메뉴 건너뛰기




Volumn 6, Issue , 2006, Pages

The use of genetic programming in the analysis of quantitative gene expression profiles for identification of nodal status in bladder cancer

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE 8; INTERCELLULAR ADHESION MOLECULE 1; LIPOCORTIN 5; MITOGEN ACTIVATED PROTEIN KINASE KINASE 6; MOLECULAR MARKER; VASCULOTROPIN RECEPTOR 2;

EID: 33747585109     PISSN: 14712407     EISSN: 14712407     Source Type: Journal    
DOI: 10.1186/1471-2407-6-159     Document Type: Article
Times cited : (67)

References (69)
  • 3
    • 84872262259 scopus 로고    scopus 로고
    • Treatment Statement for Health Professionals - Bladder Cancer
    • National Cancer Institute medNews
    • National Cancer Institute medNews: Treatment Statement for Health Professionals - Bladder Cancer. 2004 [http://www.meb.uni-bonn.de/cancer.gov/CDR0000062908.hmtl].
    • (2004)
  • 4
    • 10944246202 scopus 로고    scopus 로고
    • Urinary bladder. In 6th edition. Edited by: Greene FL, Page DL, Fleming ID, Fritz A, Balch CM, Haller DG, Morrow M. New York: Springer-Veriag
    • Urinary bladder. In AJCC Cancer Staging Manual 6th edition. Edited by: Greene FL, Page DL, Fleming ID, Fritz A, Balch CM, Haller DG, Morrow M. New York: Springer-Veriag; 2002:367-374.
    • (2002) AJCC Cancer Staging Manual , pp. 367-374
  • 6
    • 0034053164 scopus 로고    scopus 로고
    • Lympadenectomy in patients with transitional cell carcinoma of the urinary bladder; significance for staging and prognosis
    • Leissner J, Hohenfellner R, Thuroff JW, Wolf HK: Lympadenectomy in patients with transitional cell carcinoma of the urinary bladder; significance for staging and prognosis. BJU Int 2000, 85:817-823.
    • (2000) BJU Int , vol.85 , pp. 817-823
    • Leissner, J.1    Hohenfellner, R.2    Thuroff, J.W.3    Wolf, H.K.4
  • 8
    • 27444435075 scopus 로고    scopus 로고
    • Extent of lymphadenectomy in radical cystectomy for bladder cancer
    • Ather MH, Fatima S, Sinanoglu O: Extent of lymphadenectomy in radical cystectomy for bladder cancer. World J Surg Oncol 2005, 3:43.
    • (2005) World J Surg Oncol , vol.3 , pp. 43
    • Ather, M.H.1    Fatima, S.2    Sinanoglu, O.3
  • 9
    • 0035451797 scopus 로고    scopus 로고
    • Validation of biomarkers as early predictors of disease
    • Bonassi S, Neri M, Puntoni R: Validation of biomarkers as early predictors of disease. Mutat Res 2001, 480:349-58.
    • (2001) Mutat Res , vol.480 , pp. 349-358
    • Bonassi, S.1    Neri, M.2    Puntoni, R.3
  • 14
    • 2942538291 scopus 로고    scopus 로고
    • Sensitivity and reproducibility of standardized-competitive RT-PCR for transcript quantification and its comparison with real time RT-PCR
    • Pagliarulo V, George B, Beil SJ, Groshen S, Laird PW, Cai J, Willey J, Cote RJ, Datar RH: Sensitivity and reproducibility of standardized-competitive RT-PCR for transcript quantification and its comparison with real time RT-PCR. Mol Cancer 2004, 3:5.
    • (2004) Mol Cancer , vol.3 , pp. 5
    • Pagliarulo, V.1    George, B.2    Beil, S.J.3    Groshen, S.4    Laird, P.W.5    Cai, J.6    Willey, J.7    Cote, R.J.8    Datar, R.H.9
  • 15
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor Dimensionality Reduction Reveals High-Order Interactions among Estrogen Metabolism Genes in Sporadic Breast Cancer
    • Ritchie MD, Hahn LW, Roodi N, Bailey LR, Dupont WD, Plummer WD, Parl FF, Moore JH: Multifactor Dimensionality Reduction Reveals High-Order Interactions among Estrogen Metabolism Genes in Sporadic Breast Cancer. Am J Hum Genet 2001, 69:138-147.
    • (2001) Am J Hum Genet , vol.69 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Plummer, W.D.6    Parl, F.F.7    Moore, J.H.8
  • 17
    • 18844389724 scopus 로고    scopus 로고
    • Detection of micrometastases in pelvic lymph nodes in patients undergoing radical cystectomy for focally invasive bladder cancer by real-time reverse transcriptase-PCR for cytokeratin 19 and uroplakin II
    • Kurahashi T, Hara I, Oka N, Kamidono S, Eto H, Miyake H: Detection of micrometastases in pelvic lymph nodes in patients undergoing radical cystectomy for focally invasive bladder cancer by real-time reverse transcriptase-PCR for cytokeratin 19 and uroplakin II. Clin Cancer Res 2005, 11:3773-3777.
    • (2005) Clin Cancer Res , vol.11 , pp. 3773-3777
    • Kurahashi, T.1    Hara, I.2    Oka, N.3    Kamidono, S.4    Eto, H.5    Miyake, H.6
  • 18
    • 20744439572 scopus 로고    scopus 로고
    • Early cystectomy far clinical stage TI bladder cancer
    • Hollenbeck BK, Montie JE: Early cystectomy far clinical stage TI bladder cancer. Nat Clin Pract Urol 2004, 1:4-5.
    • (2004) Nat Clin Pract Urol , vol.1 , pp. 4-5
    • Hollenbeck, B.K.1    Montie, J.E.2
  • 20
    • 0030963967 scopus 로고    scopus 로고
    • Smooth non-parametric receiver operating characteristic (ROC) curves for continuous diagnostic tests
    • Zou KH, Hall WJ, Shapiro DE: Smooth non-parametric receiver operating characteristic (ROC) curves for continuous diagnostic tests. Stat Med 1997, 16:2143-2156.
    • (1997) Stat Med , vol.16 , pp. 2143-2156
    • Zou, K.H.1    Hall, W.J.2    Shapiro, D.E.3
  • 21
    • 0020083498 scopus 로고
    • The meaning and use of the area under a receiver operating characteristic (ROC) curve
    • Hanley JA, McNeil BJ: The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 1982, 143:29-36.
    • (1982) Radiology , vol.143 , pp. 29-36
    • Hanley, J.A.1    McNeil, B.J.2
  • 23
    • 0018015137 scopus 로고
    • Modeling by shortest data description
    • Rissanen J: Modeling by shortest data description. Automatica 1978, 14:465-471.
    • (1978) Automatica , vol.14 , pp. 465-471
    • Rissanen, J.1
  • 24
    • 0001024505 scopus 로고
    • On the uniform convergence of relative frequencies of events to their probabilities
    • Vapnik VN, Chervonenkis AY: On the uniform convergence of relative frequencies of events to their probabilities. Theory Probab Apl 1971, 16:264-280.
    • (1971) Theory Probab Apl , vol.16 , pp. 264-280
    • Vapnik, V.N.1    Chervonenkis, A.Y.2
  • 25
    • 0000245470 scopus 로고
    • Selecting a classification method by cross-validation
    • Schaffer C: Selecting a classification method by cross-validation. Machine Learning 1993, 13:135-143.
    • (1993) Machine Learning , vol.13 , pp. 135-143
    • Schaffer, C.1
  • 27
  • 28
    • 30144441888 scopus 로고    scopus 로고
    • Theoretical bounds for majority voting performance for a binary classification problem
    • Narasimhamurthy A: Theoretical bounds for majority voting performance for a binary classification problem. IEEE Trans Pattern Anal Mach Intell 2005, 27:1988-1995.
    • (2005) IEEE Trans Pattern Anal Mach Intell , vol.27 , pp. 1988-1995
    • Narasimhamurthy, A.1
  • 29
    • 0034190238 scopus 로고    scopus 로고
    • Intercellular adhesion molecule-I (ICAM-1) expression and cell signaling cascades
    • Hubbard AK, Rothlein R: Intercellular adhesion molecule-I (ICAM-1) expression and cell signaling cascades. Free Radic Biol Med 2000, 28:1379-1386.
    • (2000) Free Radic Biol Med , vol.28 , pp. 1379-1386
    • Hubbard, A.K.1    Rothlein, R.2
  • 30
    • 0038489134 scopus 로고    scopus 로고
    • Fibrinogen mediates bladder cancer cell migration in an ICAM-1-dependent pathway
    • Roche Y, Pasquier D, Rambeaud JJ, Seigneurin D, Duperray A: Fibrinogen mediates bladder cancer cell migration in an ICAM-1-dependent pathway. Thromb Haemost 2003, 89:1089-1097.
    • (2003) Thromb Haemost , vol.89 , pp. 1089-1097
    • Roche, Y.1    Pasquier, D.2    Rambeaud, J.J.3    Seigneurin, D.4    Duperray, A.5
  • 31
    • 0037242069 scopus 로고    scopus 로고
    • Potential value of soluble intercellular adhesion molecule-I in the serum of patients with bladder cancer
    • Ozer G, Altinel M, Kocak B, Balci M, Altan A, Gonenc F: Potential value of soluble intercellular adhesion molecule-I in the serum of patients with bladder cancer. Urol Int 2003, 70:167-171.
    • (2003) Urol Int , vol.70 , pp. 167-171
    • Ozer, G.1    Altinel, M.2    Kocak, B.3    Balci, M.4    Altan, A.5    Gonenc, F.6
  • 32
    • 0036894405 scopus 로고    scopus 로고
    • Spontaneous hematogenous and lymphatic metastasis, but not primary tumor growth or angiogenesis, is diminished in fibrinogen-deficient mice
    • Palumbo JS, Potter JM, Kaplan LS, Talmage K, Jackson DG, Degen JL: Spontaneous hematogenous and lymphatic metastasis, but not primary tumor growth or angiogenesis, is diminished in fibrinogen-deficient mice. Cancer Res 2002, 62:6966-6972.
    • (2002) Cancer Res , vol.62 , pp. 6966-6972
    • Palumbo, J.S.1    Potter, J.M.2    Kaplan, L.S.3    Talmage, K.4    Jackson, D.G.5    Degen, J.L.6
  • 34
    • 2942530310 scopus 로고    scopus 로고
    • ERK and p38 MAPK-activated protein kinases: A family of protein kinases with diverse biological functions
    • Roux PP, Blenis J: ERK and p38 MAPK-activated protein kinases: a family of protein kinases with diverse biological functions. Microbial Mol Biol Rev 2004, 68:320-344.
    • (2004) Microbial Mol Biol Rev , vol.68 , pp. 320-344
    • Roux, P.P.1    Blenis, J.2
  • 35
    • 19644367000 scopus 로고    scopus 로고
    • Activation and signaling of the p38 MAP kinase pathway
    • Zarubin T, Han J: Activation and signaling of the p38 MAP kinase pathway. Cell Res 2005, 15:11-18.
    • (2005) Cell Res , vol.15 , pp. 11-18
    • Zarubin, T.1    Han, J.2
  • 36
    • 0035336436 scopus 로고    scopus 로고
    • The p38 mitogen-activated protein kinase mediates cytoskeletal remodeling in pulmonary microvascular endothelial cells upon intracellular adhesion molecule-I ligation
    • Wang Q, Doerschuk CM: The p38 mitogen-activated protein kinase mediates cytoskeletal remodeling in pulmonary microvascular endothelial cells upon intracellular adhesion molecule-I ligation. J Immunol 2001, 166:6877-6884.
    • (2001) J Immunol , vol.166 , pp. 6877-6884
    • Wang, Q.1    Doerschuk, C.M.2
  • 37
    • 12844283269 scopus 로고    scopus 로고
    • Tissue factor cytoplasmic domain stimulates migration by activation of the GTPase Rac1 and the mitogen-activated protein kinase p38
    • Ott I, Weigand B, Michl R, Seitz I, Sabbari-Erfani N, Neumann FJ, Schomig A: Tissue factor cytoplasmic domain stimulates migration by activation of the GTPase Rac1 and the mitogen-activated protein kinase p38. Circulation 2005, 111:349-355.
    • (2005) Circulation , vol.111 , pp. 349-355
    • Ott, I.1    Weigand, B.2    Michl, R.3    Seitz, I.4    Sabbari-Erfani, N.5    Neumann, F.J.6    Schomig, A.7
  • 39
    • 17644367566 scopus 로고    scopus 로고
    • H-Ras-specific activation of Rac-MKK3/6-p38 pathway: Its critical role in invasion and migration of breast epithelial cells
    • Shin I, Kim S, Song H, Kim HP, Moon A: H-Ras-specific activation of Rac-MKK3/6-p38 pathway: its critical role in invasion and migration of breast epithelial cells. J Biol Chem 2005, 280:14675-14683.
    • (2005) J Biol Chem , vol.280 , pp. 14675-14683
    • Shin, I.1    Kim, S.2    Song, H.3    Kim, H.P.4    Moon, A.5
  • 40
    • 0141482096 scopus 로고    scopus 로고
    • P38 kinase is a key signaling molecule for H-Ras-induced cell motility and invasive phenotype in human breast epithelial cells
    • Kim MS, Lee EJ, Kim HR, Moon A: p38 kinase is a key signaling molecule for H-Ras-induced cell motility and invasive phenotype in human breast epithelial cells. Cancer Res 2003, 63:5454-5461.
    • (2003) Cancer Res , vol.63 , pp. 5454-5461
    • Kim, M.S.1    Lee, E.J.2    Kim, H.R.3    Moon, A.4
  • 42
    • 0141996422 scopus 로고    scopus 로고
    • Vascular endothelial growth factor receptor-2: Its unique signaling and specific ligand, VEGF-E
    • Shibuya M: Vascular endothelial growth factor receptor-2: its unique signaling and specific ligand, VEGF-E. Cancer Sci 2003, 94:751-756.
    • (2003) Cancer Sci , vol.94 , pp. 751-756
    • Shibuya, M.1
  • 45
    • 0029083795 scopus 로고
    • Identification of human cyclin-dependent kinase 8, a putative protein kinase partner for cyclin C
    • Tassan JP, Jaquenoud M, Leopold P, Schultz SJ, Nigg EA: Identification of human cyclin-dependent kinase 8, a putative protein kinase partner for cyclin C. Proc Natl Acad Sci USA 1995, 92:8871-8875.
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 8871-8875
    • Tassan, J.P.1    Jaquenoud, M.2    Leopold, P.3    Schultz, S.J.4    Nigg, E.A.5
  • 48
    • 0033636517 scopus 로고    scopus 로고
    • The USA-derived transcriptional coactivator PC2 is a submodule of TRAP /SMCC and acts synergistically with other PCs
    • Malik S, Gu W, Wu W, Qin J, Roeder RG: The USA-derived transcriptional coactivator PC2 is a submodule of TRAP/SMCC and acts synergistically with other PCs. Mol Cell 2000, 5:753-760.
    • (2000) Mol Cell , vol.5 , pp. 753-760
    • Malik, S.1    Gu, W.2    Wu, W.3    Qin, J.4    Roeder, R.G.5
  • 49
    • 0034956192 scopus 로고    scopus 로고
    • Characterization of mediator complexes from HeLa cell nuclear extract
    • Wang G. Cantin GT, Stevens JL, Berk AJ: Characterization of mediator complexes from HeLa cell nuclear extract. Mol Cell Biol 2001, 21:4604-4613.
    • (2001) Mol Cell Biol , vol.21 , pp. 4604-4613
    • Wang, G.1    Cantin, G.T.2    Stevens, J.L.3    Berk, A.J.4
  • 50
    • 0032135274 scopus 로고    scopus 로고
    • NAT, a human complex containing Srb polypeptides that functions as a negative regulator of activated transcription
    • Sun X, Zhang Y, Cho H, Rickert P, Lees E, Lane W, Reinberg D: NAT, a human complex containing Srb polypeptides that functions as a negative regulator of activated transcription. Mol Cell 1998, 2:213-222.
    • (1998) Mol Cell , vol.2 , pp. 213-222
    • Sun, X.1    Zhang, Y.2    Cho, H.3    Rickert, P.4    Lees, E.5    Lane, W.6    Reinberg, D.7
  • 51
    • 0034618762 scopus 로고    scopus 로고
    • TFIIH is negatively regulated by cdkB-containing mediator complexes
    • Akoulitchev S, Chuikov S, Reinberg D: TFIIH is negatively regulated by cdkB-containing mediator complexes. Nature 2000, 407:102-106.
    • (2000) Nature , vol.407 , pp. 102-106
    • Akoulitchev, S.1    Chuikov, S.2    Reinberg, D.3
  • 55
    • 0033856521 scopus 로고    scopus 로고
    • Annexin V relocates to the platelet cytoskeleton upon activation and binds to a specific isoform of actin
    • Tzima E, Trotter PJ, Orchard MA, Walker JH: Annexin V relocates to the platelet cytoskeleton upon activation and binds to a specific isoform of actin. Eur J Biochem 2000, 267:4720-4730.
    • (2000) Eur J Biochem , vol.267 , pp. 4720-4730
    • Tzima, E.1    Trotter, P.J.2    Orchard, M.A.3    Walker, J.H.4
  • 56
    • 0036717347 scopus 로고    scopus 로고
    • Increased uptake of the apoptosis-imaging agent (99 m)Tc recombinant human Annexin V in human tumors after one course of chemotherapy as a predictor of tumor response and patient prognosis
    • Belhocine T, Steinmetz N, Hustinx P, Bartsch P, Jerusalem G, Seidel L, Rigo P, Green A: Increased uptake of the apoptosis-imaging agent (99 m)Tc recombinant human Annexin V in human tumors after one course of chemotherapy as a predictor of tumor response and patient prognosis. Clin Cancer Res 2002, 8:2766-2774.
    • (2002) Clin Cancer Res , vol.8 , pp. 2766-2774
    • Belhocine, T.1    Steinmetz, N.2    Hustinx, P.3    Bartsch, P.4    Jerusalem, G.5    Seidel, L.6    Rigo, P.7    Green, A.8
  • 58
    • 0141988569 scopus 로고    scopus 로고
    • The role of apoptosis in tumor progression and metastasis
    • Townson JL, Naumov GN, Chambers AF: The role of apoptosis in tumor progression and metastasis. Curr Mol Med 2003, 3:631-642.
    • (2003) Curr Mol Med , vol.3 , pp. 631-642
    • Townson, J.L.1    Naumov, G.N.2    Chambers, A.F.3
  • 60
    • 4344643288 scopus 로고    scopus 로고
    • What Makes a Problem GP-Hard? A Look at How Structure Affects Content
    • In Edited by: Riolo RL, Worzel B. Boston: Kluwer Academic
    • Daida JM: What Makes a Problem GP-Hard? A Look at How Structure Affects Content. In Genetic Programming Theory and Practice Edited by: Riolo RL, Worzel B. Boston: Kluwer Academic; 2003:99-118.
    • (2003) Genetic Programming Theory and Practice , pp. 99-118
    • Daida, J.M.1
  • 61
    • 33644839268 scopus 로고    scopus 로고
    • Automatic discovery of cross-family sequence features associated with protein function
    • Brameier M, Haan J, Krings A, MacCallum RM: Automatic discovery of cross-family sequence features associated with protein function. BMC Bioinformatics 2006, 7:16.
    • (2006) BMC Bioinformatics , vol.7 , pp. 16
    • Brameier, M.1    Haan, J.2    Krings, A.3    MacCallum, R.M.4
  • 62
    • 32044450752 scopus 로고    scopus 로고
    • Classification of gene expression data with genetic programming
    • In Edited by: Riolo RL, Worzel B. Boston: Kluwer Academic
    • Driscoll JA, Worzel B, MacLean D: Classification of gene expression data with genetic programming. In Genetic Programming Theory and Practice Edited by: Riolo RL, Worzel B. Boston: Kluwer Academic; 2003:25-42.
    • Genetic Programming Theory and Practice , vol.2003 , pp. 25-42
    • Driscoll, J.A.1    Worzel, B.2    MacLean, D.3
  • 63
    • 26944476983 scopus 로고    scopus 로고
    • Cancer prediction using diversity-based ensemble genetic programming
    • Hong JH, Cho SB: Cancer prediction using diversity-based ensemble genetic programming. Lecture Notes in Computer Science 2005, 3558:294-304.
    • (2005) Lecture Notes in Computer Science , vol.3558 , pp. 294-304
    • Hong, J.H.1    Cho, S.B.2
  • 66
    • 2442439081 scopus 로고    scopus 로고
    • Genetic Programming for Data Classification: Partitioning the Search Space
    • In 14-17 March 2004; Nicosia Edited by: Haddad HM, Omicini A, Wainwright RL, Liebrock LM. New York: ACM Press
    • Eggermont J, Kok JN, Kosters WA: Genetic Programming for Data Classification:Partitioning the Search Space. In Proceedings of the 2004 ACM symposium on Applied computing: 14-17 March 2004; Nicosia Edited by: Haddad HM, Omicini A, Wainwright RL, Liebrock LM. New York: ACM Press; 2004:1001-1005.
    • (2004) Proceedings of the 2004 ACM Symposium on Applied Computing , pp. 1001-1005
    • Eggermont, J.1    Kok, J.N.2    Kosters, W.A.3
  • 69
    • 21744435151 scopus 로고    scopus 로고
    • Molecular staging of bladder cancer
    • Mitra AP, Datar RH, Cote RJ: Molecular staging of bladder cancer. BJU Int 2005, 96:7-12.
    • (2005) BJU Int , vol.96 , pp. 7-12
    • Mitra, A.P.1    Datar, R.H.2    Cote, R.J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.