QTL detection of production traits for the Kuruma prawn Penaeus japonicus (Bate) using AFLP markers

Aquaculture

Volumn 258, Issue 1-4, 2006, Pages 198-210

  Li, Yutao ^a   Dierens, Leanne ^a   Byrne, Keren ^a   Miggiano, Emanuela ^a   Lehnert, Sigrid ^a   Preston, Nigel ^a   Lyons, Russell ^a  

^a CSIRO   (Australia)

Author keywords

AFLP markers; Growth QTL; Penaeus japonicus

Indexed keywords

GENOMICS; POLYMORPHISM; PRAWN CULTURE;

MARSUPENAEUS JAPONICUS; PENAEIDAE;

EID: 33746992142     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aquaculture.2006.04.027     Document Type: Article

References (40)

1. Agresti J.J., Seki S., Cnaani A., Poompuang S., Hallerman E.M., Umiel N., Hulata G., Gall G.A.E., and May B. Breeding new strains of tilapia: development of an artificial center of origin and linkage map based on AFLP and microsatellite loci. Aquaculture 185 (2000) 43-56
2. th World Congress on Genetics Applied to Livestock Production vol. 22 (1994) 65-66
3. Basten C., Weir B., and Zeng Z.B. QTL Cartographer, Version 1.16. (2002), Department of Statistics, North Carolina University, Raleigh, NC
4. Carey G., and Williamson J. Linkage analysis of quantitative traits: increased power by using selected samples. Am. J. Hum. Genet. 49 (1991) 786-796
5. Chow S., Dougherty W.J., and Sandifer P.A. Meiotic chromosome complements and nuclear DNA contents of four species of shrimps of the genus Penaeus. J. Crustac. Biol. 10 (1990) 29-36
6. Churchill G.A., and Doerge R.W. Empirical threshold values for quantitative trait mapping. Genetics 138 (1994) 963-971
7. 2 tilapia hybrid. Aquaculture 223 (2003) 117-128
8. Darvasi A., and Soller M. Selective genotyping for determination of linkage between a marker locus and quantitative trait locus. Theor. Appl. Genet. 85 (1992) 352-359
9. Doerge R.W., and Churchill G.A. Permutation tests for multiple loci affecting a quantitative character. Genetics 142 (1996) 285-294
10. Felip A., Young W.P., Wheelera P.A., and Thorgaard G. An AFLP-based approach for the identification of sex-linked markers in rainbow trout (Oncorhynchus mykiss). Aquaculture 247 (2005) 35-43
11. Haley C.S., and Knott S.A. A simple method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69 (1992) 315-324
12. Lander E.S., and Botstein D. Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121 (1989) 185-199
13. Launey S., and Hedgecock D. High genetic load in the Pacific oysters Crassostrea gigas. Genetics 159 (2001) 255-265
14. Lebowitz R.J., Soller M., and Beckmann J.S. Trait-based analyses for the detection of linkage between marker loci and quantitative trait loci in crosses between inbred lines. Theor. Appl. Genet. 73 (1987) 556-562
15. Lehnert S.A., Wilson K.J., Byrne K., and Moore S.S. Tissue-specific expressed sequence tags from the black tiger shrimp Penaeus monodon. Mar. Biotechnol. 1 (1999) 465-476
16. Li L., and Guo X. AFLP-based genetic linkage maps of the Pacific oyster Crassostrea gigas Thunberg. Mar. Biotechnol. 6 (2004) 26-36
17. Li Y., Byrne K., Miggiano E., Whan V., Moore S., Keys S., Crocos P., Preston N., and Lehnert S. Genetic mapping of the Kuruma prawn Penaeus japonicus using AFLP markers. Aquaculture 219 (2003) 143-156
18. Liu Z.J., and Cordes J.F. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238 (2004) 1-37
19. Liu Z.J., Li P., Argue B.J., and Dunham R.A. Random amplified polymorphic DNA markers: usefulness for gene mapping and analysis of genetic variation of catfish. Aquaculture 174 (1999) 59-68
20. Liu Z.J., Karsi A., Li P., Cao D., and Dunham R. An AFLP-based genetic linkage map of channel catfish (Ictalurus punctatus) constructed by using an interspecific hybrid resource family. Genetics 165 (2003) 687-694
21. Lundin M., Mikkelsen B., Moran P., Martinez J.L., and Syed M. Cosmid clones from Atlantic salmon: physical genome mapping. Aquaculture 173 (1999) 59-64
22. Michelmore R.W., Paran I., and Kesseli R.V. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. U. S. A. 88 (1991) 9828-9832
23. Moore S.S., Whan V., Davis G.P., Byrne K., Hetzel D.J.S., and Preston N. The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Aquaculture 173 (1999) 19-32
24. Ozaki A., Sakamoto T., Nakamura K., Coimbra M.R.M., Akutsu T., and Okamoto N. Quantitative trait loci (QTLs) associated with resistance/susceptibility to infectious pancreatic necrosis virus (IPNV) in rainbow trout (Oncorhynchus mykiss). Mol. Genet. Geno. 265 (2001) 23-31
25. Palti Y., Parsons J.E., and Thorgaard G.H. Identification of candidate DNA markers associated with IHN virus resistance in backcrosses of rainbow Oncorhynchus mykiss and cutthroat trout O. clarki. Aquaculture 173 (1999) 81-94
26. Perez F., Erazo C., Zhinaula M., Volckaert F., and Calderon J. A sex-specific linkage map of the white shrimp Penaeus (Litopenaeus) vannamei based on AFLP markers. Aquaculture 242 (2004) 105-118
27. Perry G.M.L., Danzmann R.G., Ferguson M.M., and Gibson J.P. Quantitative trait loci for upper thermal tolerance in outbred strains of rainbow trout (Oncorhynchus mykiss). Heredity 86 (2001) 333-341
28. Robison B.D., Wheeler P.A., Sundin K., Sikka P., and Thorgaard G.H. Composite interval mapping reveals a major locus influencing embryonic development rate in rainbow trout (Oncorhynchus mykiss). J. Heredity 92 (2001) 16-22
29. Ronin Y.I., Korol A.B., and Weller J.I. Selective genotyping to detect quantitative trait loci affecting multiple traits: interval mapping analysis. Theor. Appl. Genet. 97 (1998) 1169-1178
30. Sakamoto T., Danzmann R.G., Okamoto N., Ferguson M.M., and Ihssen P.E. Linkage analysis of quantitative trait loci associated with spawning time in rainbow trout Oncorhynchus mykiss. Aquaculture 173 (1999) 33-43
31. Sakamoto T., Danzmann R.G., Gharbi K., Howard P., Ozaki A., Khoo S.K., Woram R., Okamoto N., Ferguson M.M., Holm L.-E., Guyomard R., and Hoyheim B. A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. Genetics 155 (2000) 1331-1345
32. Slettan A., Olsaker I., and Lie O. Segregation studies and linkage analysis of Atlantic salmon microsatellites using haploid genetics. Heredity 78 (1997) 620-627
33. Thorgaard, G., 2002. Application of molecular genetics to fish breeding. Proceedings of the 7th World Congress on Genetics Applied to Livestock Production. CD-ROM, Communication No 06-06.
34. Van Gestel S., Houwing-Duistermaat J., Adolfsson R., Van Duijn C., and Van Broeckhoven C. Power of selective genotyping in genetic association analyses of quantitative traits. Behav. Genet. 30 (2000) 141-146
35. Waldbieser G.C., Bosworth B.G., Nonneman D.J., and Wolters W.R. A microsatellite-based genetic linkage map for channel catfish, Ictalurus punctatus. Genetics 158 (2001) 727-734
36. Wilson K.J., Li Y., Whan V.A., Lehnert S.A., Byrne K., Moore S.S., Pongsomboon S., Tassanakajon A., Rosenberg G., Ballment E., Fayazi Z., Swan J., Kenway M., and Benzie J. Genetic mapping of the black tiger shrimp Penaeus monodon with Amplified Fragment Length Polymorphisms. Aquaculture 204 (2002) 297-309
37. Young W.P., Wheeler P.A., Coryell V.H., Keim P., and Thorgaard G.H. A detailed linkage map of rainbow trout produced using doubled haploids. Genetics 148 (1998) 839-850
38. Yu Z., and Guo X. Genetic linkage map of the eastern oyster Crassostrea virginica Gmelin. Biol. Bull. 204 (2003) 327-338
39. Zeng Z.B. Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Proc. Natl. Acad. Sci. U. S. A. 90 (1993) 10972-10976
40. Zeng Z.B. Precision mapping of quantitative trait loci. Genetics 136 (1994) 1457-1468