Tissue-specific expressed sequence tags from the black tiger shrimp Penaeus monodon

Marine Biotechnology

Volumn 1, Issue 5, 1999, Pages 465-476

  Lehnert, Sigrid A ^a   Wilson, Kate J ^b   Byrne, Keren ^a   Moore, Stephen S ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b AUSTRALIAN INSTITUTE OF MARINE SCIENCE   (Australia)

Author keywords

CDNA libraries; ESTs; Gene expression; Genome; Penaeus monodon; Shrimp

Indexed keywords

CDNA LIBRARY; COMPUTER ANALYSIS; EXPRESSED SEQUENCE TAG; GENE SEQUENCING; MICROSATELLITE DNA; REPETITIVE DNA;

BIOTECHNOLOGY; DATABASE; GENETICS;

PENAEUS MONODON;

EID: 0033195097     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00011803     Document Type: Article

References (28)

1. Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., Merril, C.R., Wu, A., and Venter, J.C. (1991). Complementary DNA sequencing: expressed sequence tags and the human genome project. Science 252:1651-1656.
2. Adams, M.D., Kerlavage A.R., Fleischmann R.D., Fuldner R.A., et al. (1995). Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Nature 377(Suppl):3-174.
3. Altschul, S.F., Gish, W., Miller, W., Myers, E.G., and Lipman, D.J. (1990). Basic local alignment search tool. J Mol Biol 215:403-410.
4. Anderson, I., and Brass, A. (1998). Searching DNA databases for similarities to DNA sequences: when is a match significant? Bioinformatics 14:349-356.
5. Benzie, J.A.H. (1998). Penaeid genetics and biotechnology. Aquaculture 164:23-47.
6. Bloomquist, B.T., Shortridge, R.D., Schneuwly, S., Perdew, M., Montell, C., Steller, H., Rubin, G., and Pak, W.L. (1988). Isolation of a putative phospholipase C gene of Drosophila, norpA, and its role in phototransduction. Cell 54:723-733.
7. Brady, K.P., Rowe, L.B., Her, H., Stevens, T.J., Eppig, J. Sussman, D.J., Sikela, J., and Beier, D.R. (1997). Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res 7:1085-1093.
8. Braun, J.E., and Scheller, R.H. (1995). Cysteine string protein, a DnaJ family member, is present on diverse secretory vesicles. Neuropharmacology 34:1361-1369.
9. Brouwer, M., Winge, D.R., and Gray, W.R. (1989). Structural and functional diversity of copper-metallothionins from the American lobster Homarus vulgaris. J Inorg Biochem 35:289-303.
10. Browdy, C. (1998). Recent developments in penaeid broodstock and seed production technologies: improving the outlook for superior captive stocks. Aquaculture 164:3-21.
11. Chomczynski, P., and Sacchi, N. (1987). Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal Biochem 162:156-159.
12. Depeiges, A., Goubely, C., Lenoir, A., Cocherel, S., Picard, G., Raynal, M., Grellet, F., and Delseny, M. (1995). Identification of the most represented repeated motifs in Arabidopsis thaliana microsatellite loci. Theor Appl Genet 91:160-168.
13. Fields, C. (1994). Analysis of gene expression by tissue and developmental stage. Curr Opin Biotechnol 5:595-598.
14. Fingerman, M. (1992). Glands and secretion. In: Harrison, F.W., and Humes, A.G. (eds.). Microscopic Anatomy of Invertebrates: Volume 10, Decapod Crustacea, New York: Wiley-Liss, 345-394.
15. Gish, W., and States, D.J. (1993). Identification of protein coding regions by database similarity search. Nature Genet 3:266-272.
16. Khan, A.S., Wilcox, A.S., Polymeropoulos, M.H. Hopkins, J.A., Stevens, T.J., Robinson, M., Orpana, A.K., and Sikela, J.M. (1992). Single pass sequencing and physical and genetic mapping of human brain cDNAs. Nature Genet 2:180-185.
17. Marra, M.A., Hillier, L., and Waterston, R.H. (1998). Expressed sequence tags - ESTablishing bridges between genomes. Trends Genet 14:4-7.
18. Matsumoto, H., and Yamada, T. (1991). Phosrestins I and II: arrestin homologs which undergo differential light-induced phosphorylation in the Drosophila photoreceptor in vivo. Biochem Biophys Res Commun 177:1306-1312.
19. Moore, S.S., Whan, V., Davis, G.P., Byrne, K., Hetzel, D.J.S., and Preston, N.P. (1999). The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Aquaculture 173:19-32.
20. Morris, S.A., Schroder, S., Plessman, U., Weber, K., and Ungewickell, E. (1993). Clathrin assembly protein AP180: primary structure, domain organization and identification of a clathrin binding site. EMBO J 12:667-675.
21. Neckameyer, W.S., and White, K. (1992). A single locus encodes both phenylalanine hydroxlase and tryptophan hydroxylase activities in Drosophila. J Biol Chem 267:4199-4206.
22. Palumbi, S.R., and Baker, C.S. (1994). Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol Biol Evol 11:426-435.
23. Rainer, J., and Brouwer, M. (1993). Hemocyanin synthesis in the blue-crab Callinectes sapidus. Comp Biochem Physiol B 104:69-73.
24. Raming, K., Freitag, J., Krieger, J., and Breer, H. (1993). Arrestin-subtypes in insect antennae. Cell Signal 5:69-80.
25. Rosenberry B. (1997). World Shrimp Farming 1997. San Diego, Calif.: Shrimp News International.
26. Ruyter-Spira, C.P., Crooijmans, R.A., Dijkhof, R.M., Van Oers, P.M., Strijk, J.A., Van der Poel, J., and Groenen, M.M. (1996). Development and mapping of polymorphic microsatellite markers derived from a chicken brain cDNA library. Anim Genet 27:229-234.
27. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd ed. New York: Cold Spring Harbor Laboratory Press.
28. Tassanakajon, A., Tiptawonnukul, A., Supungul, P., Rimphanitchayakit, V., Cook, D., Jarayabhand, P., Klinbunga, S., and Boonsaeng, V. (1998). Isolation and characterization of microsatellite markers in the black tiger prawn Penaeus monodon. Mol Mar Biol Biotechnol 7:55-61.