메뉴 건너뛰기




Volumn 67, Issue 1, 2006, Pages 162-170

rpoB gene: A target for identification of LAB cocci by PCR-DGGE and melting curves analyses in real time PCR

Author keywords

Cocci; Denaturing gradient gel electrophoresis; Melting curves; Real time PCR RNA polymerase Beta subunit

Indexed keywords

FLUORESCENT DYE;

EID: 33747779728     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2006.03.008     Document Type: Article
Times cited : (32)

References (48)
  • 1
    • 0002665661 scopus 로고
    • Ability of wine lactic acid bacteria to metabolize phenol carboxylic acids
    • Cavin J.F., Andioc V., Etievant P.X., and Divies C. Ability of wine lactic acid bacteria to metabolize phenol carboxylic acids. Am. J. Enol. Vitic. 44 (1993) 76-80
    • (1993) Am. J. Enol. Vitic. , vol.44 , pp. 76-80
    • Cavin, J.F.1    Andioc, V.2    Etievant, P.X.3    Divies, C.4
  • 2
    • 0345725008 scopus 로고    scopus 로고
    • Identification of Carnobacterium, Lactobacillus, Leuconostoc and Pediococcus by rDNA-based techniques
    • Chenoll E., Macian M.C., and Aznar R. Identification of Carnobacterium, Lactobacillus, Leuconostoc and Pediococcus by rDNA-based techniques. Syst. Appl. Microbiol. 25 (2003) 546-556
    • (2003) Syst. Appl. Microbiol. , vol.25 , pp. 546-556
    • Chenoll, E.1    Macian, M.C.2    Aznar, R.3
  • 3
    • 0035511958 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis analysis of the 16 rRNA gene V1 region to monitor the dynamic changes in the bacterial population during the fermentation of Italian sausages
    • Cocolin L., Manzano M., Cantoni C., and Comi G. Denaturing gradient gel electrophoresis analysis of the 16 rRNA gene V1 region to monitor the dynamic changes in the bacterial population during the fermentation of Italian sausages. Appl. Environ. Microbiol. 67 (2001) 5113-5121
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5113-5121
    • Cocolin, L.1    Manzano, M.2    Cantoni, C.3    Comi, G.4
  • 4
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet F. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res. 16 (1988) 10881-10890
    • (1988) Nucleic Acids Res. , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 5
    • 0031839763 scopus 로고    scopus 로고
    • Histamine-producing lactic acid bacteria in wines: early detection, frequency and distribution
    • Coton E., Rollan G.C., Bertrand A., and Lonvaud-Funel A. Histamine-producing lactic acid bacteria in wines: early detection, frequency and distribution. Am. J. Enol. Vitic. 49 (1998) 19-203
    • (1998) Am. J. Enol. Vitic. , vol.49 , pp. 19-203
    • Coton, E.1    Rollan, G.C.2    Bertrand, A.3    Lonvaud-Funel, A.4
  • 6
    • 23044490471 scopus 로고    scopus 로고
    • RpoB-based microbial community analysis avoids limitations inherent in the 16S rRNA gene intraspecies heterogeneity
    • Dahllof I., Baillie H., and Kjelleberg S. RpoB-based microbial community analysis avoids limitations inherent in the 16S rRNA gene intraspecies heterogeneity. Appl. Environ. Microbiol. 40 (2000) 1333-1338
    • (2000) Appl. Environ. Microbiol. , vol.40 , pp. 1333-1338
    • Dahllof, I.1    Baillie, H.2    Kjelleberg, S.3
  • 8
    • 0036865610 scopus 로고    scopus 로고
    • Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer
    • Dobson C.M., Deneer H., Lee S., Hemmingsen S., Glaze S., and Ziola B. Phylogenetic analysis of the genus Pediococcus, including Pediococcus claussenii sp. nov., a novel lactic acid bacterium isolated from beer. Int. J. Syst. Evol. Microbiol. 52 (2002) 2003-2010
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 2003-2010
    • Dobson, C.M.1    Deneer, H.2    Lee, S.3    Hemmingsen, S.4    Glaze, S.5    Ziola, B.6
  • 9
    • 0030974355 scopus 로고    scopus 로고
    • Growth and energetics of Leuconostoc mesenteroides NRRLB-1299 during metabolism of various sugars and their consequences for dextransucrase production
    • Dols M., Chraibi W., Remaud-Simeon M., Lindley N.D., and Monsan P. Growth and energetics of Leuconostoc mesenteroides NRRLB-1299 during metabolism of various sugars and their consequences for dextransucrase production. Appl. Envrion. Microbiol. 63 (1997) 2159-2165
    • (1997) Appl. Envrion. Microbiol. , vol.63 , pp. 2159-2165
    • Dols, M.1    Chraibi, W.2    Remaud-Simeon, M.3    Lindley, N.D.4    Monsan, P.5
  • 10
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: an approach using the bootstrap
    • Felsentein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsentein, J.1
  • 11
    • 0001430252 scopus 로고
    • DNA fragments differing by single base pair substitutions are separated in denaturing gradient gels: correspondence with melting theory
    • Fisher S.G., and Lerman L.S. DNA fragments differing by single base pair substitutions are separated in denaturing gradient gels: correspondence with melting theory. Proc. Natl. Acad. Sci. U.S.A. 80 (1983) 1579-1583
    • (1983) Proc. Natl. Acad. Sci. U.S.A. , vol.80 , pp. 1579-1583
    • Fisher, S.G.1    Lerman, L.S.2
  • 12
    • 0013617475 scopus 로고    scopus 로고
    • Evaluation de l'établissement de levains malolactiques au sein de la microflore bactérienne indigène
    • Gindreau E., Joyeux A., De Revel G., Claisse O., and Lonvaud-Funel A. Evaluation de l'établissement de levains malolactiques au sein de la microflore bactérienne indigène. J. Int. Sci. Vigne Vin 31 (1997) 197-202
    • (1997) J. Int. Sci. Vigne Vin , vol.31 , pp. 197-202
    • Gindreau, E.1    Joyeux, A.2    De Revel, G.3    Claisse, O.4    Lonvaud-Funel, A.5
  • 13
    • 0343090500 scopus 로고    scopus 로고
    • Effect of tyrosine on tyramine formation during beer fermentation
    • Izquierdo-Pulido M., Mariné-Font A., and Vidal-Carou M.C. Effect of tyrosine on tyramine formation during beer fermentation. Food Chem. 70 (2000) 329-332
    • (2000) Food Chem. , vol.70 , pp. 329-332
    • Izquierdo-Pulido, M.1    Mariné-Font, A.2    Vidal-Carou, M.C.3
  • 14
    • 1842457611 scopus 로고    scopus 로고
    • A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis
    • Janse I., Bok J., and Zwart G. A simple remedy against artifactual double bands in denaturing gradient gel electrophoresis. J. Microbiol. Methods 57 (2004) 279-281
    • (2004) J. Microbiol. Methods , vol.57 , pp. 279-281
    • Janse, I.1    Bok, J.2    Zwart, G.3
  • 15
    • 0036216132 scopus 로고    scopus 로고
    • Evaluation of a homemade SYBR green I reaction mixture for real time PCR quantification of gene expression
    • Karsai A., Muller S., Platz S., and Hauser M.T. Evaluation of a homemade SYBR green I reaction mixture for real time PCR quantification of gene expression. Biotechniques 32 (2002) 790-796
    • (2002) Biotechniques , vol.32 , pp. 790-796
    • Karsai, A.1    Muller, S.2    Platz, S.3    Hauser, M.T.4
  • 16
    • 0013946666 scopus 로고    scopus 로고
    • Acetaldehyde utilisation by Leuconostoc species
    • Keenan T.W., Lindsay R.C., and Day E.A. Acetaldehyde utilisation by Leuconostoc species. Appl. Microbiol. 14 (1996) 802-806
    • (1996) Appl. Microbiol. , vol.14 , pp. 802-806
    • Keenan, T.W.1    Lindsay, R.C.2    Day, E.A.3
  • 17
    • 33747778649 scopus 로고    scopus 로고
    • Kumar, S., Tanura, K., Jakobsen, I.B., Masatoshi, N., 2001. MEGA2: Molecular Evolutionnary Genetics Analysis software, Arizona State University, Tempe, Arizona USA.
  • 18
    • 0000164841 scopus 로고
    • Techniques simplifiées pour le dénombrement et l'identification des micro-organismes vivants dans les moûts et les vins
    • Lafon-Lafourcade S., and Joyeux A. Techniques simplifiées pour le dénombrement et l'identification des micro-organismes vivants dans les moûts et les vins. Conn. Vigne Vin 13 (1979) 295-310
    • (1979) Conn. Vigne Vin , vol.13 , pp. 295-310
    • Lafon-Lafourcade, S.1    Joyeux, A.2
  • 19
    • 0032846740 scopus 로고    scopus 로고
    • Lactic acid bacteria in the quality improvement and depreciation of wine
    • Lonvaud-Funel A. Lactic acid bacteria in the quality improvement and depreciation of wine. Antonie Leeuwenhoek 76 (1999) 317-331
    • (1999) Antonie Leeuwenhoek , vol.76 , pp. 317-331
    • Lonvaud-Funel, A.1
  • 20
    • 0025993435 scopus 로고
    • Specific enumeration of lactic acid bacteria in fermenting grape must and wine by colony hybridisation with non-isotopic DNA-probes
    • Lonvaud-Funel A., Joyeux A., and Ledoux O. Specific enumeration of lactic acid bacteria in fermenting grape must and wine by colony hybridisation with non-isotopic DNA-probes. J. Appl. Microbiol. 71 (1991) 501-508
    • (1991) J. Appl. Microbiol. , vol.71 , pp. 501-508
    • Lonvaud-Funel, A.1    Joyeux, A.2    Ledoux, O.3
  • 21
    • 0028972966 scopus 로고
    • Polysaccharide production by Pediococcus pentosaceus from wine
    • Manca de Nadra M., and Strasser de Saad A. Polysaccharide production by Pediococcus pentosaceus from wine. Int. J. Food Microbiol. 27 (1995) 101-106
    • (1995) Int. J. Food Microbiol. , vol.27 , pp. 101-106
    • Manca de Nadra, M.1    Strasser de Saad, A.2
  • 22
    • 21244451548 scopus 로고    scopus 로고
    • Culture-dependent and culture independent qualitative analysis of probiotic products claimed to contain bifidobacteria
    • Masco L., Huys G., De Brandt E., Temmerman R., and Swings J. Culture-dependent and culture independent qualitative analysis of probiotic products claimed to contain bifidobacteria. Int. J. Food Microbiol. 102 (2005) 211-230
    • (2005) Int. J. Food Microbiol. , vol.102 , pp. 211-230
    • Masco, L.1    Huys, G.2    De Brandt, E.3    Temmerman, R.4    Swings, J.5
  • 23
    • 0030669211 scopus 로고    scopus 로고
    • rpoB sequence analysis as a novel basis for bacterial identification
    • Mollet C., Drancourt M., and Raoult D. rpoB sequence analysis as a novel basis for bacterial identification. Mol. Microbiol. 26 (1997) 1005-1011
    • (1997) Mol. Microbiol. , vol.26 , pp. 1005-1011
    • Mollet, C.1    Drancourt, M.2    Raoult, D.3
  • 24
    • 33747753794 scopus 로고    scopus 로고
    • Sensitive detection of Borellia burdorferi sensu lacto DNA and differentiation of Legionella DNA in respiratory specimens
    • Mommert S., Gutzmer R., Kapp A., and Werfel T. Sensitive detection of Borellia burdorferi sensu lacto DNA and differentiation of Legionella DNA in respiratory specimens. J. Clin. Microbiol 40 (2001) 3237-3244
    • (2001) J. Clin. Microbiol , vol.40 , pp. 3237-3244
    • Mommert, S.1    Gutzmer, R.2    Kapp, A.3    Werfel, T.4
  • 25
    • 15544371286 scopus 로고    scopus 로고
    • Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis
    • Monis P.T., Giglio S., and Saint C.P. Comparison of SYTO9 and SYBR Green I for real-time polymerase chain reaction and investigation of the effect of dye concentration on amplification and DNA melting curve analysis. Anal. Biochem. 340 (2005) 24-34
    • (2005) Anal. Biochem. , vol.340 , pp. 24-34
    • Monis, P.T.1    Giglio, S.2    Saint, C.P.3
  • 26
    • 21244496816 scopus 로고    scopus 로고
    • Application of SYBR green real-time PCR assay for specific detection of Salmonella spp. in diary farm environmental samples
    • Nam H.M., Srinivasa V., Gillespie B.E., Murinda S.E., and Oliver S.P. Application of SYBR green real-time PCR assay for specific detection of Salmonella spp. in diary farm environmental samples. Int. J. Food Microbiol. 102 (2005) 161-171
    • (2005) Int. J. Food Microbiol. , vol.102 , pp. 161-171
    • Nam, H.M.1    Srinivasa, V.2    Gillespie, B.E.3    Murinda, S.E.4    Oliver, S.P.5
  • 27
    • 0033990382 scopus 로고    scopus 로고
    • Effects of ethidium bromide and SYBR green I on different polymerase chain reaction systems
    • Nath K., Sarosy J.W., Hahn J., and Di como C.J. Effects of ethidium bromide and SYBR green I on different polymerase chain reaction systems. J. Biochem. Biophys. Methods 42 (2000) 15-29
    • (2000) J. Biochem. Biophys. Methods , vol.42 , pp. 15-29
    • Nath, K.1    Sarosy, J.W.2    Hahn, J.3    Di como, C.J.4
  • 29
    • 13244270232 scopus 로고    scopus 로고
    • Aerobic glycerol catabolism by Pediococcus pentosaceus isolated from wine
    • Pasteris S.E., and Strasser de Saad A.M. Aerobic glycerol catabolism by Pediococcus pentosaceus isolated from wine. Food Microbiol. 22 (2005) 399-407
    • (2005) Food Microbiol. , vol.22 , pp. 399-407
    • Pasteris, S.E.1    Strasser de Saad, A.M.2
  • 30
    • 0002052175 scopus 로고
    • Characterization of wine lactic acid bacteria: single broth culture for tests of heterofermentation, mannitol from fructose and ammonia from arginine
    • Pilone G.J., Clayton M.G., and van Duivenboden R.J. Characterization of wine lactic acid bacteria: single broth culture for tests of heterofermentation, mannitol from fructose and ammonia from arginine. Am. J. Enol. Vitic. 42 (1991) 153-157
    • (1991) Am. J. Enol. Vitic. , vol.42 , pp. 153-157
    • Pilone, G.J.1    Clayton, M.G.2    van Duivenboden, R.J.3
  • 31
    • 0037445743 scopus 로고    scopus 로고
    • Thermal inactivation of Pediococcus sp. In simulated apple cider during high temperature short time pasteurization
    • Piyasena P., McKellar R.C., and Barlett F.M. Thermal inactivation of Pediococcus sp. In simulated apple cider during high temperature short time pasteurization. Int. J. Food Microbiol. 82 (2003) 25-31
    • (2003) Int. J. Food Microbiol. , vol.82 , pp. 25-31
    • Piyasena, P.1    McKellar, R.C.2    Barlett, F.M.3
  • 32
    • 0034888442 scopus 로고    scopus 로고
    • Development of conventional and real time PCR assays for detection of Legionella DNA in respiratory specimens
    • Rantakokko-Javala K., and Jalava J. Development of conventional and real time PCR assays for detection of Legionella DNA in respiratory specimens. J. Clin. Microbiol. 39 (2001) 2904-2910
    • (2001) J. Clin. Microbiol. , vol.39 , pp. 2904-2910
    • Rantakokko-Javala, K.1    Jalava, J.2
  • 33
    • 1842535530 scopus 로고    scopus 로고
    • The rpoB gene as a target for PCR-DGGE analysis to follow lactic acid bacterial population dynamics during food fermentations
    • Rantsiou K., Comi G., and Cocolin L. The rpoB gene as a target for PCR-DGGE analysis to follow lactic acid bacterial population dynamics during food fermentations. Food Microbiol. 21 (2004) 481-487
    • (2004) Food Microbiol. , vol.21 , pp. 481-487
    • Rantsiou, K.1    Comi, G.2    Cocolin, L.3
  • 34
    • 0031568919 scopus 로고    scopus 로고
    • Product differentiation by analysis of DNA melting curves during the polymerase chain reaction
    • Ririe K.M., Rasmussen R.P., and Wittwer C.T. Product differentiation by analysis of DNA melting curves during the polymerase chain reaction. Anal. Biochem. 245 (1997) 154-160
    • (1997) Anal. Biochem. , vol.245 , pp. 154-160
    • Ririe, K.M.1    Rasmussen, R.P.2    Wittwer, C.T.3
  • 35
    • 0141482264 scopus 로고    scopus 로고
    • 16S-ADRA, a tool for identification of lactic acid bacteria isolated from grape must and wine
    • Rodas A.M., Ferrer S., and Pardo I. 16S-ADRA, a tool for identification of lactic acid bacteria isolated from grape must and wine. Syst. Appl. Microbiol. 26 (2003) 412-422
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 412-422
    • Rodas, A.M.1    Ferrer, S.2    Pardo, I.3
  • 36
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 39
    • 0000023099 scopus 로고
    • Attachment of a 40-base pair G+C rich sequence (GC clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes
    • Sheffield V.C., Cox D.R., Lerman L.S., and Myers R.M. Attachment of a 40-base pair G+C rich sequence (GC clamp) to genomic DNA fragments by the polymerase chain reaction results in improved detection of single-base changes. Proc. Natl. Acad. Sci. 86 (1989) 232-236
    • (1989) Proc. Natl. Acad. Sci. , vol.86 , pp. 232-236
    • Sheffield, V.C.1    Cox, D.R.2    Lerman, L.S.3    Myers, R.M.4
  • 41
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: formation, consequence, and elimination by 'reconditioning PCR'
    • Thompson J.R., Marcelino L.A., and et Polz. Heteroduplexes in mixed-template amplifications: formation, consequence, and elimination by 'reconditioning PCR'. Nucleic Acids Res. 30 (2002) 2083-2088
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    et, Polz.3
  • 42
    • 21844458909 scopus 로고    scopus 로고
    • Ethyl carbamate production by selected yeasts and lactic acid bacteria in red wine
    • Uthurry C.A., Suarez Lepe J.A., Lombardero J., and Garcia Del Hierro J.R. Ethyl carbamate production by selected yeasts and lactic acid bacteria in red wine. Food Chem. 94 (2005) 262-270
    • (2005) Food Chem. , vol.94 , pp. 262-270
    • Uthurry, C.A.1    Suarez Lepe, J.A.2    Lombardero, J.3    Garcia Del Hierro, J.R.4
  • 44
    • 11144335486 scopus 로고    scopus 로고
    • A putative glucan synthase gene dps detected in exopolysaccharide producing by Pediococcus damnosus and Oenococcus oeni strains isolated from wine and cider
    • Walling E., Gindreau E., and Lonvaud-Funel A. A putative glucan synthase gene dps detected in exopolysaccharide producing by Pediococcus damnosus and Oenococcus oeni strains isolated from wine and cider. Int. J. Food Microbiol. 48 (2005) 53-62
    • (2005) Int. J. Food Microbiol. , vol.48 , pp. 53-62
    • Walling, E.1    Gindreau, E.2    Lonvaud-Funel, A.3
  • 45
    • 0002031674 scopus 로고
    • Some biochemical and flavour aspects of lactic acid bacteria in ciders and alcoholic beverages
    • Carr G., Cutting, and Whiting G.C. (Eds), Academic Press, London
    • Whiting G.C. Some biochemical and flavour aspects of lactic acid bacteria in ciders and alcoholic beverages. In: Carr G., Cutting, and Whiting G.C. (Eds). Lactic Acid Bacteria in Beverages and Food (1975), Academic Press, London 69-86
    • (1975) Lactic Acid Bacteria in Beverages and Food , pp. 69-86
    • Whiting, G.C.1
  • 46
    • 0342952786 scopus 로고
    • Studies on lactobacilli causing ropiness in beer
    • Williamson D.H. Studies on lactobacilli causing ropiness in beer. J. Appl. Bacteriol. 22 (1959) 392-402
    • (1959) J. Appl. Bacteriol. , vol.22 , pp. 392-402
    • Williamson, D.H.1
  • 47
    • 0031022694 scopus 로고    scopus 로고
    • Continuous fluorescence monitoring of rapid cycle DNA amplification
    • Wittwer C.T., Herrmann M.G., Moss A.A., and Rasmussen R.P. Continuous fluorescence monitoring of rapid cycle DNA amplification. Biotechniques 22 (1997) 130-138
    • (1997) Biotechniques , vol.22 , pp. 130-138
    • Wittwer, C.T.1    Herrmann, M.G.2    Moss, A.A.3    Rasmussen, R.P.4
  • 48
    • 0033858843 scopus 로고    scopus 로고
    • A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube
    • Xu H.X., Kawamura Y., Li N., Zhao L., Li T.M., Li Z.Y., Shu T., and Ezaki T. A rapid method for determining the G+C content of bacterial chromosomes by monitoring fluorescence intensity during DNA denaturation in a capillary tube. Int. J. Syst. Evol. Microbiol. 50 (2000) 1463-1469
    • (2000) Int. J. Syst. Evol. Microbiol. , vol.50 , pp. 1463-1469
    • Xu, H.X.1    Kawamura, Y.2    Li, N.3    Zhao, L.4    Li, T.M.5    Li, Z.Y.6    Shu, T.7    Ezaki, T.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.