Evaluating the binding affinities of NF-κB p50 homodimer to the wild-type and single-nucleotide mutant Ig-κB sites by the unimolecular dsDNA microarray

Analytical Biochemistry

Volumn 316, Issue 2, 2003, Pages 192-201

  Wang, Jin K ^a   Li, Tong X ^a   Bai, Yun F ^a   Lu, Zu H ^a  

^a SOUTHEAST UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; NUCLEOTIDES; PROTEINS;

BINDING AFFINITIES; BINDING INTERACTION; DNA-BINDING PROTEIN; HIGH AFFINITY; NUCLEOTIDE EXCHANGE; RELIABLE METHODS; SINGLE NUCLEOTIDES; UNIMOLECULAR;

BINDING SITES;

DNA; DNA BINDING PROTEIN; IMMUNOGLOBULIN ENHANCER BINDING PROTEIN; IMMUNOGLOBULIN KAPPA CHAIN; NUCLEOTIDE; PROTEIN P50;

ANALYTICAL PARAMETERS; ARTICLE; BINDING AFFINITY; DNA BINDING; DNA MICROARRAY; GENE TARGETING; MOLECULAR BIOLOGY; MUTANT; MUTATION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN PROTEIN INTERACTION; REGULATORY MECHANISM; RELIABILITY; WILD TYPE;

EID: 0037447832     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(03)00049-6     Document Type: Article

References (40)

1. Sen R., Baltimore D. Cell. 47:1986;921-928.
2. Baeuerle P.A., Baltimore D. Cell. 87:1996;13-20.
3. Lanardo M.J., Baltimor D. Cell. 58:1989;227-229.
4. Baldwin A.S. Jr. Annu. Rev. Immunol. 14:1996;649-681.
5. Baldwin A.S. Jr. J. Clin. Invest. 107:2001;36.
6. Epinat J.C., Dvorin E.L., Gilmore T.D. Oncogene. 18:2000;6896-6909.
7. Perkins N.D. Trends Biochem. Sci. 25:2000;434-440.
8. Urban M.B., Schreck R., Baeuerle P.A. EMBO J. 10:1991;1817-1825.
9. Müller C.W., Rey F.A., Sodeoka M., Verdine G.L., Harrison S.C. Nature. 373:1995;311-317.
10. Ghosh G., vanDuyne G., Ghosh S., Sigler P.B. Nature. 373:1995;303-310.
11. Müller C.W., Rey F.A., Harrison S.C. Nat. Struct. Biol. 3:1996;224-227.
12. Cramer P., Larson C.J., Verdine G.L., Müller C.W. EMBO J. 391:1997;7078-7090.
13. Chen F.E., Huang D.B., Chen Y.Q., Ghosh G. Nature. 391:1998;410-413.
14. Chen Y.Q., Ghosh S., Ghosh G. Nat. Struct. Biol. 5:1998;67-73.
15. Cramer P., Varrot A., Barillas-Mury C., Kafatos F.C., Müller C.W. Structure. 7:1999;841-852.
16. Huang D.B., Chen Y.Q., Ruetsche M., Phelps C.B., Ghosh G. Structure. 9:2001;669-678.
17. Berkowitz B., Huang D.B., Chen F.E., Singler P.B., Ghosh G. J. Biol. Chem. 277:2002;24694-24700.
18. Chen F.E., Huang D.B., Noro B., Thanos D., Ghosh G. J. Biol. Chem. 277:2002;24701-24708.
19. Escalante C.R., Shen L., Thanos D., Aggarwal1 A.K. Structure. 10:2002;383-391.
20. Zabel U., Schreck R., Baeuerle P.A. J. Biol. Chem. 266:1991;252-260.
21. Kunsch C., Ruben S.M., Rosen C.A. Mol. Cell. Biol. 12:1992;4412-4421.
22. Schmid R.M., Liptay S., Betts J.C., Nabel G.J. J. Biol. Chem. 269:1994;32162-32167.
23. Udalova I.A., Knight J.C., Vidal V., Nedospasov S.A., Kwiatkowski D. J. Biol. Chem. 273:1998;21178-21186.
24. Kittaka A., Kuze T., Asakura T., Ito K., Miyasaka T., Inoue J. Biorg. Med. Chem. Lett. 8:1998;3207-3210.
25. Chen F.E., Kempiak S., Huang D.B., Phelps C., Ghosh G. Protein Eng. 12:1999;423-428.
26. Machado J. Jr., Fernandez P.C., Baumann I., Dobbelaere D.A.E. Microbes Infection. 2:2000;1311-1320.
27. Udalova I.A., Richardson A., Denys A., Smith C., Ackerman H., Foxwell B., Kwiatkowski D. Mol. Cell. Biol. 20:2000;9113-9119.
28. Phelps C.B., Sengchanthalangsy L.L., Malek S., Ghosh G. J. Biol. Chem. 275:2000;24392-24399.
29. Menetski J.P. J. Biol. Chem. 275:2000;7619-7625.
30. Bulyk M.L., Gentalen E., Lockhart D.J., Church G.M. Nat. Biotechnol. 17:1999;573-577.
31. Bulyk M.L., Huang X., Choo Y., Church G.M. Proc. Natl. Acad. Sci. USA. 98:2001;7158-7163.
32. Bulyk M.L., Johnson P.L.F., Church G.M. Nucleic Acids Res. 30:2002;1255-1261.
33. Jiang J., Levine M. Cell. 72:1993;741-752.
34. Ip Y.T., Kraut R., Levine M., Rushlow C.A. Cell. 64:1991;439-446.
35. Huang J.D., Schwyter D.H., Shirokawa J.M., Courey A.J. Genes Dev. 7:1993;694-704.
36. Saito T., Takahashi Y., Hashimoto H., Kamataki T. J. Biol. Chem. 276:2001;38010-38022.
37. Chen C.D., Sawyers C.L. Mol. Cell. Biol. 22:2002;2862-2870.
38. Udalova I.A., Mott R., Field D., Kwiatkowski D. Proc. Natl. Acad. Sci. USA. 99:2002;8167-8172.
39. Hoyos B., Ballard D.W., Bohnlein E., Siekevitz M., Greene W.C. Science. 244:1989;457-459.
40. Collart M.A., Baeuerle P., Vassalli P. Mol. Cell. Biol. 10:1990;1498-1506.