메뉴 건너뛰기




Volumn 41, Issue 1, 2006, Pages 79-90

Exonuclease-mediated ELISA-like assay for detecting DNA-binding activity of transcription factors: Measurement of activated NF-κB

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODIES; BIOTECHNOLOGY; DNA; ENZYME KINETICS; ESTERS; PROTEINS;

EID: 33747592634     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/000112218     Document Type: Article
Times cited : (9)

References (57)
  • 1
    • 0022930702 scopus 로고
    • Inducibility of immunoglobulin enhancer-binding protein NF-κB by a post-translational mechanism
    • Sen, R. and D. Baltimore. 1986. Inducibility of immunoglobulin enhancer-binding protein NF-κB by a post-translational mechanism. Cell 47:921-928.
    • (1986) Cell , vol.47 , pp. 921-928
    • Sen, R.1    Baltimore, D.2
  • 2
    • 0030271387 scopus 로고    scopus 로고
    • NF-κB: Ten years after
    • Baeuerle, P.A. and D. Baltimore. 1996. NF-κB: ten years after. Cell 87:13-20.
    • (1996) Cell , vol.87 , pp. 13-20
    • Baeuerle, P.A.1    Baltimore, D.2
  • 3
    • 0024475227 scopus 로고
    • NF-κB: A pleiotropic mediator of inducible and tissue-specific gene control
    • Lenardo, M.J. and D. Baltimore. 1989. NF-κB: a pleiotropic mediator of inducible and tissue-specific gene control. Cell 58:227-229.
    • (1989) Cell , vol.58 , pp. 227-229
    • Lenardo, M.J.1    Baltimore, D.2
  • 4
    • 0029874138 scopus 로고    scopus 로고
    • The NF-kappa B and 1 kappa B proteins: New discoveries and insights
    • Baldwin, A.S., Jr. 1996. The NF-kappa B and 1 kappa B proteins: new discoveries and insights. Annu. Rev. Immunol. 14:649-681.
    • (1996) Annu. Rev. Immunol , vol.14 , pp. 649-681
    • Baldwin Jr., A.S.1
  • 5
    • 0035174615 scopus 로고    scopus 로고
    • Series introduction: The transcription factor NF-kappaB and human disease
    • Baldwin, A.S., Jr. 2001. Series introduction: the transcription factor NF-kappaB and human disease. J. Clin. Invest. 107:3-6.
    • (2001) J. Clin. Invest , vol.107 , pp. 3-6
    • Baldwin Jr., A.S.1
  • 6
    • 0033596126 scopus 로고    scopus 로고
    • Diverse agents act at multiple levels to inhibit the Rel/NF-kappa B signal transduction pathway
    • Epinat, J.C., E.L. Dvorin, and T.D. Gilmore. 1999. Diverse agents act at multiple levels to inhibit the Rel/NF-kappa B signal transduction pathway. Oncogene 18:6896-6909.
    • (1999) Oncogene , vol.18 , pp. 6896-6909
    • Epinat, J.C.1    Dvorin, E.L.2    Gilmore, T.D.3
  • 7
    • 0034283837 scopus 로고    scopus 로고
    • The Rel/NF- kappa B family: Friend and foe
    • Perkins, N.D. 2000. The Rel/NF- kappa B family: friend and foe. Trends Biochem. Sci. 25:434-440.
    • (2000) Trends Biochem. Sci , vol.25 , pp. 434-440
    • Perkins, N.D.1
  • 8
    • 85047699198 scopus 로고    scopus 로고
    • Nuclear transcription factor-kappaB as a target for cancer drug development
    • Garg, A. and B.B. Aggarwal. 2002. Nuclear transcription factor-kappaB as a target for cancer drug development. Leukemia 16:1053-1068.
    • (2002) Leukemia , vol.16 , pp. 1053-1068
    • Garg, A.1    Aggarwal, B.B.2
  • 9
    • 0026774239 scopus 로고
    • Selection of optimal kappaB/Rel DNA-binding motifs: Interaction of both subunits of NF-kappa B with DNA is required for transcriptional activation
    • Kunsch, C., S.M. Ruben, and C.A. Rosen. 1992. Selection of optimal kappaB/Rel DNA-binding motifs: interaction of both subunits of NF-kappa B with DNA is required for transcriptional activation. Mol. Cell. Biol. 12:4412-4421.
    • (1992) Mol. Cell. Biol , vol.12 , pp. 4412-4421
    • Kunsch, C.1    Ruben, S.M.2    Rosen, C.A.3
  • 10
    • 0028579755 scopus 로고
    • Structural and functional analysis of NF- kappa B. Determinants of DNA binding specificity and protein interaction
    • Schmid, R.M., S. Liptay, J.C. Betts, and G.J. Nabel. 1994. Structural and functional analysis of NF- kappa B. Determinants of DNA binding specificity and protein interaction. J. Biol. Chem. 269:32162-32167.
    • (1994) J. Biol. Chem , vol.269 , pp. 32162-32167
    • Schmid, R.M.1    Liptay, S.2    Betts, J.C.3    Nabel, G.J.4
  • 12
    • 15444377989 scopus 로고    scopus 로고
    • Development of a high-throughput plate-based chemiluminescent transcription factor assay
    • Rosenau, C., D. Emery, B. Kaboord, and M.W. Qoronfleh. 2004. Development of a high-throughput plate-based chemiluminescent transcription factor assay. J. Biomol. Screen. 9:334-342.
    • (2004) J. Biomol. Screen , vol.9 , pp. 334-342
    • Rosenau, C.1    Emery, D.2    Kaboord, B.3    Qoronfleh, M.W.4
  • 14
    • 19744382860 scopus 로고    scopus 로고
    • Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins
    • Wang, J.K., T.X. Li, X.Y. Guo, and Z.H. Lu. 2005. Exonuclease III protection assay with FRET probe for detecting DNA-binding proteins. Nucleic Acids Res. 33:e23.
    • (2005) Nucleic Acids Res , vol.33
    • Wang, J.K.1    Li, T.X.2    Guo, X.Y.3    Lu, Z.H.4
  • 15
    • 0030610362 scopus 로고    scopus 로고
    • A cytokine-responsive IkappaB kinase that activates the transcription factor NF- kappaB
    • DiDonato, J.A., M. Hayakawa, D.M. Rothwarf, E. Zandi, and M. Karin. 1997. A cytokine-responsive IkappaB kinase that activates the transcription factor NF- kappaB. Nature 388:548-554.
    • (1997) Nature , vol.388 , pp. 548-554
    • DiDonato, J.A.1    Hayakawa, M.2    Rothwarf, D.M.3    Zandi, E.4    Karin, M.5
  • 16
    • 0030791042 scopus 로고    scopus 로고
    • Transcription factors as activators of gene transcription: AP-1 and NF-kappa B
    • Adcock, I.M. 1997. Transcription factors as activators of gene transcription: AP-1 and NF-kappa B. Monaldi Arch. Chest Dis. 52:178-186.
    • (1997) Monaldi Arch. Chest Dis , vol.52 , pp. 178-186
    • Adcock, I.M.1
  • 17
    • 0035986604 scopus 로고    scopus 로고
    • Activation of stress response by ionomycin in rat hepatoma cells
    • Sreedhar, A.S. and U.K. Srinivas. 2002. Activation of stress response by ionomycin in rat hepatoma cells. J. Cell. Biochem. 86:154-161.
    • (2002) J. Cell. Biochem , vol.86 , pp. 154-161
    • Sreedhar, A.S.1    Srinivas, U.K.2
  • 18
    • 0018816003 scopus 로고
    • Exonuclease III of Escherichia coli K-12, an AP endonuclease
    • Rogers, S.G. and B. Weiss. 1980. Exonuclease III of Escherichia coli K-12, an AP endonuclease. Methods Enzymol. 65:201-211.
    • (1980) Methods Enzymol , vol.65 , pp. 201-211
    • Rogers, S.G.1    Weiss, B.2
  • 19
    • 0021878025 scopus 로고
    • An exonuclease protection assay reveals heat-shock element and TATA box binding proteins in crude nuclear extracts
    • Wu, C. 1985. An exonuclease protection assay reveals heat-shock element and TATA box binding proteins in crude nuclear extracts. Nature 317:84-87.
    • (1985) Nature , vol.317 , pp. 84-87
    • Wu, C.1
  • 20
    • 0023572209 scopus 로고
    • Human proto-oncogene c-jun encodes a DNA binding protein with structural and functional properties of transcription factor AP-1
    • Bohmann, D., T.J. Bos, A. Admon, T. Nishimura, P.K. Vogt, and R. Tjian. 1987. Human proto-oncogene c-jun encodes a DNA binding protein with structural and functional properties of transcription factor AP-1. Science 238:1386-1392.
    • (1987) Science , vol.238 , pp. 1386-1392
    • Bohmann, D.1    Bos, T.J.2    Admon, A.3    Nishimura, T.4    Vogt, P.K.5    Tjian, R.6
  • 21
    • 0024797655 scopus 로고
    • The basic region of Fos mediates specific DNA binding
    • Nakabeppu, Y. and D. Nathans. 1989. The basic region of Fos mediates specific DNA binding. EMBO J. 8:3833-3841.
    • (1989) EMBO J , vol.8 , pp. 3833-3841
    • Nakabeppu, Y.1    Nathans, D.2
  • 22
    • 0019303186 scopus 로고
    • The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I
    • Wu, C. 1980. The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I. Nature 286:854-860.
    • (1980) Nature , vol.286 , pp. 854-860
    • Wu, C.1
  • 23
    • 0021325711 scopus 로고
    • Two protein-binding sites in chromatin implicated in the activation of heat-shock genes
    • Wu, C. 1984. Two protein-binding sites in chromatin implicated in the activation of heat-shock genes. Nature 309:229-234.
    • (1984) Nature , vol.309 , pp. 229-234
    • Wu, C.1
  • 24
    • 0023462744 scopus 로고
    • Mutational and in vitro protein-binding studies on centromere DNA from Saccharomyces cerevisiae
    • Ng, R. and J. Carbon. 1987. Mutational and in vitro protein-binding studies on centromere DNA from Saccharomyces cerevisiae. Mol. Cell. Biol. 7:4522-4534.
    • (1987) Mol. Cell. Biol , vol.7 , pp. 4522-4534
    • Ng, R.1    Carbon, J.2
  • 25
    • 0023715223 scopus 로고
    • TATA box-dependent protein-DNA interactions are detected on heat shock and histone gene promoters in nuclear extracts derived from Drosophila melanogaster embryos
    • Gilmour, D.S., T.J. Dietz, and S.C.R. Elgin. 1988. TATA box-dependent protein-DNA interactions are detected on heat shock and histone gene promoters in nuclear extracts derived from Drosophila melanogaster embryos. Mol. Cell. Biol. 8:3204-3214.
    • (1988) Mol. Cell. Biol , vol.8 , pp. 3204-3214
    • Gilmour, D.S.1    Dietz, T.J.2    Elgin, S.C.R.3
  • 26
    • 0024356877 scopus 로고
    • HeLa nuclear protein recognizing DNA termini and translocating on DNA forming a regular DNA-multimeric protein complex
    • de Vries, E., W. van Driel, W.G. Bergsma, A.C. Arnberg, and P.C. van der Vliet. 1989. HeLa nuclear protein recognizing DNA termini and translocating on DNA forming a regular DNA-multimeric protein complex. J. Mol. Biol. 208:65-78.
    • (1989) J. Mol. Biol , vol.208 , pp. 65-78
    • de Vries, E.1    van Driel, W.2    Bergsma, W.G.3    Arnberg, A.C.4    van der Vliet, P.C.5
  • 27
    • 0021253525 scopus 로고
    • Unidirectional digestion with exonuclease 111 creates targeted break-points for DNA sequencing
    • Henikoff, S. 1984. Unidirectional digestion with exonuclease 111 creates targeted break-points for DNA sequencing. Gene 28:351-359.
    • (1984) Gene , vol.28 , pp. 351-359
    • Henikoff, S.1
  • 28
    • 0020490427 scopus 로고
    • New rapid methods for DNA sequencing based on exo-nuclease III digestion followed by repair synthesis
    • Guo, L.H. and R. Wu. 1982. New rapid methods for DNA sequencing based on exo-nuclease III digestion followed by repair synthesis. Nucleic Acids Res. 10:2065-2084.
    • (1982) Nucleic Acids Res , vol.10 , pp. 2065-2084
    • Guo, L.H.1    Wu, R.2
  • 29
    • 0023929638 scopus 로고
    • A simple and rapid method for the selection of oligodeoxynucleotide-directed mutants
    • Vandeyar, M., M.P. Weiner, C. Hutton, and C. Batt. 1988. A simple and rapid method for the selection of oligodeoxynucleotide-directed mutants. Gene 65:129-133.
    • (1988) Gene , vol.65 , pp. 129-133
    • Vandeyar, M.1    Weiner, M.P.2    Hutton, C.3    Batt, C.4
  • 30
    • 0030753178 scopus 로고    scopus 로고
    • Ligation independent cloning irrespective of restriction site compatibility
    • Li, C. and R.M. Evans. 1997. Ligation independent cloning irrespective of restriction site compatibility. Nucleic Acids Res. 25:4165-4166.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4165-4166
    • Li, C.1    Evans, R.M.2
  • 31
    • 0018874853 scopus 로고
    • Mapping of SV40 DNA replication origin region binding sites for the SV40 T antigen by protection against exonuclease III digestion
    • Shalloway, D., T. Kleinberger, and D.M. Livingston. 1980. Mapping of SV40 DNA replication origin region binding sites for the SV40 T antigen by protection against exonuclease III digestion. Cell 20:411-422.
    • (1980) Cell , vol.20 , pp. 411-422
    • Shalloway, D.1    Kleinberger, T.2    Livingston, D.M.3
  • 32
    • 0018867360 scopus 로고
    • Escherichia coli RNA polymerase interacts homologously with two different promoters
    • Siebenlist, U., R.B. Simpson, and W. Gilbert. 1980. Escherichia coli RNA polymerase interacts homologously with two different promoters. Cell 20:269-281.
    • (1980) Cell , vol.20 , pp. 269-281
    • Siebenlist, U.1    Simpson, R.B.2    Gilbert, W.3
  • 33
    • 0010291050 scopus 로고
    • Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7
    • Siebenlist, U. and W. Gilbert. 1980. Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7. Proc. Natl. Acad. Sci. USA 77:122-126.
    • (1980) Proc. Natl. Acad. Sci. USA , vol.77 , pp. 122-126
    • Siebenlist, U.1    Gilbert, W.2
  • 35
    • 0025325508 scopus 로고
    • Evidence for a stem cell-specific repressor of Moloney murine leukemia virus expression in embryonic carcinoma cells
    • Loh, T.P., L.L. Sievert, and R.W. Scott. 1990. Evidence for a stem cell-specific repressor of Moloney murine leukemia virus expression in embryonic carcinoma cells. Mol. Cell. Biol. 10:4045-4057.
    • (1990) Mol. Cell. Biol , vol.10 , pp. 4045-4057
    • Loh, T.P.1    Sievert, L.L.2    Scott, R.W.3
  • 36
    • 0024420356 scopus 로고
    • Nuclear factors specifically bind to upstream sequences of a Xenopus laevis ribosomal protein gene promoter
    • Carnevali, F., C. La Porta, V. Ilardi, and E. Beccari. 1989. Nuclear factors specifically bind to upstream sequences of a Xenopus laevis ribosomal protein gene promoter. Nucleic Acids Res. 17:8171-8184.
    • (1989) Nucleic Acids Res , vol.17 , pp. 8171-8184
    • Carnevali, F.1    La Porta, C.2    Ilardi, V.3    Beccari, E.4
  • 37
    • 0035227217 scopus 로고    scopus 로고
    • Metzger, W. and H. Heumann. 2001. Footprinting with exonuclease III, p. 39-47. In T. Moss (Ed.), Methods in Molecular Biology, 148. DNA-Protein Interactions: Principles and Protocols, 2nd ed. Humana Press, Totowa, NJ.
    • Metzger, W. and H. Heumann. 2001. Footprinting with exonuclease III, p. 39-47. In T. Moss (Ed.), Methods in Molecular Biology, vol. 148. DNA-Protein Interactions: Principles and Protocols, 2nd ed. Humana Press, Totowa, NJ.
  • 39
    • 0034731285 scopus 로고    scopus 로고
    • Chronic pharmacological treatment with certain antidepressants alters the expression and DNA-binding activity of transcription factor AP-2
    • Damberg, M., J. Ekblom, and L. Oreland. 2000. Chronic pharmacological treatment with certain antidepressants alters the expression and DNA-binding activity of transcription factor AP-2. Life Sci. 68:669-678.
    • (2000) Life Sci , vol.68 , pp. 669-678
    • Damberg, M.1    Ekblom, J.2    Oreland, L.3
  • 41
    • 0032980573 scopus 로고    scopus 로고
    • Postnatal growth failure, short life span, and early onset of cellular senescence and subsequent immortalization in mice lacking the xeroderma pigmentosum group G gene
    • Harada, Y.N., N. Shiomi, M. Koike, M. Ikawa, M. Okabe, S. Hirota, Y. Kitamura, M. Kitagawa, et al. 1999. Postnatal growth failure, short life span, and early onset of cellular senescence and subsequent immortalization in mice lacking the xeroderma pigmentosum group G gene. Mol. Cell. Biol. 19:2366-2372.
    • (1999) Mol. Cell. Biol , vol.19 , pp. 2366-2372
    • Harada, Y.N.1    Shiomi, N.2    Koike, M.3    Ikawa, M.4    Okabe, M.5    Hirota, S.6    Kitamura, Y.7    Kitagawa, M.8
  • 43
    • 1942506067 scopus 로고    scopus 로고
    • The tumor suppressor p53 down-regulates glucose transporters GLUT1 and GLUT4 gene expression
    • Schwarzenberg-Bar-Yoseph, F., M. Armori, and E. Karnieli. 2004. The tumor suppressor p53 down-regulates glucose transporters GLUT1 and GLUT4 gene expression. Cancer Res. 64:2627-2633.
    • (2004) Cancer Res , vol.64 , pp. 2627-2633
    • Schwarzenberg-Bar-Yoseph, F.1    Armori, M.2    Karnieli, E.3
  • 45
    • 0032401801 scopus 로고    scopus 로고
    • An enzyme-linked immunosorbent assay for the detection of agents which interfere with the DNA binding activities of transcription factors-exemplified by NF-IL6
    • McKay, I.A., L. Kirby, E.V. Volyanik, V. Kumar, P.W. Wong, and S.A. Bustin. 1998. An enzyme-linked immunosorbent assay for the detection of agents which interfere with the DNA binding activities of transcription factors-exemplified by NF-IL6. Anal. Biochem. 265:28-34.
    • (1998) Anal. Biochem , vol.265 , pp. 28-34
    • McKay, I.A.1    Kirby, L.2    Volyanik, E.V.3    Kumar, V.4    Wong, P.W.5    Bustin, S.A.6
  • 46
    • 0031213898 scopus 로고    scopus 로고
    • Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium
    • Benotmane, A.M., M.F. Hoylaerts, D. Collen, and A. Belayew. 1997. Nonisotopic quantitative analysis of protein-DNA interactions at equilibrium. Anal. Biochem. 250:181-185.
    • (1997) Anal. Biochem , vol.250 , pp. 181-185
    • Benotmane, A.M.1    Hoylaerts, M.F.2    Collen, D.3    Belayew, A.4
  • 47
    • 0028833764 scopus 로고
    • Nonradioactive assay for sequence-specific DNA binding proteins
    • Gubler, M.L. and P. Abarzua. 1995. Nonradioactive assay for sequence-specific DNA binding proteins. BioTechniques 18:1008-1014.
    • (1995) BioTechniques , vol.18 , pp. 1008-1014
    • Gubler, M.L.1    Abarzua, P.2
  • 49
    • 0033028741 scopus 로고    scopus 로고
    • Quantifying DNA-protein interactions by double-stranded DNA arrays
    • Bulyk, M.L., E. Gentalen, D.J. Lockhart, and G.M. Church. 1999. Quantifying DNA-protein interactions by double-stranded DNA arrays. Nat. Biotechnol. 17:573-577.
    • (1999) Nat. Biotechnol , vol.17 , pp. 573-577
    • Bulyk, M.L.1    Gentalen, E.2    Lockhart, D.J.3    Church, G.M.4
  • 50
    • 0035912721 scopus 로고    scopus 로고
    • Exploring the DNA-binding specificities of zinc fingers with DNA microarrays
    • Bulyk, M.L., X. Huang, Y. Choo, and G.M. Church. 2001. Exploring the DNA-binding specificities of zinc fingers with DNA microarrays. Proc. Natl. Acad. Sci. USA 98:7158-7163.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 7158-7163
    • Bulyk, M.L.1    Huang, X.2    Choo, Y.3    Church, G.M.4
  • 51
    • 0037447832 scopus 로고    scopus 로고
    • Evaluating the binding affinities of NF-κB p50 homodimer to the wild-type and single-nucleotide mutant Ig-κB sites by the unimolecular dsDNA microarray
    • Wang, J.K., T.X. Li, V.F. Bai, and Z.H. Lu. 2003. Evaluating the binding affinities of NF-κB p50 homodimer to the wild-type and single-nucleotide mutant Ig-κB sites by the unimolecular dsDNA microarray. Anal. Biochem. 316:192-201.
    • (2003) Anal. Biochem , vol.316 , pp. 192-201
    • Wang, J.K.1    Li, T.X.2    Bai, V.F.3    Lu, Z.H.4
  • 52
    • 27244437971 scopus 로고    scopus 로고
    • Proof of concept for microarray-based detection of DNA-binding oncogenes in cell extracts
    • Egener, T., E. Roulet, M. Zehnder, P. Bucher, and N. Mermod. 2005. Proof of concept for microarray-based detection of DNA-binding oncogenes in cell extracts. Nucleic Acids Res. 33:e79.
    • (2005) Nucleic Acids Res , vol.33
    • Egener, T.1    Roulet, E.2    Zehnder, M.3    Bucher, P.4    Mermod, N.5
  • 54
    • 0035137882 scopus 로고    scopus 로고
    • Control of oncogenesis and cancer therapy resistance by the transcription factor NF-κB
    • Baldwin, A.S. 2001. Control of oncogenesis and cancer therapy resistance by the transcription factor NF-κB. J. Clin. Invest. 107:241-246.
    • (2001) J. Clin. Invest , vol.107 , pp. 241-246
    • Baldwin, A.S.1
  • 55
    • 0029972806 scopus 로고    scopus 로고
    • Genes Dev
    • p53: puzzle and paradigm
    • Ko, L.J. and C. Prives. 1996. p53: puzzle and paradigm. Genes Dev. 10:1054-1072.
    • (1996) , vol.10 , pp. 1054-1072
    • Ko, L.J.1    Prives, C.2
  • 56
    • 0034803876 scopus 로고    scopus 로고
    • Transcription factor NF-kappaB as a potential biomarker for oxidative stress
    • van den Berg, R., G.R. Haenen, H. van den Berg, and A. Bast. 2001. Transcription factor NF-kappaB as a potential biomarker for oxidative stress. Br. J. Nutr. 86:S121-S127.
    • (2001) Br. J. Nutr , vol.86
    • van den Berg, R.1    Haenen, G.R.2    van den Berg, H.3    Bast, A.4
  • 57
    • 0031595760 scopus 로고    scopus 로고
    • 1α, 25-Dihydroxyvitamin D3 decreases DNA binding of nuclear factor-κB in human fibroblasts
    • Harant, H., B. Wol, and I.J.D. Lindley. 1998. 1α, 25-Dihydroxyvitamin D3 decreases DNA binding of nuclear factor-κB in human fibroblasts. FEBS Lett. 436:329-334.
    • (1998) FEBS Lett , vol.436 , pp. 329-334
    • Harant, H.1    Wol, B.2    Lindley, I.J.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.