Conditioning action of the environment on the protein dynamics studied through elastic neutron scattering

European Biophysics Journal

Volumn 35, Issue 7, 2006, Pages 591-599

  Paciaroni, A ^a   Cornicchi, E ^a   De Francesco, A ^b,c   Marconi, M ^a   Onori, G ^a  

^a UNIVERSITY OF PERUGIA   (Italy)

^b INFM   (Italy)

^c INSTITUT LAUE LANGEVIN   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GLUCOSE; GLYCEROL; LYSOZYME; WATER;

ARTICLE; DRY POWDER; HIGH TEMPERATURE; HYDRATION; NEUTRON SCATTERING; POWDER; SPECTROMETER;

ANIMALS; CHICKENS; EGG WHITE; ELASTICITY; ENVIRONMENT; GLUCOSE; GLYCEROL; MODELS, CHEMICAL; MODELS, MOLECULAR; MURAMIDASE; NEUTRON DIFFRACTION; NEUTRONS; PROTEIN CONFORMATION; SCATTERING, RADIATION; TEMPERATURE; THERMODYNAMICS; WATER;

EID: 33748623800     PISSN: 01757571     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00249-006-0073-7     Document Type: Article

References (60)

1. Allison SD, Chang B, Randolph TW, Carpenter JF (1999) Hydrogen bonding between sugar and protein is responsible for inhibition of dehydration-induced protein unfolding. Arch Biochem Biophys 365:289-298
2. Austin RH, Beeson KW, Eisenstein L, Frauenfelder H, Gunsalus I C (1975) Dynamics of ligand binding to myoglobin. Biochemistry 14:5355-5373
3. Bée M (1988) Quasielastic neutron scattering. Adam Hilger (ed), Bristol and Philadelphia
4. Bell LN, Hageman MJ, Muraoka LM (1995) Thermally induced denaturation of lyophilized bovine somatotropin and lysozyme as impacted by moisture and excipients. J Pharm Sci 84:707-712
5. Brumfiel G (2004) Just add water. Nature 428:14-15
6. Buitink J, Leprince O (2004) Glass formation in plant anhydrobiotes: survival in the dry state. Cryobiology 48:215-228
7. Burke M J (1986) The glassy state and survival of anhydrous biological systems. In: Leopold AC (ed) Membranes, metabolism and dry organisms. Cornell University Press, Ithaca pp 358-363
8. Caliskan G, Kisliuk A, Tsai AM, Soles CL, Sokolov AP (2002) Influence of solvent on dynamics and stability of a protein. J Non-Cryst Solids 307-310:887-893
9. Caliskan G, Mechtani D, Roh JH, Kisliuk A, Sokolov AP, Azzam S, Cicerone MT, Lin-Gibson S, Peral I (2004) Protein and solvent dynamics: how strongly are they coupled? J Chem Phys 121:1978-1983
10. Carpenter JF, Crowe JH (1988) The mechanism of cryoprotection of proteins by solutes. Cryobiology 25:244-255
11. Carpenter JF, Chang BS, Garzon-Rodriguez W, Randolph TW (2002) Rational design of stable lyophilized protein formulations: theory and practice. Pharm Biotechnol 13:109-133
12. Cordone L, Ferrand M, Vitrano E, Zaccai G (1999) Harmonic behavior of trehalose-coated carbon-monoxy-myolobin at high temperature. Biophys J 76:1043-1047
13. Cornicchi E, Onori G, Paciaroni A (2005) Picosecond-time-scale fluctuations of proteins in glassy matrices: the role of viscosity. Phys Rev Lett 95:158104(1)-158104(4)
14. Crowe LM, Reid DS, Crowe JH (1996) Is trehalose special for preserving dry biomaterials? Biophys J 71:2087-2093
15. Crowe JH, Carpenter JF, Crowe LM (1998) The role of vitrification in anhydrobiosis. Annu Rev Physiol 60:73-103
16. Daniel RM, Finney JL, Reat V, Dunn R, Ferrand M, Smith JC (1999). Enzyme dynamics and activity: time-scale dependence of dynamical transitions in glutamate dehydrogenase solution. Biophys J 77:2184-2190
17. De Francesco A, Marconi M, Cinelli S, Onori G, Paciaroni A (2004) Picosecond internal dynamics of lysozyme as affected by thermal unfolding in nonaqueous environment. Biophys J 86:480-487
18. Doster W, Cusack S, Petry W (1989) Dynamical transition of myoglobin revealed by inelastic neutron scattering. Nature 337:754-756
19. Fenimore PW, Frauenfelder H, McMahon BH, Parak FG (2002) Slaving: Solvent fluctuations dominate protein dynamics and functions. Proc Natl Acad Sci USA 99:16047-16051
20. Fenimore PW, Frauenfelder H, McMahon BH, Young RD (2004) Bulk-solvent and hydration-shell fluctuations, similar to a- and b-fluctuations in glasses, control protein motions and functions. Proc Natl Acad Sci USA 101:14408-14413
21. Ferrand M, Dianoux AJ, Petry W, Zaccai G (1993) Thermal motions and function of bacteriorhodopsin in purple membranes: effects of temperature and hydration studied by neutron scattering. Proc Natl Acad Sci USA 90:9668-9672
22. Frauenfelder H, Sligar SG, Wolynes PG (1991) The energy landscapes and motions of proteins. Science 254:1598-1603
23. Gabel F (2005) Protein dynamics in solution and powder measured by incoherent elastic neutron scattering: the influence of Q-range and energy resolution. Eur Biophys J 34:1-12
24. Gottfried DS, Peterson ES, Sheikh AG, Wang J, Yang M, Friedman CA (1996) Evidence for damped hemoglobin dynamics in a room temperature trehalose glass. J Phys Chem 100:12034-12042
25. Green JL, Angell CA (1989) Phase relations and vitrification in saccharide-water solutions and the trehalose anomaly. J Phys Chem 93:2880-2882
26. Gregory RB (1995) Protein-solvent interactions. Marcel Dekker, New York
27. Gregory RB, Lumry R (1985) Hydrogen exchange evidence for distinct structural classesin globular proteins. Biopolymers 24:301-326
28. Hagen SJ, Hofrichter J, Eaton WA (1995) Protein reaction kinetics in a room temperature glass. Science 269:959-962
29. Hayward JA, Smith JC (2002) Temperature dependence of protein dynamics: computer simulation analysis of neutron scattering properties. Biophys J 82:1216-1225
30. Hill JJ, Shalaev EY, Zografi G (2005) Thermodynamic and dynamic factors involved in the stability of native protein structure in amorphous solids in relation to levels of hydration. J Pharm Sci 94:1636-1667
31. Kleinert T, Doster W, Leyser H, Petry W, Schwarz V, Settles M (1998) Solvent composition and viscosity effects on the kinetics of CO-binding to horse myoglobin. Biochemistry 37:717-733
32. Klibanov AM (2001) Improving enzymes by using them in organic solvents. Nature 409:241-246
33. Lamy L, Portmann MO, Mathlouthi M, Larreta-Garde V (1990) Modulation of egg-white lysozyme activity by viscosity intensifier additives. Biophys Chem 36:71-76
34. Lee G (2002) Spray-drying of proteins. Pharm Biotechnol 13:135-158
35. Lee AL, Wand AJ (2001) Microscopic origins of entropy, heat capacity and the glass transition in proteins. Nature 411:501-504
36. Liao YH, Brown MB, Quader A, Martin GP (2002) Protective mechanism of stabilizing excipients against dehydration in the freeze-drying of proteins. Pharm Res 19(12):1854-1861
37. Magazù S, Maisano G, Migliardo F, Mondelli C (2004) Mean-Square displacement relationship in bioprotectant systems by elastic neutron scattering. Biophys J 86:3241-3249
38. Paciaroni A, Cinelli S, Onori G (2002) Effect of the environment on the protein dynamical transition: a neutron scattering study. Biophys J 83:1157-1164
39. Paciaroni A, Orecchini A, Cinelli S, Onori G, Lechner RE, Pieper J (2003) Protein dynamics on the picosecond time-scale as affected by the environment: a quasielastic neutron scattering study. Chem Phys 292:397-404
40. Paciaroni A, Cinelli S, Cornicchi E, De Francesco A, Onori G (2005) Fast fluctuations in protein powders: The role of hydration. Chem Phys Lett 410:400-403
41. Parak F, Frauenfelder H (1993) Protein dynamics. Physica A 201:332-345
42. Parak F, Frolov EN, Mossbauer RL, Goldanskii VI (1981) Dynamics of metmyoglobin crystals investigated by nuclear gamma resonance absorption. J Mol Biol 145:825-833
43. Pérez J, Zanotti J-M, Durand D (1999) Evolution of the internal dynamics of two globular proteins from dry powder to solution. Biophys J 77:454-469
44. Rariy RV, Klibanov AM (1997) Correct protein folding in glycerol. Proc Natl Acad Sci USA 94:13520-13523
45. Rasmussen DH, MacKenzie AP (1971) The glass transition in amorphous water. Application of the measurement to problems arising in cryobiology. J Phys Chem 75:967-973
46. Rasmussen BF, Stock AM, Ringe D, Petsko GA (1992) Crystalline ribonuclease A loses function below the dynamical transition at 220 K. Nature 357:423-424
47. Reat V, Dunn R, Ferrand M, Finney JL, Daniel RM, Smith JC (2000) Solvent dependence of dynamic transitions in protein solutions. Proc Natl Acad Sci USA 97:9961-9966
48. Ringe D, Petsko GA (1985) Mapping protein dynamics by X-ray diffraction. Prog Biophys Mol Biol 45:197-235
49. Roh JH, Novikov VN, Gregory RB, Curtis JE, Chowdhuri Z, Sokolv AP (2005) Onsets of anharmonicity in protein dynamics. Phys Rev Lett 95:038101(1)- 038101(4)
50. Smith JC (1991) Protein dynamics: comparison of simulations with inelastic neutron scattering experiments. Q Rev Biophys 24:1-65
51. Tang KES, Dill K (1998) Native protein fluctuations: the conformational-motion temperature and the inverse correlation of protein flexibility with protein stability. J Biomol Struct Dyn 16:397-411
52. Tehei M, Madern D, Pfister C, Zaccai G (2001) Fast dynamics of halophilic malate dehydrogenase and BSA measured by neutron scattering under various solvent conditions influencing protein stability. Proc Natl Acad Sci USA 98:14356-14361
53. Tsai AM, Neumann DA, Bell LN (2000) Molecular dynamics of solid-state lysozyme as affected by glycerol and water: a neutron scattering study. Biophys J 79:2728-2732
54. Tsai AM, Udovic TJ, Neumann DA (2001) The inverse relationship between protein dynamics and thermal stability. Biophys J 81:2339-2343
55. Vitkup D, Ringe D, Petsko GA, Karplus M (2000) Solvent mobility and the protein 'glass' transition. Nat Struct Biol 7:34-38
56. Wang W (2000) Lyophilization and development of solid protein pharmaceuticals. Int J Pharm 203:1-60
57. Weik M, Lehnert U, Zaccai G (2005) Liquid-like water confined in stacks of biological membranes at 200 K and its relation to protein dynamics. Biophys J 89:3639-3646
58. Williams DLJ, Rapanovich I, Russell AJ (1995) Proteins in essentially nonaqueous environments. In: Gregory RB (ed) Protein-solvent interactions, Marcel Dekker, New York
59. Wolkers WF, Walker NJ, Tablin F, Crowe JH (2001) Human platelets loaded with trehalose survive freeze-drying. Cryobiology 42:79-87
60. Zaccai G (2000) How soft is a protein? a protein dynamics force constant measured by neutron scattering. Science 288:1604-1607