Rapid detection of Phytophthora cinnamomi using PCR with primers derived from the Lpv putative storage protein genes

Plant Pathology

Volumn 52, Issue 6, 2003, Pages 681-693

  Kong, P ^a   Hong, C X ^a   Richardson, P A ^a  

^a VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

Detection; Identification; Molecular genetics; PCR; Phytophthora root rot; Phytophthora sojae

Indexed keywords

DETECTION METHOD; IDENTIFICATION METHOD; PATHOGEN; POLYMERASE CHAIN REACTION;

BACTERIA (MICROORGANISMS); FUNGI; OOMYCETES; PHYTOPHTHORA; PHYTOPHTHORA CINNAMOMI; PHYTOPHTHORA SOJAE; PYTHIUM;

EID: 0347662316     PISSN: 00320862     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2003.00935.x     Document Type: Article

References (64)

1. Ali-Shtayeh MS, MacDonald JD, Kabashima J, 1991. A method for using commercial ELISA tests to detect zoospores of Phytophthora and Pythium species in irrigation water. Plant Disease 75, 305-11.
2. Bailey AM, Mitchell DJ, Manjunath KL, Nolasco G, Niblett CL, 2002. Identification to the species level of the plant pathogens Phytophthora and Pythium by using unique sequences of the ITS1 region of ribosomal DNA as capture probes for PCR ELISA. FEMS Microbiology Letters 207, 153-8.
3. Benson DM, 1991. Detection of Phytophthora cinnamomi in azalea with commercial serological assay kits. Plant Disease 75, 478-82.
4. Bonants P, Hagenaar-de Weerdt M, van Gent-Pelzer M, Lacourt I, Cooke D, Duncan J, 1997. Detection and identification of Phytophthora fragariae Hickman by the polymerase chain reaction. European Journal of Plant Pathology 103, 345-55.
5. Bonants PJM, van Gent-Pelzer MPE, Hagenaar-de Weerdt M, 2000. Characterization and detection of Phytophthora fragariae in plant, water and soil by molecular methods. EPPO Bulletin 30, 525-31.
6. von Broembsen SL, Wilson SK, 2000. Occurrence of Phytophthora spp. in nursery runoff and recycled irrigation water. Phytopathology 90 (Suppl.):S92 (Abrstract).
7. Cacciola SO, Williams NA, Cooke DEL, Duncan JM, 2001. Molecular identification and detection of Phytophthora species on some important Mediterranean plants including sweet chestnut. Forest Snow and Landscape Research 76, 351-6.
8. Cahill DM, Hardham AR, 1994a. A dipstick immunoassay for the specific detection of Phytophthora cinnamomi in soils. Phytopathology 84, 1284-92.
9. Cahill DM, Hardham AR, 1994b. Exploitation of zoospore taxis in the development of a novel dipstick immunoassay for the specific detection of Phytophthora cinnamomi. Phytopathology 84, 193-200.
10. Coelho AC, Cravador A, Bollen A, Ferraz JFP, Moreira AC, Fauconnier A, Godfroid E, 1997. Highly specific and sensitive non-radioactive molecular identification of Phytophthora cinnamomi. Mycological Research 101, 1499-507.
11. Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM, 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genetics and Biology 30, 17-32.
12. Cooke DEL, Duncan JM, Lacourt I, 1995a. PCR-based detection of Phytophthora species in horticultural crops. BCPC Symposium Proceedings 63, 159-62.
13. Cooke DEL, Duncan JM, Unkles S, 1995b. Diagnosis and detection of Phytophthora fragariae in raspberry and strawberry. EPPO Bulletin 25, 95-8.
14. Dobrowolski MP, O'Brien PA, 1993. Use of RAPD-PCR to isolate a species-specific DNA probe for Phytophthora cinnamomi. FEMS Microbiology Letters 113, 43-8.
15. Ersek T, Schoelz JE, English JT, 1994. PCR amplification of species-specific DNA sequences can distinguish among Phytophthora species. Applied and Environmental Microbiology 60, 2616-21.
16. Erwin DC, Ribeiro OK, 1996. Phytophthora Diseases Worldwide. St Paul, MN, USA: APS Press.
17. Farr DF, Bills GF, Chamuris GP, Rossman AY, 1989. Fungi on Plants and Plant Products in the United States. St Paul, MN, USA: APS Press.
18. Ferguson AJ, Jeffers SN, 1999. Detecting multiple species of Phytophthora in container mixes from ornamental crop nurseries. Plant Disease 83, 1129-36.
19. Förster H, Oudemans P, Coffey MD, 1990. Mitochondrial and nuclear DNA diversity within six species of Phytophthora. Experimental Mycology 14, 18-31.
20. Gabor BK, O'Gara ET, Philip BA, Horan DP, Hardham AR, 1993. Specificities of monoclonal antibodies to Phytophthora cinnamomi in two rapid diagnostic assays. Plant Disease 77, 1189-97.
21. Gayler KR, Popa KM, Maksel DM, Ebert DL, Grant BR, 1997. The distribution of elcitin-like gene sequences in relation to elicitin protein secretion within the class oomycetes. Molecular Plant Pathology On-Line [http:// www.bspp.org.uk/mppol] 1997/0623 gayler.
22. Greenhalgh FC, 1978. Evaluation of techniques for quantitative detection of Phytophthora cinnamomi. Soil Biology and Biochemistry 10, 257-9.
23. Grote D, Olmos A, Kofoet A, Tuset JJ, Bertolini E, Cambra M, 2002. Specific and sensitive detection of Phytophthora nicotianae by simple and nested PCR. European Journal of Plant Pathology 108, 197-207.
24. Hahn R, Werres S, 1997. Development of a dot immunobinding assay to detect Phytophthora spp. in naturally dark-rooted woody plants. Annals of Applied Biology 130, 453-66.
25. Hardham AR, Suzaki E, Perkin JL, 1985. The detection of monoclonal antibodies specific for surface components on zoospores and cysts of Phytophthora cinnamomi. Experimental Mycology 9, 264-8.
26. Haymes K, Tooley P, Thomas C, Williams V, Connor J, Bush J, Hicks D, Turpin R, Scott D, 2000. The evaluation of commercial diagnostic kits for the detection of Phytophthora species. (Abstract.) Phytopathology 90(Suppl.), S34.
27. Ho HH, 2002. Phytophthora cinnamomi var. robiniae var. nov on labk locust in Jiangsu Province of China. Mycotaxon 82, 391-6.
28. Hong CX, Bush EA, Richardson PA, Stromberg EL, 2001. The major deterrent to recycling irrigation water in nursery and greenhouse operations despite the lack of alternatives for limiting nonpoint source pollution. In: Poff, J ed. Proceedings of Virginia Water Symposium, 2001. Charlottesville, VA, USA: Virginia Water Resources Research Center, 72-7.
29. Hong CX, Richardson PA, Kong P, 2002. Filter membranes as a tool for isolating pythiaceous species from irrigation water. Phytopathology 92, 610-6.
30. Ippolito A, Schena L, Nigro F, 2002. Detection of Phytophthora nicotianae and P. citrophthora in citrus roots and soils by nested PCR. European Journal of Plant Pathology 108, 855-68.
31. Judelson HS, Messenger-Routh B, 1996. Quantitation of Phytophthora cinnamomi in avocado roots using a species-specific DNA probe. Phytopathology 86, 763-8.
32. Judelson HS, Tooley PW, 2000. Enhanced polymerase chain reaction methods for detecting and quantifying Phytophthora infestans in plants. Phytopathology 90, 1112-9.
33. Kong P, Hong CX, Jeffers SN, Richardson PA, 2003a. A species-specific polymerase chain reaction assay for rapid detection of Phytophthora nicotianae in irrigation water. Phytopathology 93, 822-31.
34. Kong P, Hong CX, Richardson PA, Gallegly ME, 2003b. Single-strand- confirmation polymorphism of ribosomal DNA for species differentiation in genus Phytophthora. Fungal Genetics and Biology 39, 238-49.
35. Kratka J, Kynerova B, Sykorova S, Podana M, 1996. The diagnosis of Phytophthora spp. by polyclonal antibodies -observation of antibodies specificity. Ochrana Rostlin 32, 241-9.
36. Lacourt I, Duncan JM, 1997. Specific detection of Phytophthora nicotianae using the polymerase chain reaction and primers based on the DNA sequence of its elicitin gene ParA1. European Journal of Plant Pathology 103, 73-83.
37. Latorre BA, Wilcox WF, 1996. Detection of Phytophthora spp. in fruit trees by immunological assays. Fitopatologia 32, 202-6.
38. Lee SB, White TJ, Taylor JW, 1993. Detection of Phytophthora species by oligonucleotide hybridization to amplified ribosomal DNA spacers. Phytopathology 83, 177-81.
39. Lévesque CA, Harlton CE, de Cock AWAM, 1998. Identification of some oomycetes by reverse dot blot hybridization. Phytopathology 88, 213-22.
40. Liew ECY, Maclean DJ, Irwin JAG, 1998. Specific PCR based detection of Phytophthora medicaginis using the intergenic spacer region of the ribosomal DNA. Mycological Research 102, 73-80.
41. MacDonald JD, Ali-Shtayeh MS, Kabashima J, Stites J, 1994. Occurrence of Phytophthora species in recirculated nursery irrigation effluents. Plant Disease 78, 607-11.
42. MacDonald JD, Stites J, Kabashima J, 1990. Comparison of serological and culture plate methods for detecting species of Phytophthora, Pythium, and Rhizoctonia in ornamental plants. Plant Disease 74, 655-9.
43. Marshall JS, Wilkinson JM, Moore T, Hardham AR, 2001. Structure and expression of the genes encoding proteins resident in large peripheral vesicles of Phytophthora cinnamomi zoospores. Protoplasma 215, 226-39.
44. McDougall KL, St Hardy GEJ, Hobbs RJ, 2002. Distribution of Phytophthora cinnamomi in the northern jarrah (Eucalyptus marginata) forest of Western Australia in relation to dieback age and topography. Australian Journal of Botany 50, 107-14.
45. Old KM, Moran GF, Bell JS, 1984. Isozyme variability among isolates of Phytophthora cinnamomi from Australia and Papua, New Guinea. Canadian Journal of Botany 62, 2016-22.
46. Oudemans PV, 1999. Phytophthora species associated with cranberry root rot and surface irrigation water in New Jersey. Plant Disease 83, 251-8.
47. Panabières F, Ponchet M, Allasia V, Cardin L, Ricci P, 1997. Characterization of border species among Pythiaceae: several Pythium isolates produce elicitins, typical proteins from Phytophthora spp. Mycological Research 101, 1459-68.
48. Pettitt TR, Finlay AR, Scott MA, Davies EM, 1998. Development of a system simulating commercial production conditions for assessing the potential spread of Phytophthora cryptogea root rot of hardy nursery stock in recirculating irrigation water. Annals of Applied Biology 132, 61-75.
49. Pettitt TR, Wakeham AJ, Wainwright MF, White JG, 2002. Comparison of serological, culture, and bait methods for detection of Pythium and Phytophthora zoospores in water. Plant Pathology 51, 720-7.
50. Ploetz RC, Parrado JL, 1988. Quantitation and detection of Phytophthora cinnamomi in avocado production areas of South Florida. Plant Disease 72, 981-4.
51. Roiger DJ, Jeffers SN, 1991. Evaluation of Trichoderma spp. for biological control of Phytophthora crown and root rot of apple seedlings. Phytopathology 81, 910-7.
52. Schubert R, Bahnweg G, Nechwatal J, Jung T, Cooke DEL, Duncan JM, Muller-Starck G, Langebartels C, Sandermann H Jr, Oßwald W, 1999. Detection and quantification of Phytophthora species which are associated with root-rot diseases in European deciduous forests by species-specific polymerase chain reaction. European Journal of Forest Pathology 29, 169-88.
53. Themann K, Werres S, 1997. In Vitro Comparison of Different Diagnostic Methods for the Detection of Phytophthora Species in Water. Proceedings of the 9th International Congress on Soilless Culture, 1996. Wageningen, Netherlands: International Society for Soilless Culture, 535-50.
54. Themann K, Werres S, Luttmann R, Diener HA, 2002. Observations of Phytophthora spp. in water recirculation systems in commercial hardy ornamental nursery stock. European Journal of Plant Pathology 108, 337-43.
55. Tooley PW, Bunyard BA, Carras MM, Hatziloukas E, 1997. Development of PCR primers from internal transcribed spacer region 2 for detection of Phytophthora species infecting potatoes. Applied and Environmental Microbiology 63, 1467-75.
56. Tooley PW, Carras MM, Lambert DH, 1998. Application of a PCR-based test for detection of potato late blight and pink rot in tubers. American Journal of Potato Research 75, 187-94.
57. Trout CL, Ristaino JB, Madritch M, Wangsomboondee T, 1997. Rapid detection of Phytophthora infestans in late blight-infected potato and tomato using PCR. Plant Disease 81, 1042-8.
58. Tsao PH, 1990. Why many Phytophthora root rots and crown rots of tree and horticultural crops remain undetected. EPPO Bulletin 20, 11-7.
59. van der Plaats-Niterink AJ, 1981. Monograph of the Genus Pythium. Netherlands: Centraalbureau voor Schimmelcultures Baarn, Institute of Royal Netherlands Academy of Sciences and Letters.
60. Wakeham AJ, Pettitt TR, White JG, 1997. A novel method for detection of viable zoospores of Pythium in irrigation water. Annals of Applied Biology 131, 427-35.
61. Werres S, Hahn R, Themann K, 1997. Application of different techniques to detect Phytophthora spp. in roots of commercially produced Chamaecyparis lawsoniana. Journal of Plant Diseases and Protection 104, 474-82.
62. Winton LM, Hansen EM, 2001. Molecular diagnosis of Phytophthora lateralis in trees, water, and foliage baits using multiplex polymerase chain reaction. Forest Pathology 31, 275-83.
63. Yamak F, Peever TL, Grove GG, Boal RL, 2002. Occurrence and identification of Phytophthora spp. pathogenic to pear fruit in irrigation water in Wenatchee River Valley of Washington State. Phytopathology 92, 1210-7.
64. Zentmyer GA, Mircetich SM, 1966. Saprophytism and persistence in soil by Phytophthora cinnamomi. Phytopathology 56, 710-2.