메뉴 건너뛰기




Volumn 371, Issue 2, 2006, Pages 224-233

Evolution of ATP synthase subunit c and cytochrome c gene families in selected Metazoan classes

Author keywords

ATP synthase subunit c; Bayesian inference; Cytochrome c; Gene families; Mitochondrion; Oxidative phosphorylation

Indexed keywords

CYTOCHROME C; LIPID BINDING PROTEIN; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE;

EID: 33645761448     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.11.022     Document Type: Article
Times cited : (22)

References (38)
  • 1
    • 0033981085 scopus 로고    scopus 로고
    • Structure and function of the F(o) complex of the ATP synthase from Escherichia coli
    • Altendorf K., Stalz W., Greie J., and Deckers-Hebestreit G. Structure and function of the F(o) complex of the ATP synthase from Escherichia coli. J. Exp. Biol. 203 Pt1 (2000) 19-28
    • (2000) J. Exp. Biol. , vol.203 , Issue.Pt1 , pp. 19-28
    • Altendorf, K.1    Stalz, W.2    Greie, J.3    Deckers-Hebestreit, G.4
  • 2
    • 0030891066 scopus 로고    scopus 로고
    • ATP synthase subunit c expression: physiological regulation of the P1 and P2 genes
    • Andersson U., Houstek J., and Cannon B. ATP synthase subunit c expression: physiological regulation of the P1 and P2 genes. Biochem. J. 323 Pt2 (1997) 379-385
    • (1997) Biochem. J. , vol.323 , Issue.Pt2 , pp. 379-385
    • Andersson, U.1    Houstek, J.2    Cannon, B.3
  • 3
    • 0025219623 scopus 로고
    • Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins
    • Biel S.W., and Biel A.J. Isolation of a Rhodobacter capsulatus mutant that lacks c-type cytochromes and excretes porphyrins. J. Bacteriol. 172 (1990) 1321-1326
    • (1990) J. Bacteriol. , vol.172 , pp. 1321-1326
    • Biel, S.W.1    Biel, A.J.2
  • 4
  • 5
    • 4143130167 scopus 로고    scopus 로고
    • Rotor/stator interactions of the epsilon subunit in Escherichia coli ATP synthase and implications for enzyme regulation
    • Bulygin V.V., Duncan T.M., and Cross R.L. Rotor/stator interactions of the epsilon subunit in Escherichia coli ATP synthase and implications for enzyme regulation. J. Biol. Chem. 279 34 (2004) 35616-35621
    • (2004) J. Biol. Chem. , vol.279 , Issue.34 , pp. 35616-35621
    • Bulygin, V.V.1    Duncan, T.M.2    Cross, R.L.3
  • 6
    • 0022399830 scopus 로고
    • Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family
    • Chothia C., and Lesk A.M. Helix movements and the reconstruction of the haem pocket during the evolution of the cytochrome c family. J. Mol. Biol. 182 (1985) 151-158
    • (1985) J. Mol. Biol. , vol.182 , pp. 151-158
    • Chothia, C.1    Lesk, A.M.2
  • 7
    • 85046982079 scopus 로고    scopus 로고
    • Strategies and tools for whole-genome alignments
    • Couronne O., et al. Strategies and tools for whole-genome alignments. Genome Res. 13 (2003) 7
    • (2003) Genome Res. , vol.13 , pp. 7
    • Couronne, O.1
  • 8
    • 33645787426 scopus 로고    scopus 로고
    • De Grassi, A., Caggese, C., D'Elia, D., Lanave, C., Pesole, G., Saccone., C., in press. Evolution of nuclearly encoded genes in Metazoa. Gene.
  • 9
    • 0027308236 scopus 로고
    • Sequences of members of the human gene family for the c subunit of mitochondrial ATP synthase
    • Dyer M.R., and Walker J.E. Sequences of members of the human gene family for the c subunit of mitochondrial ATP synthase. Biochem. J. 293 (1993) 51-64
    • (1993) Biochem. J. , vol.293 , pp. 51-64
    • Dyer, M.R.1    Walker, J.E.2
  • 11
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WIN, two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 (1996) 543-548
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 12
    • 0033918896 scopus 로고    scopus 로고
    • Lineage-specific evolutionary rate in mammalian mtDNA
    • Gissi C., Reyes A., Pesole G., and Saccone C. Lineage-specific evolutionary rate in mammalian mtDNA. Mol. Biol. Evol. 17 7 (2000) 1022-1031
    • (2000) Mol. Biol. Evol. , vol.17 , Issue.7 , pp. 1022-1031
    • Gissi, C.1    Reyes, A.2    Pesole, G.3    Saccone, C.4
  • 13
    • 3242875263 scopus 로고    scopus 로고
    • MITOPRED, a genome-scale method for prediction of nucleus-encoded mitochondrial proteins
    • Guda C., Fahy E., and Subramaniam S. MITOPRED, a genome-scale method for prediction of nucleus-encoded mitochondrial proteins. Bioinformatics 20 (2004) 1785-1794
    • (2004) Bioinformatics , vol.20 , pp. 1785-1794
    • Guda, C.1    Fahy, E.2    Subramaniam, S.3
  • 14
    • 0028958164 scopus 로고
    • The expression of subunit c correlates with and thus may limit the biosynthesis of the mitochondrial F0F1-ATPase in brown adipose tissue
    • Houstek J., Andersson U., Tvrdik P., Nedergaard J., and Cannon B. The expression of subunit c correlates with and thus may limit the biosynthesis of the mitochondrial F0F1-ATPase in brown adipose tissue. J. Biol. Chem. 270 13 (1995) 7689-7694
    • (1995) J. Biol. Chem. , vol.270 , Issue.13 , pp. 7689-7694
    • Houstek, J.1    Andersson, U.2    Tvrdik, P.3    Nedergaard, J.4    Cannon, B.5
  • 15
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES, Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES, Bayesian inference of phylogenetic trees. Bioinformatics 8 (2001) 754-755
    • (2001) Bioinformatics , vol.8 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 16
    • 0030741528 scopus 로고    scopus 로고
    • Cytochrome c activation of CPP32-like proteolysis plays a critical role in a Xenopus cell-free apoptosis system
    • Kluck R.M., Martin S.J., Hoffman B.M., Zhou J.S., Green D.R., and Newmeyer D.D. Cytochrome c activation of CPP32-like proteolysis plays a critical role in a Xenopus cell-free apoptosis system. EMBO J. 16 (1997) 4639-4649
    • (1997) EMBO J. , vol.16 , pp. 4639-4649
    • Kluck, R.M.1    Martin, S.J.2    Hoffman, B.M.3    Zhou, J.S.4    Green, D.R.5    Newmeyer, D.D.6
  • 17
    • 0034443285 scopus 로고    scopus 로고
    • Origin and evolution of the mitochondrial proteome
    • Kurland C.G., and Andersson S.G. Origin and evolution of the mitochondrial proteome. Microbiol. Mol. Biol. Rev. 64 4 (2000) 786-820
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , Issue.4 , pp. 786-820
    • Kurland, C.G.1    Andersson, S.G.2
  • 18
    • 0032976397 scopus 로고    scopus 로고
    • Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees
    • Larget B., and Simon D.L. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 16 (1999) 750-759
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 750-759
    • Larget, B.1    Simon, D.L.2
  • 19
    • 3242888285 scopus 로고    scopus 로고
    • rVista 2.0: evolutionary analysis of transcription factor binding sites
    • Web Server Issue
    • Loots G., and Ovcharenko I. rVista 2.0: evolutionary analysis of transcription factor binding sites. Nucleic Acids Res. 32 (2004) W217-W221. Web Server Issue
    • (2004) Nucleic Acids Res. , vol.32
    • Loots, G.1    Ovcharenko, I.2
  • 21
    • 2642689666 scopus 로고    scopus 로고
    • The hydrogen hypothesis for the first eukaryote
    • Martin W., and Muller M. The hydrogen hypothesis for the first eukaryote. Nature 392 (1998) 37-41
    • (1998) Nature , vol.392 , pp. 37-41
    • Martin, W.1    Muller, M.2
  • 22
    • 0025817077 scopus 로고
    • Cytochrome c, gene structure, homology and ancestral relationships
    • Review
    • Mills G.C. Cytochrome c, gene structure, homology and ancestral relationships. J. Theor. Biol. 152 (1991) 177-190. Review
    • (1991) J. Theor. Biol. , vol.152
    • Mills, G.C.1
  • 23
    • 16644368723 scopus 로고    scopus 로고
    • Integrative analysis of the mitochondrial proteome in yeast
    • Prokisch H., et al. Integrative analysis of the mitochondrial proteome in yeast. PLos Biol. 2 6 (2004) e160
    • (2004) PLos Biol. , vol.2 , Issue.6
    • Prokisch, H.1
  • 24
    • 0028652302 scopus 로고
    • The evolution of mitochondrial DNA
    • Saccone C. The evolution of mitochondrial DNA. Opin. Genet. Dev. 4 (1994) 875-881
    • (1994) Opin. Genet. Dev. , vol.4 , pp. 875-881
    • Saccone, C.1
  • 25
    • 0025317141 scopus 로고
    • Influence of base composition on quantitative estimates of gene evolution
    • Saccone C., Lanave C., Pesole G., and Preparata G. Influence of base composition on quantitative estimates of gene evolution. Methods Enzymol. 183 (1990) 570-583
    • (1990) Methods Enzymol. , vol.183 , pp. 570-583
    • Saccone, C.1    Lanave, C.2    Pesole, G.3    Preparata, G.4
  • 26
    • 0032860013 scopus 로고    scopus 로고
    • Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system
    • Review
    • Saccone C., De Giorgi C., Gissi C., Pesole G., and Reyes A. Evolutionary genomics in Metazoa: the mitochondrial DNA as a model system. Gene 238 (1999) 195-209. Review
    • (1999) Gene , vol.238
    • Saccone, C.1    De Giorgi, C.2    Gissi, C.3    Pesole, G.4    Reyes, A.5
  • 27
    • 0034736514 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genetic system: an overview
    • Saccone C., Gissi C., Lanave C., Larizza A., Pesole G., and Reyes A. Evolution of the mitochondrial genetic system: an overview. Gene 261 (2000) 153-159
    • (2000) Gene , vol.261 , pp. 153-159
    • Saccone, C.1    Gissi, C.2    Lanave, C.3    Larizza, A.4    Pesole, G.5    Reyes, A.6
  • 28
    • 0037029128 scopus 로고    scopus 로고
    • Mitochondrial DNA in Metazoa: degree of freedom in a frozen event
    • Saccone C., Gissi C., Reyesm A., Larizza A., Sbisa E., and Pesole G. Mitochondrial DNA in Metazoa: degree of freedom in a frozen event. Gene 286 1 (2002) 3-12
    • (2002) Gene , vol.286 , Issue.1 , pp. 3-12
    • Saccone, C.1    Gissi, C.2    Reyesm, A.3    Larizza, A.4    Sbisa, E.5    Pesole, G.6
  • 29
    • 0021683812 scopus 로고
    • Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs
    • Scarpulla R.C. Processed pseudogenes for rat cytochrome c are preferentially derived from one of three alternate mRNAs. Mol. Cell. Biol. 4 (1984) 2279-2288
    • (1984) Mol. Cell. Biol. , vol.4 , pp. 2279-2288
    • Scarpulla, R.C.1
  • 30
    • 0037036115 scopus 로고    scopus 로고
    • Nuclear activators and coactivators in mammalian mitochondrial biogenesis
    • Scarpulla R.C. Nuclear activators and coactivators in mammalian mitochondrial biogenesis. Biochim. Biophys. Acta 1576 1-2 (2002) 1-14
    • (2002) Biochim. Biophys. Acta , vol.1576 , Issue.1-2 , pp. 1-14
    • Scarpulla, R.C.1
  • 31
    • 0345687191 scopus 로고    scopus 로고
    • The proteome of Saccharomyces cerevisiae mitochondria
    • Sickmann A., et al. The proteome of Saccharomyces cerevisiae mitochondria. PNAS 100 (2003) 13207-13212
    • (2003) PNAS , vol.100 , pp. 13207-13212
    • Sickmann, A.1
  • 32
    • 0037336905 scopus 로고    scopus 로고
    • Characterization of the human heart mitochondrial proteome
    • Taylor S.W., et al. Characterization of the human heart mitochondrial proteome. Nat. Biotechnol. 21 (2003) 281-286
    • (2003) Nat. Biotechnol. , vol.21 , pp. 281-286
    • Taylor, S.W.1
  • 33
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 34
    • 23644456951 scopus 로고    scopus 로고
    • Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudobscura and Anopheles gambiae
    • Tripoli G., D'Elia D., Barsanti P., and Caggese C. Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudobscura and Anopheles gambiae. Genome Biol. 6 2 (2005) R11
    • (2005) Genome Biol. , vol.6 , Issue.2
    • Tripoli, G.1    D'Elia, D.2    Barsanti, P.3    Caggese, C.4
  • 35
    • 0036008552 scopus 로고    scopus 로고
    • Exploring the etiology of haploin sufficiency
    • Veitia R.A. Exploring the etiology of haploin sufficiency. Bioessays 24 (2002) 175-184
    • (2002) Bioessays , vol.24 , pp. 175-184
    • Veitia, R.A.1
  • 36
    • 0036866036 scopus 로고    scopus 로고
    • Mitochondrial biogenesis in brown adipose tissue is associated with differential expression of transcription regulatory factors
    • Villena J.A., et al. Mitochondrial biogenesis in brown adipose tissue is associated with differential expression of transcription regulatory factors. Cell. Mol. Life Sci. 59 11 (2002) 1934-1944
    • (2002) Cell. Mol. Life Sci. , vol.59 , Issue.11 , pp. 1934-1944
    • Villena, J.A.1
  • 38
    • 0141652962 scopus 로고    scopus 로고
    • The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse
    • Zhang Z., and Gerstein M. The human genome has 49 cytochrome c pseudogenes, including a relic of a primordial gene that still functions in mouse. Gene 312 (2003) 61-72
    • (2003) Gene , vol.312 , pp. 61-72
    • Zhang, Z.1    Gerstein, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.