Comparative analysis of the within-population genetic structure in wild cherry (Prunus avium L.) at the self-incompatibility locus and nuclear microsatellites

Molecular Ecology

Volumn 15, Issue 11, 2006, Pages 3231-3243

  Schueler, Silvio ^a,b   Tusch, Alexandra ^a   Scholz, Florian ^a  

^a Federal Research Centre for Forestry and Forest Products   (Germany)

^b FEDERAL RESEARCH AND TRAINING CENTRE FOR FORESTS   (Austria)

Author keywords

Autocorrelation; Frequency dependent selection; Gene dispersal; Isolation by distance; Kinship coefficient; Spatial genetic structure

Indexed keywords

MICROSATELLITE DNA; PLANT DNA; VEGETABLE PROTEIN;

ALLELE; ARTICLE; CHEMISTRY; COHORT ANALYSIS; GENE FLOW; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; GERMANY; POLYMERASE CHAIN REACTION; POPULATION GENETICS; PRUNUS;

ALLELES; COHORT STUDIES; DNA, PLANT; GENE FLOW; GENETICS, POPULATION; GENOTYPE; GERMANY; MICROSATELLITE REPEATS; PLANT PROTEINS; POLYMERASE CHAIN REACTION; PRUNUS; SELECTION (GENETICS); VARIATION (GENETICS);

PRUNUS; PRUNUS AVIUM;

EID: 33748626895     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.03029.x     Document Type: Article

References (77)

1. Aranzana MJ, Pineda A, Cosson P et al. (2003) A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theoretical and Applied Genetics, 106, 819-825.
2. Bechsgaard J, Bataillon T, Schierup MH (2004) Uneven segregation of sporophytic self-incompatibility alleles in Arabidopsis lyrata. Journal of Evolutionary Biology, 17, 554-561.
3. Bošković R, Tobutt KR (1996) Correlation of stylar ribonuclease zymograms with incompatibility alleles in sweet cherry. Euphytica, 90, 245-250.
4. Boucher W (1993) A deterministic analysis of the self-incompatibility alleles. Journal of Mathematical Biology, 31, 149-155.
5. Boyce WM, Hedrick PW, Muggli-Cockett NE, Kalinowski S, Penedo MCT, Ramey RR (1997) Genetic variation of major histocompatibility complex and microsatellite loci: a comparison in bighorn sheep. Genetics, 145, 421-433.
6. Brennan HS, Harris SA, Hiscock SJ (2003) Population genetics of sporophytic self-incompatibility in Senecio squalidus L. (Asteraceae) II: a spatial autocorrelation approach to determining mating behaviour in the presence of low S-allele diversity. Heredity, 91, 502-509.
7. Brooks RJ, Tobias AM, Lawrence MJ (1996) The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. 11. The effects of limited pollen and seed dispersal, overlapping generations and variation in plant size on the variance of S-allele frequencies in populations at equilibrium. Heredity, 76, 367-376.
8. Campbell JM, Lawrence MJ (1981) The population genetics of the self-incompatibility polymorphism in Papaver rhoeas. 1. The number and distribution of S-alleles in families from three localities. Heredity, 46, 69-79.
9. Castric V, Vekemans X (2004) Plant self-incompatibility in natural populations: a critical assessment of recent theoretical and empirical advances. Molecular Ecology, 13, 2873-2889.
10. Chung MY, Epperson BK, Chung MG (2003) Genetic structure of age classes in Camellia japonica (Theaceae). Evolution, 57, 62-73.
11. Cipriani G, Lot G, Huang WG, Marrazzo MT, Peterlunger E, Testolin R (1999) AC/GT and AG/CT microsatellite repeats in peach [Prunus persica (L.) Batsch]: isolation, characterization and cross-species amplification in Prunus. Theoretical and Applied Genetics, 99, 65-72.
12. De Cuyper B, Sonneveld S, Tobutt KR (2005) Determining self-incompatibility genotypes in Belgian wild cherries. Molecular Ecology, 14, 945-955.
13. De Nettancourt D (2001) Incompatibility and Incongruity in Wild and Cultivated Plants. Springer, Berlin.
14. Dettori MT, Quarta R, Verde I (2001) A peach linkage map integrating RFLPs, SSRs, RAPDs, and morphological markers. Genome, 44, 783-790.
15. Dirlewanger E, Cosson P, Tavaud M et al. (2002) Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theoretical and Applied Genetics, 105, 127-138.
16. Doligez A, Barila C, Jolya HI (1998) Fine-scale spatial genetic structure with nonuniform distribution of individuals. Genetics, 148, 905-920.
17. Ducci F, Santi F (1997) The distribution of clones in managed and unmanaged populations of wild cherry (Prunus avium). Canadian Journal of Forest Research, 27, 1998-2004.
18. Dumolin S, Demesure B, Petit RJ (1995) Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theoretical and Applied Genetics, 91, 1253-1256.
19. Emerson S (1938) The genetics of self-incompatibility in Oenothera organensis. Genetics, 23, 190-202.
20. Epperson BK (2003) Geographical Genetics. Princeton University Press, Princeton, New Jersey.
21. Epperson BK (2004) Multilocus estimation of genetic structure within populations. Theoretical Population Biology, 65, 227-237.
22. Epperson BK (2005) Mutation at high rates reduces spatial genetic structure within populations. Molecular Ecology, 14, 703-710.
23. Ewens WJ (1972) The sampling theory of selectively neutral alleles. Theoretical Population Biology, 3, 87-112.
24. Fenster CB, Vekemans X, Hardy OJ (2003) Quantifying gene flow from spatial genetic structure data in a metapopulation of Chamaecrista fasciculata (Leguminosae). Evolution, 57, 995-1007.
25. Foulongne M, Pascal T, Arus P, Kervella J (2003) The potential of Prunus davidiana for introgression into peach [Prunus persica (L.) Batsch] assessed by comparative mapping. Theoretical and Applied Genetics, 107, 227-238.
26. Garrigan D, Hedrick PW (2003) Perspective: detecting adaptive molecular polymorphism: lessons from the MHC. Evolution, 57, 1707-1722.
27. Glémin S, Gaude T, Guillemin M-L, Lourmas M, Olivieri I, Mignot A (2005) Balancing selection in the wild: testing population genetics theory of self-incompatibility in the rare species Brassica insularis. Genetics, 171, 279-289.
28. Granger AR (2004) Gene flow in cherry orchards. Theoretical and Applied Genetics, 108, 497-500.
29. Hardy OJ, Vekemans X (1999) Isolation by distance in a continuous population: reconciliation between spatial autocorrelation analysis and population genetics models. Heredity, 83, 145-154.
30. Hardy OJ, Vekemans X (2001) Patterns of allozyme variation in diploid and tetraploid Centaurea jacea at different spatial scales. Evolution, 55, 943-954.
31. Hardy OJ, Vekemans X (2002) SPAGEDI: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes, 2, 618-620.
32. Heuertz M, Vekemans X, Hausman J-F, Palada M, Hardy OJ (2003) Estimating seed vs. pollen dispersal from spatial genetic structure in the common ash. Molecular Ecology, 12, 2483-2495.
33. Jarne P, Lagoda PJL (1996) Microsatellites, from molecules to populations and back. Trends in Ecology & Evolution, 11, 424-429.
34. Kachroo A, Schopfer CR, Nasrallah ME, Nasrallah JB (2001) Allele-specific receptor-ligand interactions in Brassica self-incompatibility. Science, 293, 1824-1826.
35. Kao TH, Tsukamoto T (2004) The molecular and genetic bases of S-RNase-based self-incompatibility. Plant Cell, 16, S72-S83.
36. Kobel F, Steinegger P, Anliker J (1938) Weitere Untersuchungen über die Befruchtungsverhältnisse der Kirschensorten. Landwirtschaftliches Jahrbuch der Schweiz, 52, 564-595.
37. Köhler W, Schachtel G, Voleske P (2002) Biostatistik, 3rd edn. Springer, Berlin.
38. Lawrence MJ (2000) Population genetics of the homomorphic self-incompatibility polymorphisms in flowering plants. Annals of Botany, 85, 221-226.
39. Leblois R, Estoup A, Rousset F (2003) Influence of mutational and sampling factors on the estimation of demographic parameters in a 'continuous' population under isolation by distance. Molecular Biology and Evolution, 20, 491-502.
40. Loiselle BA, Sork VL, Nason J, Graham C (1995) Spatial genetic-structure of a tropical understory shrub, Psychotria officinalis (Rubiaceae). American Journal of Botany, 82, 1420-1425.
41. Matthews P, Dow KP (1969) Incompatibility groups: sweet cherry (Prunus avium). In: Abstract Bibliography of Fruit Breeding and Genetics to 1965 Prunus (ed. Knight RL), pp. 540-544. Commonwealth Agricultural Bureaux, Farnham Royal.
42. Meagher S, Potts WK (1997) A microsatellite-based MHC genotyping system for house mice (Mus domesticus). Hereditas, 127, 75-82.
43. Muirhead CA (2001) Consequences of population structure on genes under balancing selection. Evolution, 55, 1532-1541.
44. von Oheimb G, Schmidt M, Kriebitzsch WU, Ellenberg H, Heuveldop J (2004) Ausbreitung, Etablierung, Aufwuchserfolg und Beständigkeit - Zur Dynamik von Waldgefäßpflanzenarten auf Landschaftsebene in Norddeutschland. In: Wichtige Einflußfaktoren auf die Biodiversität in Wäldern. Abschlussbericht des BMVEL-Projekts (eds Scholz F, Schueler S). Institute for World Forestry Working Paper No. 2004/2, Federal Research Centre for Forestry and Forest Products, Hamburg.
45. Richman AD, Uyenoyama MK, Kohn JR (1996) Allelic diversity and gene genealogy at the self-incompatibility locus in the Solanaceae. Science, 273, 1212-1216.
46. Ripley BD (1981) Spatial Statistics. Wiley, New York.
47. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics, 145, 1219-1228.
48. Rousset F (2000) Genetic differentiation between individuals. Journal of Evolutionary Biology, 13, 58-62.
49. Schierup MH (1998) The number of self-incompatibility alleles in a finite, subdivided population. Genetics, 149, 1153-1162.
50. Schierup MH, Vekemans X, Christiansen FB (1997) Evolutionary dynamics of sporophytic self-incompatibility alleles in plants. Genetics, 147, 835-846.
51. Schierup MH, Vekemans X, Charlesworth D (2000a) The effect of subdivision on variation at multi-allelic loci under balancing selection. Genetical Research, 76, 51-62.
52. Schierup MH, Charlesworth D, Vekemans X (2000b) The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population. Genetical Research, 76, 63-73.
53. Schneider S, Roessli D, Excoffier L (2000) ARLEQUIN, version 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
54. Schueler S (2005) Pollen-mediated gene flow of trees in the temperate zone. PhD Thesis,. University of Hamburg, Sierke-Verlag, Göttingen.
55. Schueler S, Tusch A, Schuster M, Ziegenhagen B (2003) Characterization of microsatellites in wild and sweet cherry (Prunus avium L.) - markers for individual identification and reproductive processes. Genome, 46, 95-102.
56. Sijacic P, Wang X, Skirpan AL, Wang Y, Dowd PE, McCubbin AG, Huang S, Kao TH (2004) Identification of the pollen determinant of S-RNase-mediated self-incompatibility. Nature, 429, 302-305.
57. Slatkin M, Arter HE (1991) Spatial autocorrelation methods in population-genetics. American Naturalist, 138, 499-517.
58. Smouse PE, Peakall R (1999) Spatial autocorrelation analysis of individual multiallele and multilocus genetic structure. Heredity, 82, 561-573.
59. Sokal RR, Oden NL (1978) Spatial autocorrelation in biology. 1. Methodology. Biological Journal of the Linnean Society, 10, 199-228.
60. Sokal RR, Wartenberg DE (1983) A test of spatial autocorrelation analysis using an isolation-by-distance model. Genetics, 105, 219-237.
61. Sonneveld T, Robbins TP, Boskovic R, Tobutt KR (2001) Cloning of six cherry self-incompatibility alleles and development of allele-specific PCR detection. Theoretical and Applied Genetics, 102, 1046-1055.
62. Sonneveld T, Tobutt KR, Robbins TP (2003) Allele-specific PCR detection of sweet cherry self-incompatibility (S) alleles S1 to S16 using consensus and allele-specific primers. Theoretical and Applied Genetics, 107, 1059-1070.
63. Steiner W, Gregorius H-R (1994) Single locus gametophytic incompatibility: the symmetric equilibrium is globally asymptotically stable. Journal of Mathematical Biology, 32, 515-520.
64. Stone JL (2004) Sheltered load associated with S-alleles in Solanum carolinense. Heredity, 92, 335-342.
65. Streiff R, Labbe T, Bacilieri R, Steinkellner H, Glössl J, Kremer A (1998) Within-population genetic structure in Quercus robur L. and Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Molecular Ecology, 7, 317-328.
66. Testolin R, Marrazzo T, Cipriani G et al. (2000) Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome, 43, 512-520.
67. Ushijima K, Sassa H, Tao R et al. (1998) Cloning and characterization of cDNAs encoding S-RNases from almond (Prunus dulcis): primary structural features and sequence diversity of the S-RNases in Rosaceae. Molecular and General Genetics, 260, 261-268.
68. Uyenoyama MK (1997) Genealogical structure among alleles regulating self-incompatibility in natural populations of flowering plants. Genetics, 147, 1389-1400.
69. Uyenoyama MK, Zhang Y, Newbigin E (2001) On the origin of self-incompatibility haplotypes: transition through self-compatible intermediates. Genetics, 157, 1805-1817.
70. Vekemans X, Hardy OJ (2004) New insights from fine-scale spatial genetic structure analyses in plant populations. Molecular Ecology, 13, 921-935.
71. Vekemans X, Slatkin M (1994) Gene and allelic genealogies at a gametophytic self-incompatibility locus. Genetics, 137, 1157-1165.
72. Vilanova S, Romero C, Abbott AG, Llacer G, Badenes ML (2003) An apricot (Prunus armeniaca L.) F2 progeny linkage map based on SSR and AFLP markers, mapping plum pox virus resistance and self-incompatibility traits. Theoretical and Applied Genetics, 107, 239-247.
73. Watterson GA (1978) The homozygosity test of neutrality. Genetics, 88, 405-417.
74. Wilberg MJ, Dreher BP (2004) GENECAP: a program for analysis of multilocus genotype data for non-invasive sampling and capture-recapture population estimation. Molecular Ecology Notes, 4, 783-785.
75. Woods JG, Paetkau D, Lewis D, McLellan BN, Proctor M, Strobeck C (1999) Genetic tagging of free-ranging black and brown bears. Wildlife Society Bulletin, 27, 616-627.
76. Wright S (1939) The distribution of self-sterility alleles in populations. Genetics, 24, 538-552.
77. Wright S (1946) Isolation by distance under diverse systems of mating. Genetics, 31, 39-59.