • Ingram, V.M.1
  • 11
    • 0032940522 scopus 로고    scopus 로고
    • Origin of neuronal-like receptors in Metazoa: Cloning of a metabotropic glutamate/GABA-like receptor from the marine sponge Geodia cydonium
    • Perovic,S., Krasko,A., Prokic,I., Muller,I.M. and Muller,W.E. (1999) Origin of neuronal-like receptors in Metazoa: cloning of a metabotropic glutamate/GABA-like receptor from the marine sponge Geodia cydonium. Cell Tissue Res., 296, 395-404.
    • (1999) Cell Tissue Res. , vol.296 , pp. 395-404
    • Perovic, S.1    Krasko, A.2    Prokic, I.3    Muller, I.M.4    Muller, W.E.5
  • 12
    • 0031949312 scopus 로고    scopus 로고
    • Gene and domain duplication in the chordate Otx gene family: Insights from amphioxus Otx
    • Williams,N.A. and Holland,P.W. (1998) Gene and domain duplication in the chordate Otx gene family: insights from amphioxus Otx. Mol. Biol. Evol., 15, 600-607.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 600-607
    • Williams, N.A.1    Holland, P.W.2
  • 13
    • 0032998405 scopus 로고    scopus 로고
    • Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split
    • Ono,K., Suga,H., Iwabe,N., Kuma,K. and Miyata,T. (1999) Multiple protein tyrosine phosphatases in sponges and explosive gene duplication in the early evolution of animals before the parazoan-eumetazoan split. J. Mol. Evol., 48, 654-662.
    • (1999) J. Mol. Evol. , vol.48 , pp. 654-662
    • Ono, K.1    Suga, H.2    Iwabe, N.3    Kuma, K.4    Miyata, T.5
  • 14
    • 22444453659 scopus 로고    scopus 로고
    • Changing patterns of gene regulation in the evolution of arthropod morphology
    • Nagy,L. (1998) Changing patterns of gene regulation in the evolution of arthropod morphology. Am. Zool., 38, 818-828.
    • (1998) Am. Zool. , vol.38 , pp. 818-828
    • Nagy, L.1
  • 17
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch,W.M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
    • (1970) Syst. Zool. , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 20
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov,R.L., Koonin,E.V. and Lipman,D.J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 21
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer,E.L. and Koonin,E.V. (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet., 18, 619-620.
    • (2002) Trends Genet. , vol.18 , pp. 619-620
    • Sonnhammer, E.L.1    Koonin, E.V.2
  • 24
    • 0028304908 scopus 로고
    • On global sequence alignment
    • Huang,X. (1994) On global sequence alignment. Comput. Appl. Biosci., 10, 227-235.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 227-235
    • Huang, X.1
  • 25
    • 0029901637 scopus 로고    scopus 로고
    • Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods
    • Felsenstein,J. (1996) Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. Meth. Enzymol., 266, 418-427.
    • (1996) Meth. Enzymol. , vol.266 , pp. 418-427
    • Felsenstein, J.1
  • 27
    • 0142124263 scopus 로고    scopus 로고
    • Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution
    • Krylov,D.M., Wolf,Y.I., Rogozin,I.B. and Koonin,E.V. (2003) Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution. Genome Res., 13, 2229-2235.
    • (2003) Genome Res. , vol.13 , pp. 2229-2235
    • Krylov, D.M.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 28
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang,Z. (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Comput. Appl. Biosci., 13, 555-556.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 555-556
    • Yang, Z.1
  • 29
    • 0036078078 scopus 로고    scopus 로고
    • Essential genes are more evolutionarily conserved than are nonessential genes in bacteria
    • Jordan,I.K., Rogozin,I.B., Wolf,Y.I. and Koonin,E.V. (2002) Essential genes are more evolutionarily conserved than are nonessential genes in bacteria. Genome Res., 12, 962-968.
    • (2002) Genome Res. , vol.12 , pp. 962-968
    • Jordan, I.K.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 30
    • 0034633626 scopus 로고    scopus 로고
    • Lineage-specific loss and divergence of functionally linked genes in eukaryotes
    • Aravind,L., Watanabe,H., Lipman,D.J. and Koonin,E.V. (2000) Lineage-specific loss and divergence of functionally linked genes in eukaryotes. Proc. Natl Acad. Sci. USA, 97, 11319-11324.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 11319-11324
    • Aravind, L.1    Watanabe, H.2    Lipman, D.J.3    Koonin, E.V.4
  • 31
    • 0027384944 scopus 로고
    • A method for calibrating molecular clocks and its application to animal mitochondrial DNA
    • Lynch,M. and Jarrell,P.E. (1993) A method for calibrating molecular clocks and its application to animal mitochondrial DNA. Genetics, 135, 1197-1208.
    • (1993) Genetics , vol.135 , pp. 1197-1208
    • Lynch, M.1    Jarrell, P.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.