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Volumn 20, Issue 4, 2003, Pages 491-502

Influence of mutational and sampling factors on the estimation of demographic parameters in a "continuous" population under isolation by distance

Author keywords

Coalescence; Dispersal; Isolation by distance; Microsatellite DNA; Nonparametric ABC bootstrap

Indexed keywords

MICROSATELLITE DNA;

EID: 0037387469     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg034     Document Type: Article
Times cited : (87)

References (63)
  • 1
    • 0002734742 scopus 로고    scopus 로고
    • A comparative approach to the study of microsatellite evolution
    • D. B. Goldstein and C. Schlötterer, eds. Oxford University Press, Oxford
    • Amos, W. 1999. A comparative approach to the study of microsatellite evolution. Pp. 66-79 in D. B. Goldstein and C. Schlötterer, eds. Microsatellites: evolution and applications. Oxford University Press, Oxford.
    • (1999) Microsatellites: Evolution and Applications , pp. 66-79
    • Amos, W.1
  • 2
    • 0033994020 scopus 로고    scopus 로고
    • Inference from GeneTree in a subdivided population
    • Bahlo, M., and R. C. Griffiths. 2000. Inference from GeneTree in a subdivided population. Theor. Pop. Biol. 57:79-95.
    • (2000) Theor. Pop. Biol. , vol.57 , pp. 79-95
    • Bahlo, M.1    Griffiths, R.C.2
  • 3
    • 0036480996 scopus 로고    scopus 로고
    • Neutral evolution in spatially continuous populations
    • Barton, N. H., F. Depaulis, and A. M. Etheridge. 2002. Neutral evolution in spatially continuous populations. Theor. Popul. Biol. 61:31-48..
    • (2002) Theor. Popul. Biol. , vol.61 , pp. 31-48
    • Barton, N.H.1    Depaulis, F.2    Etheridge, A.M.3
  • 4
    • 0036567508 scopus 로고    scopus 로고
    • Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci
    • Brohede, J., C. Primmer, A. Møller, and H. Ellegren. 2002. Heterogeneity in the rate and pattern of germline mutation at individual microsatellite loci. Nucleic Acids Res. 30:1997-2003.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 1997-2003
    • Brohede, J.1    Primmer, C.2    Møller, A.3    Ellegren, H.4
  • 5
    • 0032855350 scopus 로고    scopus 로고
    • Seed dispersal near and far: Patterns across temperate and tropical forests
    • Clark, J. S., M. Silman, R. Kern, E. Macklin, and J. HilleRis-Lambers. 1999. Seed dispersal near and far: patterns across temperate and tropical forests. Ecology 80:1475-1494.
    • (1999) Ecology , vol.80 , pp. 1475-1494
    • Clark, J.S.1    Silman, M.2    Kern, R.3    Macklin, E.4    HilleRis-Lambers, J.5
  • 6
    • 84966143888 scopus 로고
    • The estimation of neighborhood parameters for plant populations
    • Crawford, T. J. 1984. The estimation of neighborhood parameters for plant populations. Heredity 52:273-283.
    • (1984) Heredity , vol.52 , pp. 273-283
    • Crawford, T.J.1
  • 8
    • 13344259999 scopus 로고    scopus 로고
    • A comprehensive genetic map of the human genome based on 5,264 microsatellites
    • Dib, C., S. Faure, C. Fizames et al. 1996. A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380:152-154.
    • (1996) Nature , vol.380 , pp. 152-154
    • Dib, C.1    Faure, S.2    Fizames, C.3
  • 9
    • 0000713911 scopus 로고    scopus 로고
    • Bootstrap confidence intervals
    • DiCiccio, T. J., and B. Efron. 1996. Bootstrap confidence intervals (with discussion). Stat. Sci. 11:189-228.
    • (1996) Stat. Sci. , vol.11 , pp. 189-228
    • DiCiccio, T.J.1    Efron, B.2
  • 10
    • 0034079715 scopus 로고    scopus 로고
    • Heterogeneous mutation processes in human microsatellite DNA sequences
    • Ellegren, H. 2000. Heterogeneous mutation processes in human microsatellite DNA sequences. Nat. Genet. 24:400-402.
    • (2000) Nat. Genet. , vol.24 , pp. 400-402
    • Ellegren, H.1
  • 12
    • 0002577818 scopus 로고    scopus 로고
    • Microsatellites and minisatellites for molecular ecology: Theoretical and empirical considerations
    • G. Carvalho, ed. NATO ASI series. IOS Press, Amsterdam
    • Estoup, A., and B. Angers. 1998. Microsatellites and minisatellites for molecular ecology: theoretical and empirical considerations. Pp. 55-86 in G. Carvalho, ed. Advances in molecular ecology. NATO ASI series. IOS Press, Amsterdam.
    • (1998) Advances in Molecular Ecology , pp. 55-86
    • Estoup, A.1    Angers, B.2
  • 13
    • 0002961485 scopus 로고    scopus 로고
    • Microsatellite evolution: Inferences from population data
    • D. B. Goldstein and C. Schlötterer, eds. Oxford University Press, Oxford
    • Estoup, A., and J.-M. Cornuet. 1999. Microsatellite evolution: inferences from population data. Pp. 49-65 in D. B. Goldstein and C. Schlötterer, eds. Microsatellites: evolution and applications. Oxford University Press, Oxford.
    • (1999) Microsatellites: Evolution and Applications , pp. 49-65
    • Estoup, A.1    Cornuet, J.-M.2
  • 14
    • 0036718239 scopus 로고    scopus 로고
    • Homoplasy at microsatellite loci and its consequences for population genetics analysis
    • Estoup, A., P. Jarne, and J.-M. Cornuet. 2002. Homoplasy at microsatellite loci and its consequences for population genetics analysis. Mol. Ecol. 11:1591-1604.
    • (2002) Mol. Ecol. , vol.11 , pp. 1591-1604
    • Estoup, A.1    Jarne, P.2    Cornuet, J.-M.3
  • 15
    • 0035692236 scopus 로고    scopus 로고
    • Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus
    • Estoup, A., I. J. Wilson, C. Sullivan, J.-M. Cornuet, and C. Moritz. 2001. Inferring population history from microsatellite and enzyme data in serially introduced cane toads, Bufo marinus. Genetics 159:1671-1687.
    • (2001) Genetics , vol.159 , pp. 1671-1687
    • Estoup, A.1    Wilson, I.J.2    Sullivan, C.3    Cornuet, J.-M.4    Moritz, C.5
  • 16
    • 0000672594 scopus 로고
    • A pain in the torus: Some difficulties with models of isolation by distance
    • Felsenstein, J. 1975. A pain in the torus: some difficulties with models of isolation by distance. Am. Nat. 109:359-368.
    • (1975) Am. Nat. , vol.109 , pp. 359-368
    • Felsenstein, J.1
  • 17
    • 0033197813 scopus 로고    scopus 로고
    • A comparison of two methods for estimating average levels of gene flow using microsatellites data
    • Gaggiotti, O. E., O. Lange, K. Rassmann, and C. Gliddon. 1999. A comparison of two methods for estimating average levels of gene flow using microsatellites data. Mol. Ecol. 8:1513-1520.
    • (1999) Mol. Ecol. , vol.8 , pp. 1513-1520
    • Gaggiotti, O.E.1    Lange, O.2    Rassmann, K.3    Gliddon, C.4
  • 19
    • 0034036808 scopus 로고    scopus 로고
    • Microsatellite mutations and inferences about human demography
    • Gonser, R., P. Donnelly, G. Nicholson, and A. Di Rienzo. 2000. Microsatellite mutations and inferences about human demography. Genetics 154:1793-1807.
    • (2000) Genetics , vol.154 , pp. 1793-1807
    • Gonser, R.1    Donnelly, P.2    Nicholson, G.3    Di Rienzo, A.4
  • 20
    • 0030454565 scopus 로고    scopus 로고
    • Testing differentiation in diploid populations
    • Goudet, J., M. Raymond, T. de Meeüs, and F. Rousset. 1996. Testing differentiation in diploid populations. Genetics 144:1931-1938.
    • (1996) Genetics , vol.144 , pp. 1931-1938
    • Goudet, J.1    Raymond, M.2    De Meeüs, T.3    Rousset, F.4
  • 21
    • 0028165934 scopus 로고
    • Metapopulation dynamics and genetics
    • Hastings, A., and S. Harrison. 1994. Metapopulation dynamics and genetics. Annu. Rev. Ecol. Syst. 25:167-188.
    • (1994) Annu. Rev. Ecol. Syst. , vol.25 , pp. 167-188
    • Hastings, A.1    Harrison, S.2
  • 23
    • 0001935493 scopus 로고
    • Gene genealogies and the coalescent process
    • D. Futuyama and J. Antonovics, eds. Oxford University Press, Oxford
    • Hudson, R. R. 1990. Gene genealogies and the coalescent process. Pp. 1-44 in D. Futuyama and J. Antonovics, eds. Oxford surveys in evolutionary biology. Oxford University Press, Oxford.
    • (1990) Oxford Surveys in Evolutionary Biology , pp. 1-44
    • Hudson, R.R.1
  • 24
    • 75949146309 scopus 로고
    • The number of alleles that can be maintained in a finite population
    • Kimura, M., and J. F. Crow. 1964. The number of alleles that can be maintained in a finite population. Genetics 49:725-738.
    • (1964) Genetics , vol.49 , pp. 725-738
    • Kimura, M.1    Crow, J.F.2
  • 26
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • -. 1982b. On the genealogy of large populations. J. Appl. Prob. 19A:27-43.
    • (1982) J. Appl. Prob. , vol.19 A , pp. 27-43
  • 27
    • 0001570580 scopus 로고    scopus 로고
    • Detectability, philopatry, and the distribution of dispersal distances in vertebrates
    • Koenig, W. D., D. Van Vuren, and P. N. Hooge. 1996. Detectability, philopatry, and the distribution of dispersal distances in vertebrates. Trends Ecol. Evol. 11:514-517.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 514-517
    • Koenig, W.D.1    Van Vuren, D.2    Hooge, P.N.3
  • 28
    • 0030426365 scopus 로고    scopus 로고
    • Dispersal data and the spread of invading organisms
    • Kot, M., M. A. Lewis, and P. van den Driessche. 1996. Dispersal data and the spread of invading organisms. Ecology 77:2027-2042.
    • (1996) Ecology , vol.77 , pp. 2027-2042
    • Kot, M.1    Lewis, M.A.2    Van den Driessche, P.3
  • 29
    • 0033738782 scopus 로고    scopus 로고
    • Absence of evidence for isolation by distance in expanding cane toad (Bufo marinus) population: An individual-based analysis of microsatellite genotypes
    • Leblois, R., F. Rousset, D. Tikel, C. Moritz, and A. Estoup. 2000. Absence of evidence for isolation by distance in expanding cane toad (Bufo marinus) population: an individual-based analysis of microsatellite genotypes. Mol. Ecol. 9:1905-1909.
    • (2000) Mol. Ecol. , vol.9 , pp. 1905-1909
    • Leblois, R.1    Rousset, F.2    Tikel, D.3    Moritz, C.4    Estoup, A.5
  • 30
    • 0001818163 scopus 로고
    • Quelques schémas probabilistes sur la variabilité des populations naturelles
    • Malécot, G. 1950. Quelques schémas probabilistes sur la variabilité des populations naturelles. Ann. Univ. Lyon A 13:37-60.
    • (1950) Ann. Univ. Lyon A , vol.13 , pp. 37-60
    • Malécot, G.1
  • 31
    • 0000319867 scopus 로고
    • Identical loci and relationship
    • L. M. Lecam and J. Neyman, eds. California University Press, Berkeley
    • -. 1967. Identical loci and relationship. Pp. 317-332 in L. M. Lecam and J. Neyman, eds. Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability, Vol. 4. California University Press, Berkeley.
    • (1967) Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability , vol.4 , pp. 317-332
  • 32
    • 0016560402 scopus 로고
    • Heterozygoty and relationship in regularly subdivided populations
    • -. 1975. Heterozygoty and relationship in regularly subdivided populations. Theor. Popul. Biol. 8:212-241.
    • (1975) Theor. Popul. Biol. , vol.8 , pp. 212-241
  • 33
    • 0015326213 scopus 로고
    • Rate of decrease of genetic variability in a two-dimensional continuous population of finite size
    • Maruyama, T. 1972. Rate of decrease of genetic variability in a two-dimensional continuous population of finite size. Genetics 70:639-651.
    • (1972) Genetics , vol.70 , pp. 639-651
    • Maruyama, T.1
  • 34
    • 0029984827 scopus 로고    scopus 로고
    • A generic estimation of population subdivision using distances between alleles with special interest to microsatellite loci
    • Michalakis, Y., and L. Excoffier. 1996. A generic estimation of population subdivision using distances between alleles with special interest to microsatellite loci. Genetics 142: 1061-1064.
    • (1996) Genetics , vol.142 , pp. 1061-1064
    • Michalakis, Y.1    Excoffier, L.2
  • 35
    • 0030450414 scopus 로고    scopus 로고
    • Estimation in an island model using simulation
    • Nath, H. B., and R. C. Griffiths. 1996. Estimation in an island model using simulation. Theor. Pop. Biol. 50:227-253.
    • (1996) Theor. Pop. Biol. , vol.50 , pp. 227-253
    • Nath, H.B.1    Griffiths, R.C.2
  • 36
    • 0030070216 scopus 로고    scopus 로고
    • Constraints on allele size at microsatellite loci: Implications for genetic differentiation
    • Nauta, M. J., and F. J. Weissing. 1996. Constraints on allele size at microsatellite loci: implications for genetic differentiation. Genetics 143:1021-1032.
    • (1996) Genetics , vol.143 , pp. 1021-1032
    • Nauta, M.J.1    Weissing, F.J.2
  • 37
    • 0000913208 scopus 로고    scopus 로고
    • Coalescent theory
    • D.A. Balding, M. Bishop and C. Cannings, eds. John Wiley & Sons, Chichester, U.K.
    • Nordborg, M. 2001. Coalescent theory. Pp. 179-208 in D.A. Balding, M. Bishop and C. Cannings, eds. Handbook of statistical genetics. John Wiley & Sons, Chichester, U.K.
    • (2001) Handbook of Statistical Genetics , pp. 179-208
    • Nordborg, M.1
  • 38
    • 0015765702 scopus 로고
    • A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population
    • Ohta, T., and M. Kimura. 1973. A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. 22:201-204.
    • (1973) Genet. Res. , vol.22 , pp. 201-204
    • Ohta, T.1    Kimura, M.2
  • 39
    • 0034521502 scopus 로고    scopus 로고
    • Phylogeography and population structure of an ecotonal marsupial, Bettongia tropica, determined using mtDNA and microsatellites
    • Pope, L. C., A. Estoup, and C. Moritz. 2000. Phylogeography and population structure of an ecotonal marsupial, Bettongia tropica, determined using mtDNA and microsatellites. Mol. Ecol. 9:2041-2053.
    • (2000) Mol. Ecol. , vol.9 , pp. 2041-2053
    • Pope, L.C.1    Estoup, A.2    Moritz, C.3
  • 40
    • 0027845841 scopus 로고
    • Seed dispersal curves: Behavior of the tail of the distribution
    • Portnoy, S., and M. F. Willson. 1993. Seed dispersal curves: behavior of the tail of the distribution. Evol. Ecol. 7:25-44.
    • (1993) Evol. Ecol. , vol.7 , pp. 25-44
    • Portnoy, S.1    Willson, M.F.2
  • 42
    • 0000262278 scopus 로고
    • GENEPOP (version 1.2): Population genetics software for exact tests and ecumenicism
    • Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86:248-249.
    • (1995) J. Hered. , vol.86 , pp. 248-249
    • Raymond, M.1    Rousset, F.2
  • 43
    • 0032493379 scopus 로고    scopus 로고
    • Genetic evidence for a paleolithic human population expansion in Africa
    • Reich, D. E., and D. B. Goldstein. 1998. Genetic evidence for a paleolithic human population expansion in Africa. Proc. Natl. Acad. Sci. USA 95:8119-8123.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 8119-8123
    • Reich, D.E.1    Goldstein, D.B.2
  • 44
    • 0021619929 scopus 로고
    • Deviations from Hardy-Weinberg proportions: Sampling variances and use in estimation of inbreeding coefficients
    • Robertson, A., and W. G. Hill. 1984. Deviations from Hardy-Weinberg proportions: sampling variances and use in estimation of inbreeding coefficients. Genetics 107:703-718.
    • (1984) Genetics , vol.107 , pp. 703-718
    • Robertson, A.1    Hill, W.G.2
  • 45
    • 0029983280 scopus 로고    scopus 로고
    • Equilibrium values of measures of population subdivision for stepwise mutation processes
    • Rousset, F. 1996. Equilibrium values of measures of population subdivision for stepwise mutation processes. Genetics 142:1357-1362.
    • (1996) Genetics , vol.142 , pp. 1357-1362
    • Rousset, F.1
  • 46
    • 0030888985 scopus 로고    scopus 로고
    • Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance
    • -. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219-1228.
    • (1997) Genetics , vol.145 , pp. 1219-1228
  • 47
    • 0033977405 scopus 로고    scopus 로고
    • Genetic differentiation between individuals
    • -. 2000. Genetic differentiation between individuals. J. Evol. Biol. 13:58-62.
    • (2000) J. Evol. Biol. , vol.13 , pp. 58-62
  • 48
    • 0002510638 scopus 로고    scopus 로고
    • Genetic approaches to the estimation of dispersal rates
    • J. Clobert, E. Danchin, A. A. Dhondt, and J. D. Nichols, eds. Oxford University Press, Oxford
    • -. 2001a. Genetic approaches to the estimation of dispersal rates. Pp. 18-28 in J. Clobert, E. Danchin, A. A. Dhondt, and J. D. Nichols, eds. Dispersal: individual, population and community. Oxford University Press, Oxford.
    • (2001) Dispersal: Individual, Population and Community , pp. 18-28
  • 49
    • 0001956639 scopus 로고    scopus 로고
    • Inferences from spatial population genetics
    • D. A. Balding, M. Bishop, and C. Cannings, eds. John Wiley & Sons, Chichester, U.K.
    • -. 2001b. Inferences from spatial population genetics. Pp. 239-265 in D. A. Balding, M. Bishop, and C. Cannings, eds. Handbook of statistical genetics. John Wiley & Sons, Chichester, U.K.
    • (2001) Handbook of Statistical Genetics , pp. 239-265
  • 50
    • 0001726749 scopus 로고
    • Asymptotic properties of the equilibrium probability of identity in a geographically structured population
    • Sawyer, S. 1977. Asymptotic properties of the equilibrium probability of identity in a geographically structured population. Adv. Appl. Prob. 9:268-282.
    • (1977) Adv. Appl. Prob. , vol.9 , pp. 268-282
    • Sawyer, S.1
  • 51
    • 0033808899 scopus 로고    scopus 로고
    • Evolutionary dynamics of microsatellite DNA
    • Schlötterer, C. 2000. Evolutionary dynamics of microsatellite DNA. Chromosoma 109:365-371.
    • (2000) Chromosoma , vol.109 , pp. 365-371
    • Schlötterer, C.1
  • 52
    • 0000392112 scopus 로고
    • Isolation by distance in equilibrium and non-equilibrium populations
    • Slatkin, M. 1993. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47:264-279.
    • (1993) Evolution , vol.47 , pp. 264-279
    • Slatkin, M.1
  • 53
    • 0002147424 scopus 로고
    • Gene flow and population structure
    • L. A. Real, ed. Princeton University Press, Princeton, N.J.
    • -. 1994. Gene flow and population structure. Pp. 3-17 in L. A. Real, ed. Ecological genetics. Princeton University Press, Princeton, N.J.
    • (1994) Ecological Genetics , pp. 3-17
  • 54
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • -. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
  • 55
    • 41049089007 scopus 로고    scopus 로고
    • Deriving dispersal distances from genetic data
    • Spong, G., and S. Creel. 2001. Deriving dispersal distances from genetic data. Proc. R. Soc. Lond. Ser. B 268:2571-2574.
    • (2001) Proc. R. Soc. Lond. Ser. B , vol.268 , pp. 2571-2574
    • Spong, G.1    Creel, S.2
  • 56
    • 0035793864 scopus 로고    scopus 로고
    • Genealogical and evolutionary inference with the human Y chromosome
    • Stumpf, M. P. H., and D. B. Goldstein. 2001. Genealogical and evolutionary inference with the human Y chromosome. Science 291:1738-1742.
    • (2001) Science , vol.291 , pp. 1738-1742
    • Stumpf, M.P.H.1    Goldstein, D.B.2
  • 57
    • 0034844753 scopus 로고    scopus 로고
    • "Neighborhood" size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods
    • Sumner, J., F. Rousset, A. Estoup, and C. Moritz. 2001. "Neighborhood" size, dispersal and density estimates in the prickly forest skink (Gnypetoscincus queenslandiae) using individual genetic and demographic methods. Mol. Ecol. 10:1917-1927.
    • (2001) Mol. Ecol. , vol.10 , pp. 1917-1927
    • Sumner, J.1    Rousset, F.2    Estoup, A.3    Moritz, C.4
  • 58
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 59
    • 0029786076 scopus 로고    scopus 로고
    • Genetic distances and reconstruction of phylogenetic trees from microsatellites DNA
    • Takezaki, N., and M. Nei. 1996. Genetic distances and reconstruction of phylogenetic trees from microsatellites DNA. Genetics 144:389-399.
    • (1996) Genetics , vol.144 , pp. 389-399
    • Takezaki, N.1    Nei, M.2
  • 60
    • 0027161022 scopus 로고
    • Mutation of human short tandem repeats
    • Weber, J. L., and C. Wong. 1993. Mutation of human short tandem repeats. Hum. Mol. Genet. 2:1123-1128.
    • (1993) Hum. Mol. Genet. , vol.2 , pp. 1123-1128
    • Weber, J.L.1    Wong, C.2
  • 61
    • 0031669749 scopus 로고    scopus 로고
    • Genealogical inference from microsatellite data
    • Wilson, I. J., and D. J. Balding. 1998. Genealogical inference from microsatellite data. Genetics 150:499-510.
    • (1998) Genetics , vol.150 , pp. 499-510
    • Wilson, I.J.1    Balding, D.J.2
  • 62
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright, S. 1943. Isolation by distance. Genetics 28:114-138.
    • (1943) Genetics , vol.28 , pp. 114-138
    • Wright, S.1
  • 63
    • 84872643499 scopus 로고
    • Isolation by distance under diverse systems of mating
    • -. 1946. Isolation by distance under diverse systems of mating. Genetics 31:39-59.
    • (1946) Genetics , vol.31 , pp. 39-59


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