Random amplified polymorphic DNA markers: Usefulness for gene mapping and analysis of genetic variation of catfish

Aquaculture

Volumn 174, Issue 1-2, 1999, Pages 59-68

  Liu, Z J ^a   Li, P ^a   Argue, B J ^a   Dunham, R A ^a  

^a AUBURN UNIVERSITY   (United States)

Author keywords

Catfish; Gene mapping; Ictalurus; Marker; PCR; Polymorphism; Primer; RAPD

Indexed keywords

GENE MAPPING; GENETIC LINKAGE; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC VARIANCE; IDENTIFICATION; RANDOM AMPLIFIED POLYMORPHIC DNA; UNITED STATES;

ICTALURUS FURCATUS; ICTALURUS PUNCTATUS;

EID: 0033560735     PISSN: 00448486     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0044-8486(99)00007-1     Document Type: Article

References (30)

1. 3 and Backcross Hybrids. PhD Dissertation, Auburn University, Auburn, AL, p. 1-112.
2. Bardakci F., Skibinski D.O. Application of the RAPD technique in tilapia fish: species and subspecies identification. Heredity. 73:1994;117-123.
3. Bielawski J.P., Pumo D.E. Randomly amplified polymorphic DNA (RAPD) analysis of Atlantic Coast striped bass. Heredity. 78:1997;32-40.
4. Borowsky R.L., McClelland M., Cheng R., Welsh J. Arbitrarily primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: the Xiphophorus model. Mol. Biol. Evol. 12:1995;1022-1032.
5. Caccone A., Allegrucci G., Fortunato C., Sbordoni V. Genetic differentiation within the European sea bass (D. labrax) as revealed by 14 RAPD-PCR assays. J. Hered. 88:1997;316-324.
6. Chen H., Leibenguth F. Studies on multilocus fingerprints, RAPD markers, and mitochondrial DNA of a gynogenetic fish (Carassius auratus gibelio). Biochem. Genet. 3:1995;297-306.
7. Corley-Smith G.E., Lim C.J., Brandhorst B.P. Production of androgenetic zebrafish (Danio rerio). Genetics. 142:1996;265-276.
8. Cunningham C.O., Mo T.A. Random amplified polymorphic DNA (RAPD) analysis of three Norwegian Gyrodactylus salaris populations (Monogenea: Gyrodactylidae). J. Parasitol. 83:1997;311-314.
9. Dinesh K.R., Lim T.M., Chua K.L., Chan W.K., Phang V.P. RAPD analysis: an efficient method of DNA fingerprinting in fishes. Zool. Sci. 10:1993;849-854.
10. Dunham R.A., Smitherman R.O., Brooks M.J., Benchakan M., Chappell J.A. Paternal predominance in reciprocal channel-blue hybrid catfish. Aquaculture. 29:1982;389-396.
11. Dunham R.A., Hyde C., Masser M., Smitherman R.O., Perez R., Plumb J., Ramboux A.C. Comparison of culture traits of channel catfish, Ictalurus punctatus, and blue catfish, I. furcatus. J. Appl. Aquaculture. 3:1993;257-267.
12. Foo C.L., Dinesh K.R., Lim T.M., Chan W.K., Phang V.P. Inheritance of RAPD markers in the guppy fish, Poecilia reticulata. Zool. Sci. 12:1995;535-541.
13. Hadrys H., Balick M., Schierwater B. Applications of random amplified polymorphic DNA (RAPD) in molecular ecology. Mol. Ecol. 1:1992;55-63.
14. Hedrik P. Shooting the RAPDs. Nature. 335:1992;679-680.
15. Johnson S.L., Midson C., Ballinger E.W., Postlethwait J.H. Identification of RAPD primers that reveal extensive polymorphisms between laboratory strains of zebrafish. Genomics. 19:1994;152-156.
16. Karsi A., Li P., Dunham R.A., Liu Z.J. Transcriptional activities in the pituitaries of channel catfish before and after induced ovulation by injection of carp pituitary extract as revealed by expressed sequence tag analysis. J. Mol. Endocrinol. 21:1998;121-129.
17. Kazianis S., Morizot D.C., McEntire B.B., Nairn R.S., Borowsky R.L. Genetic mapping in Xiphophorus hybrid fish: assignment of 43 AP-PCR/RAPD and isozyme markers to multipoint linkage groups. Genome Res. 6:1996;280-289.
18. 2 and backcross hybrids. Mol. Gen. Genet. 258:1998;260-268.
19. 2 and backcross hybrids. Anim. Genet. 29:1998;58-62.
20. Liu, Z.J., Karsi, A., Dunham, R.A., 1999a. Development of polymorphic EST markers suitable for genetic linkage mapping of catfish. Mar. Biotechnol. (in press).
21. Liu Z., Tan G., Kucuktas H., Li P., Karsi A., Yant D.R., Dunham R.A. High levels of conservation at microsatellite loci among Ictalurid catfishes. J. Hered. 90:1999;. in press.
22. Partis L., Wells R.J. Identification of fish species using random amplified polymorphic DNA (RAPD). Mol. Cell. Probes. 10:1996;435-441.
23. Postlethwait J.H., Johnson S.L., Midson C.N., Talbot W.S., Gates M., Ballinger E.W., Africa D., Andrews R., Carl T., Eisen J.S.et al. A genetic linkage map for the zebrafish. Science. 264:1994;699-703.
24. Powell W., Orozco-Castillo C., Chalmers K.J., Provan J., Waugh R. Polymerase chain reaction-based assays for the characterization of plant genetic resources. Electrophoresis. 16:1995;1726-1730.
25. Riedy M.F., Hamilton W.J., Aquadro C.F. Excess of non-parental bands in offspring from known primate pedigree assayed using RAPD PCR. Nucleic Acids Res. 20:1992;918.
26. Scott M.P., Haymes K.M., Williams S.M. Parentage analysis using RAPD PCR. Nucleic Acids Res. 20:1992;5493.
27. Strauss, W.M., 1989. Preparation of genomic DNA from mammalian tissue. In: Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Smith, J.A., Seidman, J.G., Struhl, K. (Eds.), Current Protocols in Molecular Biology, Wiley, New York, pp. 2.2.1-2.2.2.
28. Sultmann H., Mayer W.E., Figueroa F., Tichy H., Klein J. Phylogenetic analysis of cichlid fishes using nuclear DNA markers. Mol. Biol. Evol. 12:1995;1033-1047.
29. Welsh J., McClelland M. Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res. 18:1990;7213-7218.
30. Williams J.G.K., Kubelik A.R., Livak K.J., Rafalski J.A., Tingey S.V. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:1990;6531-6535.