-
1
-
-
0030972952
-
H-NS: A modulator of environmentally regulated gene expression
-
Atlung,T. and Ingmer,H. (1997) H-NS: a modulator of environmentally regulated gene expression. Mol. Microbiol., 24, 7-17.
-
(1997)
Mol. Microbiol.
, vol.24
, pp. 7-17
-
-
Atlung, T.1
Ingmer, H.2
-
2
-
-
0027293233
-
Sigma s-dependent promoters in Escherichia coli are located in DNA regions with intrinsic curvature
-
Espinosa-Urgel,M. and Tormo,A. (1993) Sigma s-dependent promoters in Escherichia coli are located in DNA regions with intrinsic curvature. Nucleic Acids Res., 21, 3667-3670.
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 3667-3670
-
-
Espinosa-Urgel, M.1
Tormo, A.2
-
3
-
-
0028298256
-
Promoters responsive to DNA bending: A common theme in prokaryotic gene expression
-
Pérez-Martin,J., Rojo,F. and De Lorenzo,V. (1994) Promoters responsive to DNA bending: a common theme in prokaryotic gene expression. Microbiol. Rev., 58, 268-290.
-
(1994)
Microbiol. Rev.
, vol.58
, pp. 268-290
-
-
Pérez-Martin, J.1
Rojo, F.2
De Lorenzo, V.3
-
4
-
-
0030599011
-
54-dependent promoters on linear templates requires intrinsic or induced bending of the DNA
-
54-dependent promoters on linear templates requires intrinsic or induced bending of the DNA. J. Mol. Biol., 261, 348-356.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 348-356
-
-
Carmona, M.1
Magasanik, B.2
-
5
-
-
0024408081
-
Influence of the sequence-dependent flexure of DNA on transcription in E.coli
-
Collis,C.M., Molloy,P.L., Both,G.W. and Drew,H.R. (1989) Influence of the sequence-dependent flexure of DNA on transcription in E.coli. Nucleic Acids Res., 17, 9447-9468.
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 9447-9468
-
-
Collis, C.M.1
Molloy, P.L.2
Both, G.W.3
Drew, H.R.4
-
6
-
-
0032250171
-
Relationship between codon usage and sequence dependent curvature of genomes
-
Jáuregui,R., O'Reilly,F., Bolivar,F. and Merino,E. (1998) Relationship between codon usage and sequence dependent curvature of genomes. Microb. Comp. Genomics, 3, 243-253.
-
(1998)
Microb. Comp. Genomics
, vol.3
, pp. 243-253
-
-
Jáuregui, R.1
O'Reilly, F.2
Bolivar, F.3
Merino, E.4
-
7
-
-
0033302046
-
Curved DNA in promoter sequences
-
Gabrielian, A.E., Landsman,D. and Bolshoy,A. (1999-2000) Curved DNA in promoter sequences. In Silico Biol., 1, 83-96.
-
(1999)
In Silico Biol.
, vol.1
, pp. 83-96
-
-
Gabrielian, A.E.1
Landsman, D.2
Bolshoy, A.3
-
8
-
-
0033828272
-
Ecologic genomics of DNA: Upstream bending in prokaryotic promoters
-
Bolshoy,A. and Nevo,E. (2000) Ecologic genomics of DNA: upstream bending in prokaryotic promoters. Genome Res., 10, 1185-1193.
-
(2000)
Genome Res.
, vol.10
, pp. 1185-1193
-
-
Bolshoy, A.1
Nevo, E.2
-
9
-
-
0037015326
-
Analysis of DNA curvature in mycobacterial promoters using theoretical models
-
Kalate,R.N., Kulkami,B.D. and Nagaraja,V. (2002) Analysis of DNA curvature in mycobacterial promoters using theoretical models. Biophys. Chem., 99, 77-97.
-
(2002)
Biophys. Chem.
, vol.99
, pp. 77-97
-
-
Kalate, R.N.1
Kulkami, B.D.2
Nagaraja, V.3
-
10
-
-
0033956060
-
The COG database: A tool for genome-scale analysis of protein functions and evolution
-
Tatusov,R.L., Galperin,M.Y., Natale,D.A. and Koonin,E.V. (2000) The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res., 28, 33-36.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 33-36
-
-
Tatusov, R.L.1
Galperin, M.Y.2
Natale, D.A.3
Koonin, E.V.4
-
11
-
-
0030271631
-
Activation and repression of E.coli promoters
-
Gralla,J.D. (1996) Activation and repression of E.coli promoters. Curr. Opin. Genet. Dev., 6, 526-530.
-
(1996)
Curr. Opin. Genet. Dev.
, vol.6
, pp. 526-530
-
-
Gralla, J.D.1
-
12
-
-
0001291140
-
A powerful non-homology method for the prediction of operons in prokaryotes
-
Moreno-Hagelsieb,G. and Collado-Vides,J. (2002) A powerful non-homology method for the prediction of operons in prokaryotes. Bioinformatics, 18 (Suppl. 1), 329-336.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
, pp. 329-336
-
-
Moreno-Hagelsieb, G.1
Collado-Vides, J.2
-
13
-
-
0028624664
-
Bending and curvature calculations in B-DNA
-
Goodsell,D.S. and Dickerson,R.E. (1994) Bending and curvature calculations in B-DNA. Nucleic Acids Res., 22, 5497-5503.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 5497-5503
-
-
Goodsell, D.S.1
Dickerson, R.E.2
-
14
-
-
0023001414
-
Sequence periodicities in chicken nucleosome core DNA
-
Satchwell,S.C., Drew,H.R. and Travers,A.A. (1986) Sequence periodicities in chicken nucleosome core DNA. J. Mol. Biol., 191, 659-675.
-
(1986)
J. Mol. Biol.
, vol.191
, pp. 659-675
-
-
Satchwell, S.C.1
Drew, H.R.2
Travers, A.A.3
-
15
-
-
0030995510
-
Distribution of sequence-dependent curvature in genomic DNA sequences
-
Gabrielian,A., Vlahovicek,K. and Pongor,S. (1997) Distribution of sequence-dependent curvature in genomic DNA sequences. FEBS Lett., 406, 69-74.
-
(1997)
FEBS Lett.
, vol.406
, pp. 69-74
-
-
Gabrielian, A.1
Vlahovicek, K.2
Pongor, S.3
-
16
-
-
0021760063
-
Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity
-
Mulligan,M.E., Hawley,D.K., Entriken,R. and McClure,W.R. (1984) Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity. Nucleic Acids Res., 12, 789-800.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 789-800
-
-
Mulligan, M.E.1
Hawley, D.K.2
Entriken, R.3
McClure, W.R.4
-
17
-
-
0033570908
-
Compilation and analysis of σ(54)-dependent promoter sequences
-
Barrios,H., Valderrama,B. and Morett,E. (1999) Compilation and analysis of σ(54)-dependent promoter sequences. Nucleic Acids Res., 27, 4305-4313.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4305-4313
-
-
Barrios, H.1
Valderrama, B.2
Morett, E.3
-
18
-
-
0031874431
-
DIAMOD: Display and modeling of DNA bending
-
Dlakic,M. and Harrington,R.E. (1998) DIAMOD: display and modeling of DNA bending. Bioinformatics, 14, 326-331.
-
(1998)
Bioinformatics
, vol.14
, pp. 326-331
-
-
Dlakic, M.1
Harrington, R.E.2
-
19
-
-
0032522139
-
DNA bending: The prevalence of kinkiness and the virtues of normality
-
Dickerson,E.R., (1998) DNA bending: the prevalence of kinkiness and the virtues of normality. Nucleic Acids Res., 26, 1906-1926.
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1906-1926
-
-
Dickerson, E.R.1
-
20
-
-
0025298679
-
Promoters and autogenous control of the Escherichia coli hupA and hupB genes
-
Kohno,K., Wada,M., Kano,Y. and Imamoto,F. (1990) Promoters and autogenous control of the Escherichia coli hupA and hupB genes. J. Mol. Biol., 213, 27-36.
-
(1990)
J. Mol. Biol.
, vol.213
, pp. 27-36
-
-
Kohno, K.1
Wada, M.2
Kano, Y.3
Imamoto, F.4
-
21
-
-
0030601787
-
Regulation of HU-α and HU-β by CRP and FIS in Escherichia coli
-
Claret,L. and Rouviere-Yaniv,J. (1996) Regulation of HU-α and HU-β by CRP and FIS in Escherichia coli. J. Mol. Biol., 263, 126-139.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 126-139
-
-
Claret, L.1
Rouviere-Yaniv, J.2
-
22
-
-
0023645583
-
Dual level control of the Escherichia coli pheST-himA operon expression: tRNA-phe-dependent attenuation and transcriptional operator-repressor control by himA and the SOS network
-
Mechulam,Y., Blanquet,S. and Fayat,G. (1987) Dual level control of the Escherichia coli pheST-himA operon expression: tRNA-phe-dependent attenuation and transcriptional operator-repressor control by himA and the SOS network. J. Mol. Biol., 197, 453-470.
-
(1987)
J. Mol. Biol.
, vol.197
, pp. 453-470
-
-
Mechulam, Y.1
Blanquet, S.2
Fayat, G.3
-
23
-
-
0019822504
-
SOS induction and autoregulation of the himA gene for site-specific recombination in Escherichia coli
-
Miller,H.I., Kirk,M. and Echols,H. (1981) SOS induction and autoregulation of the himA gene for site-specific recombination in Escherichia coli. Proc. Natl Acad. Sci. USA, 78, 6754-6758.
-
(1981)
Proc. Natl. Acad. Sci. USA
, vol.78
, pp. 6754-6758
-
-
Miller, H.I.1
Kirk, M.2
Echols, H.3
-
24
-
-
0028149835
-
Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation
-
Aviv,M., Giladi,H., Schreiber,G., Oppenheim,A.B. and Glaser,G. (1994) Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation. Mol. Microbiol., 14, 1021-1031.
-
(1994)
Mol. Microbiol.
, vol.14
, pp. 1021-1031
-
-
Aviv, M.1
Giladi, H.2
Schreiber, G.3
Oppenheim, A.B.4
Glaser, G.5
-
25
-
-
0023176329
-
Modulation of transcription by DNA supercoiling: A deletion analysis of the Escherichia coli gyrA and gyrB promoters
-
Menzel,R. and Gellert,M. (1987) Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters. Proc. Natl Acad. Sci. USA, 84, 4185-4189.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 4185-4189
-
-
Menzel, R.1
Gellert, M.2
-
26
-
-
0035082155
-
DNA supercoiling and transcription in Escherichia coli: The FIS connection
-
Travers,A., Schneider,R. and Muskhelishvili,G. (2001) DNA supercoiling and transcription in Escherichia coli: the FIS connection. Biochimie, 83, 213-217.
-
(2001)
Biochimie
, vol.83
, pp. 213-217
-
-
Travers, A.1
Schneider, R.2
Muskhelishvili, G.3
-
27
-
-
0032463438
-
Molecular characterization of the gene encoding the DNA gyrase A subunit of Streptococcus pneumoniae
-
Balas,D., Fernandez-Moreira,E. and De La Campa,A.G. (1998) Molecular characterization of the gene encoding the DNA gyrase A subunit of Streptococcus pneumoniae. J. Bacteriol., 180, 2854-2861.
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2854-2861
-
-
Balas, D.1
Fernandez-Moreira, E.2
De La Campa, A.G.3
-
28
-
-
0030782227
-
Role of architectural elements in combinatorial regulation of initiation of DNA replication in Escherichia coli
-
Polaczek,P., Kwan,K., Liberies,D.A. and Campbell,J.L. (1997) Role of architectural elements in combinatorial regulation of initiation of DNA replication in Escherichia coli. Mol. Microbiol., 26, 261-275.
-
(1997)
Mol. Microbiol.
, vol.26
, pp. 261-275
-
-
Polaczek, P.1
Kwan, K.2
Liberies, D.A.3
Campbell, J.L.4
-
29
-
-
0026569267
-
The E.coli fis promoter is subject to stringent control and autorregulation
-
Ninnemann,O., Koch,C. and Kahmann,R. (1992) The E.coli fis promoter is subject to stringent control and autorregulation. EMBO J., 11, 1075-1083.
-
(1992)
EMBO J.
, vol.11
, pp. 1075-1083
-
-
Ninnemann, O.1
Koch, C.2
Kahmann, R.3
-
30
-
-
0020554566
-
Regulation of the genes for E.coli DNA gyrase: Homeostatic control of DNA supercoiling
-
Menzel,R. and Gellert,M. (1983) Regulation of the genes for E.coli DNA gyrase: homeostatic control of DNA supercoiling. Cell, 34, 105-113.
-
(1983)
Cell
, vol.34
, pp. 105-113
-
-
Menzel, R.1
Gellert, M.2
-
31
-
-
0033404486
-
A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli
-
Schneider,R., Travers,A., Kutateladze,T. and Muskhelishvili,G. (1999) A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli. Mol. Microbiol., 34, 953-964.
-
(1999)
Mol. Microbiol.
, vol.34
, pp. 953-964
-
-
Schneider, R.1
Travers, A.2
Kutateladze, T.3
Muskhelishvili, G.4
-
32
-
-
0030795165
-
Deletion analysis of the fis promoter region in Escherichia coli: Antagonistic effects of integration host factor and Fis
-
Pratt,T.S., Steiner,T., Feldman,L.S., Walker,K.A. and Osuna,R. (1997) Deletion analysis of the fis promoter region in Escherichia coli: antagonistic effects of integration host factor and Fis. J. Bacteriol., 179, 6367-6377.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 6367-6377
-
-
Pratt, T.S.1
Steiner, T.2
Feldman, L.S.3
Walker, K.A.4
Osuna, R.5
-
33
-
-
0035094252
-
Involvement of H-NS in transpositional recombination mediated by IS1
-
Shiga,Y., Sekine,Y., Kano,Y. and Ohtsubo,E. (2001) Involvement of H-NS in transpositional recombination mediated by IS1. J. Bacteriol., 183, 2476-2484.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2476-2484
-
-
Shiga, Y.1
Sekine, Y.2
Kano, Y.3
Ohtsubo, E.4
-
35
-
-
0032577448
-
IHF modulation of tn10 transposition: Sensory transduction of supercoiling status via a proposed protein-DNA molecular spring
-
Chalmers,R., Guhathakurta,A., Benjamin,H. and Kleckner,N. (1998) IHF modulation of tn10 transposition: sensory transduction of supercoiling status via a proposed protein-DNA molecular spring. Cell, 93, 897-908.
-
(1998)
Cell
, vol.93
, pp. 897-908
-
-
Chalmers, R.1
Guhathakurta, A.2
Benjamin, H.3
Kleckner, N.4
-
36
-
-
0027984239
-
IS231A insertion specificity: Consensus sequence and DNA bending at the target site
-
Hallet,B., Rezsohazy,R., Mahillon,J. and Delcour,J. (1994) IS231A insertion specificity: consensus sequence and DNA bending at the target site. Mol. Microbiol., 14, 131-139.
-
(1994)
Mol. Microbiol.
, vol.14
, pp. 131-139
-
-
Hallet, B.1
Rezsohazy, R.2
Mahillon, J.3
Delcour, J.4
-
37
-
-
0025069971
-
The role of FIS in trans activation of stable RNA operons of E.coli
-
Nilsson,L., Vanet,A., Vijgenboom,E. and Bosch,L. (1990) The role of FIS in trans activation of stable RNA operons of E.coli. EMBO J., 9, 727-734.
-
(1990)
EMBO J.
, vol.9
, pp. 727-734
-
-
Nilsson, L.1
Vanet, A.2
Vijgenboom, E.3
Bosch, L.4
-
38
-
-
0023089714
-
Sequence distributions associated with DNA curvature are found upstream of strong E.coli promoters
-
Plaskon,R.R. and Wartell,R.M. (1987) Sequence distributions associated with DNA curvature are found upstream of strong E.coli promoters. Nucleic Acids Res., 15, 785-796.
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 785-796
-
-
Plaskon, R.R.1
Wartell, R.M.2
-
39
-
-
0025880637
-
FIS-induced bending of a region upstream of the promoter activates transcription of the E.coli thrU (tufB) operon
-
Verbeek,H., Nilsson,L. and Bosch,L. (1991) FIS-induced bending of a region upstream of the promoter activates transcription of the E.coli thrU (tufB) operon. Biochimie, 73, 713-718.
-
(1991)
Biochimie
, vol.73
, pp. 713-718
-
-
Verbeek, H.1
Nilsson, L.2
Bosch, L.3
-
40
-
-
0035688744
-
Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli
-
Hirvonen,C.A., Ross,W., Wozniak,C.E., Marasco,E., Anthony,J.R., Aiyar,S.E., Newburn,V.H. and Gourse,R.L. (2001) Contributions of UP elements and the transcription factor FIS to expression from the seven rrn P1 promoters in Escherichia coli. J Bacteriol., 183, 6305-6314.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 6305-6314
-
-
Hirvonen, C.A.1
Ross, W.2
Wozniak, C.E.3
Marasco, E.4
Anthony, J.R.5
Aiyar, S.E.6
Newburn, V.H.7
Gourse, R.L.8
-
41
-
-
0025115591
-
Closely spaced and divergent promoters for an aminoacyl-tRNA synthetase gene and a tRNA operon in Escherichia coli. Transcriptional and post-transcriptional regulation of gltX, valU and alaW
-
Brun,Y.V., Sanfacon,H., Breton,R. and Lapointe,J. (1990) Closely spaced and divergent promoters for an aminoacyl-tRNA synthetase gene and a tRNA operon in Escherichia coli. Transcriptional and post-transcriptional regulation of gltX, valU and alaW. J. Mol. Biol., 214, 845-864.
-
(1990)
J. Mol. Biol.
, vol.214
, pp. 845-864
-
-
Brun, Y.V.1
Sanfacon, H.2
Breton, R.3
Lapointe, J.4
-
42
-
-
0035076833
-
Roles of Escherichia coli histone-like protein HU in DNA replication: HU-β suppresses the thermosensitivity of dnaA46ts
-
Bahloul,A., Boubrik,F. and Rouviere-Yaniv,J. (2001) Roles of Escherichia coli histone-like protein HU in DNA replication: HU-β suppresses the thermosensitivity of dnaA46ts. Biochimie, 83, 219-229.
-
(2001)
Biochimie
, vol.83
, pp. 219-229
-
-
Bahloul, A.1
Boubrik, F.2
Rouviere-Yaniv, J.3
-
44
-
-
0032796421
-
Multiple control of flagellum biosynthesis in Escherichia coli: Role of H-NS protein and the cyclic AMP catabolite activator protein complex in transcription of the flhDC master operon
-
Soutourina,O., Kolb,A., Krin,E., Laurent-Winter,C., Rimsky,S., Danchin,A. and Bertin,P. (1999) Multiple control of flagellum biosynthesis in Escherichia coli: role of H-NS protein and the cyclic AMP catabolite activator protein complex in transcription of the flhDC master operon. J. Bacteriol., 181, 7500-7508.
-
(1999)
J. Bacteriol.
, vol.181
, pp. 7500-7508
-
-
Soutourina, O.1
Kolb, A.2
Krin, E.3
Laurent-Winter, C.4
Rimsky, S.5
Danchin, A.6
Bertin, P.7
-
45
-
-
0030943084
-
Autogenous and global control of the flagellar master operon, flhD, in Salmonella typhimurium
-
Kutzukake,K. (1997) Autogenous and global control of the flagellar master operon, flhD, in Salmonella typhimurium. Mol. Gen. Genet., 254, 440-448.
-
(1997)
Mol. Gen. Genet.
, vol.254
, pp. 440-448
-
-
Kutzukake, K.1
-
46
-
-
0025312950
-
Sequence-directed curvature of DNA
-
Hagerman,P.J. (1990) Sequence-directed curvature of DNA. Annu. Rev. Biochem., 59, 755-781.
-
(1990)
Annu. Rev. Biochem.
, vol.59
, pp. 755-781
-
-
Hagerman, P.J.1
-
47
-
-
0034744733
-
28-dependent flagellar gene transcription hierarchy of Vibrio cholerae
-
28-dependent flagellar gene transcription hierarchy of Vibrio cholerae. Mol. Microbiol., 39, 1595-1609.
-
(2001)
Mol. Microbiol.
, vol.39
, pp. 1595-1609
-
-
Pouty, M.1
Correa, N.E.2
Klose, K.3
-
48
-
-
0035053888
-
Roles of rpoN, fliA and flgR in expression of flagella in Campylobacter jejuni
-
Jagannathan,A., Constantinidou,C. and Penn,C.W. (2001) Roles of rpoN, fliA and flgR in expression of flagella in Campylobacter jejuni. J. Bacteriol., 183, 2937-2942.
-
(2001)
J. Bacteriol.
, vol.183
, pp. 2937-2942
-
-
Jagannathan, A.1
Constantinidou, C.2
Penn, C.W.3
-
50
-
-
0026470852
-
The Fis protein: It's not just for DNA inversion anymore
-
Finkel,R.A. and Johnson,R.C. (1992) The Fis protein: it's not just for DNA inversion anymore. Mol. Microbiol., 6, 3257-3265.
-
(1992)
Mol. Microbiol.
, vol.6
, pp. 3257-3265
-
-
Finkel, R.A.1
Johnson, R.C.2
-
51
-
-
0036953237
-
DNA topology-mediated control of global gene expression in Escherichia coli
-
Hatfield,G.W. and Benham,C.J. (2002) DNA topology-mediated control of global gene expression in Escherichia coli. Annu. Rev. Genet., 36, 175-203.
-
(2002)
Annu. Rev. Genet.
, vol.36
, pp. 175-203
-
-
Hatfield, G.W.1
Benham, C.J.2
|