Molecular karyotyping of human hepatocellular carcinoma using single-nucleotide polymorphism arrays

Oncogene

Volumn 25, Issue 40, 2006, Pages 5581-5590

  Midorikawa, Y ^a,c   Yamamoto, S ^a   Ishikawa, S ^a   Kamimura, N ^a   Igarashi, H ^b   Sugimura, H ^b   Makuuchi, M ^c   Aburatani, H ^a,d  

^a UNIVERSITY OF TOKYO   (Japan)

^b HAMAMATSU UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

Allelic imbalance; Copy number; Liver cancer; Oligonucleotide array; SNP

Indexed keywords

ARTICLE; CHROMOSOME IDENTIFICATION; CLINICAL ARTICLE; CONTROLLED STUDY; GENE MAPPING; GENETIC ANALYSIS; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; KARYOTYPING; LIVER CELL CARCINOMA; MUTATION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

ALGORITHMS; CARCINOMA, HEPATOCELLULAR; CELL CYCLE PROTEINS; EPIGENESIS, GENETIC; GENOMICS; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; LIVER NEOPLASMS; LOSS OF HETEROZYGOSITY; MULTIGENE FAMILY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; POLYMORPHISM, SINGLE NUCLEOTIDE; TRANSCRIPTION FACTORS; TUMOR SUPPRESSOR PROTEINS;

EID: 33748421506     PISSN: 09509232     EISSN: 14765594     Source Type: Journal    
DOI: 10.1038/sj.onc.1209537     Document Type: Article

References (53)

1. Abdollahi A, Godwin AK, Miller PD, Getts LA, Schultz DC, Taguchi T et al. (1997). Cancer Res 57: 2029-2034.
2. Abdollahi A, Pisarcik D, Roberts D, Weinstein J, Cairns P, Hamilton TC. (2003). J Biol Chem 278: 6041-6049.
3. Benetkiewicz M, Wang Y, Schaner M, Wang P, Mantripragada KK, Buckley PG et al. (2005). Genes Chromosomes Cancer 42: 228-237.
4. Bignell GR, Huang J, Greshock J, Watt S, Butler A, West S et al. (2004). Genome Res 14: 287-295.
5. Boige V, Laurent-Puig P, Fouchet P, Flejou JF, Monges G, Bedossa P et al. (1997). Cancer Res 57: 1986-1990.
6. Buckley PG, Jarbo C, Menzel U, Mathiesen T, Scott C, Gregory SG et al. (2005). Cancer Res 65: 2653-2661.
7. Cvetkovic D, Pisarcik D, Lee C, Hamilton TC, Abdollahi A. (2004). Gynecol Oncol 95: 449-455.
8. Engel E. (1980). Am J Med Genet 6: 137-143.
9. Engel E. (1993). Am J Med Genet 46: 670-674.
10. Grundy P, Wilson B, Telzerow P, Zhou W, Paterson MC. (1994). Am J Hum Genet 54: 282-289.
11. Hashimoto K, Mori N, Tamesa T, Okada T, Kawauchi S, Oga A et al. (2004). Mod Pathol 17: 617-622.
12. Henry I, Bonaiti-Pellie C, Chehensse V, Beldjord C, Schwartz C, Utermann G et al. (1991). Nature 351: 665-667.
13. Herman JG, Graff JR, Myohanen S, Nelkin BD, Baylin SB. (1996). Proc Natl Acad Sci USA 93: 9821-9826.
14. Hoque MO, Lee CC, Cairns P, Schoenberg M, Sidransky D. (2003). Cancer Res 63: 2216-2222.
15. Ishikawa S, Komura D, Tsuji S, Nishimura K, Yamamoto S, Panda B et al. (2005). Biochem Biophys Res Commun 333: 1309-1314.
16. Janne PA, Li C, Zhao X, Girard L, Chen TH, Minna J et al. (2004). Oncogene 23: 2716-2726.
17. Jou YS, Lee CS, Chang YH, Hsiao CF, Chen CF, Chao CC et al. (2004). Cancer Res 64: 3030-3036.
18. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F et al. (1992). Science 258: 818-821.
19. Kano M, Nishimura K, Ishikawa S, Tsutsumi S, Hirota K, Hirose M et al. (2003). Physiol Genomics 13: 31-46.
20. Katoh H, Shibata T, Kokubu A, Ojima H, Loukopoulos P, Kanai Y et al. (2005). J Hepatol 43: 863-874.
21. Kennedy GC, Matsuzaki H, Dong S, Liu WM, Huang J, Liu G et al. (2003). Nat Biotechnol 21: 1233-1237.
22. Kitayama Y, Igarashi H, Watanabe F, Maruyama Y, Kanamori M, Sugimura H. (2003). Lab Invest 83: 1311-1320.
23. Kondo Y, Kanai Y, Sakamoto M, Mizokami M, Ueda R, Hirohashi S. (2000). Hepatology 32: 970-979.
24. Kusano N, Shiraishi K, Kubo K, Oga A, Okita K, Sasaki K. (1999). Hepatology 29: 1858-1862.
25. Laurent-Puig P, Legoix P, Bluteau O, Belghiti J, Franco D, Binot F et al. (2001). Gastroenterology 120: 1763-1773.
26. Lieberfarb ME, Lin M, Lechpammer M, Li C, Tanenbaum DM, Febbo PG et al. (2003). Cancer Res 63: 4781-4785.
27. Lindblad-Toh K, Tanenbaum DM, Daly MJ, Winchester E, Lui WO, Villapakkam A et al. (2000). Nat Biotechnol 18: 1001-1005.
28. Lucito R, Healy J, Alexander J, Reiner A, Esposito D, Chi M et al. (2003). Genome Res 13: 2291-2305.
29. Malcolm S, Clayton-Smith J, Nichols M, Robb S, Webb T, Armour JA et al. (1991). Lancet 337: 694-697.
30. Mei R, Galipeau PC, Prass C, Berno A, Ghandour G, Patil N et al. (2000). Genome Res 10: 1126-1137.
31. Midorikawa Y, Tsutsumi S, Nishimura K, Kamimura N, Kano M, Sakamoto H et al. (2004). Cancer Res 64: 7263-7270.
32. Midorikawa Y, Tsutsumi S, Taniguchi H, Ishii M, Kobune Y, Kodama T et al. (2002). Jpn J Cancer Res 93: 636-643.
33. Murthy SK, DiFrancesco LM, Ogilvie RT, Demetrick DJ. (2002). Mod Pathol 15: 1241-1250.
34. Nagai H, Pineau P, Tiollais P, Buendia MA, Dejean A. (1997). Oncogene 14: 2927-2933.
35. Nannya Y, Sanada M, Nakazaki K, Hosoya N, Wang L, Hangaishi A et al. (2005). Cancer Res 65: 6071-6079.
36. Nicholls RD, Knoll JH, Butler MG, Karam S, Lalande M. (1989). Nature 342: 281-285.
37. Niketeghad F, Decker HJ, Caselmann WH, Lund P, Geissler F, Dienes HP et al. (2001). Br J Cancer 85: 697-704.
38. Okabe H, Ikai I, Matsuo K, Satoh S, Momoi H, Kamikawa T et al. (2000). Hepatology 31: 1073-1079.
39. Patil MA, Gutgemann I, Zhang J, Ho C, Cheung ST, Ginzinger D et al. (2005). Carcinogenesis 26: 2050-2057.
40. Piao Z, Park C, Park JH, Kim H. (1998). Int J Cancer 75: 29-33.
41. Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D et al. (1998). Nat Genet 20: 207-211.
42. Pollack JR, Perou CM, Alizadeh AA, Eisen MB, Pergamenschikov A, Williams CF et al. (1999). Nat Genet 23: 41-46.
43. Pollack JR, Sorlie T, Perou CM, Rees CA, Jeffrey SS, Lonning PE et al. (2002). Proc Natl Acad Sci USA 99: 12963-12968.
44. Raghavan M, Lillington DM, Skoulakis S, Debernardi S, Chaplin T, Foot NJ et al. (2005). Cancer Res 65: 375-378.
45. Sano T, Kityama Y, Igarashi H, Suzuki M, Tanioka F, Chida K et al. (2006). Pathol Int 56: 117-125.
46. Taguchi T, Jhanwar SC, Siegfried JM, Keller SM, Testa JR. (1993). Cancer Res 53: 4349-4355.
47. Temple IK, James RS, Crolla JA, Sitch FL, Jacobs P, Howell WM et al. (1995). Nat Genet 9: 110-112.
48. Thrash-Bingham CA, Salazar H, Freed JJ, Greenberg RE, Tartof KD. (1995). Cancer Res 55: 6189-6195.
49. Upender MB, Habermann JK, McShane LM, Korn EL, Barrett JC, Difilippantonio MJ et al. (2004). Cancer Res 64: 6941-6949.
50. Varrault A, Ciani E, Apiou F, Bilanges B, Hoffmann A, Pantaloni C et al. (1998). Proc Natl Acad Sci USA 95: 8835-8840.
51. Wang DG, Fan JB, Siao CJ, Berno A, Young P, Sapolsky R et al. (1998). Science 280: 1077-1082.
52. Weissenbach J, Gyapay G, Dib C, Vignal A, Morissette J, Millasseau P et al. (1992). Nature 359: 794-801.
53. Zhao X, Li C, Paez JG, Chin K, Janne PA, Chen TH et al. (2004). Cancer Res 64: 3060-3071.