-
2
-
-
0002402035
-
-
In: Nei, M. and Keohn, R.K. (eds) Sinauer Associates, Sunderland, MA
-
Li, W.H. In: Nei, M. and Keohn, R.K. (eds) Evolution of Genes and Proteins. Sinauer Associates, Sunderland, MA, 1983, pp14-37.
-
(1983)
Evolution of Genes and Proteins
, pp. 14-37
-
-
Li, W.H.1
-
3
-
-
0028348636
-
Invasion and maintenance of a gene duplication
-
Clark, A.G. Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA 1994, 91: 2950-2954.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 2950-2954
-
-
Clark, A.G.1
-
4
-
-
0028342845
-
The evolution of functionally novel proteins after gene duplication
-
Hughes, A.L. The evolution of functionally novel proteins after gene duplication. Proc. R. Soc. Lond. B. Biol. Sci. 1994, 256: 119-124.
-
(1994)
Proc. R. Soc. Lond. B. Biol. Sci.
, vol.256
, pp. 119-124
-
-
Hughes, A.L.1
-
5
-
-
0030249746
-
The coevolution of gene family trees
-
Fryxell, K.J. The coevolution of gene family trees. Trends Genet. 1996, 12: 364-369.
-
(1996)
Trends Genet
, vol.12
, pp. 364-369
-
-
Fryxell, K.J.1
-
6
-
-
0030791307
-
Evolution by the birth-and-death process in multigene families of the vertebrate immune system
-
Nei, M., Gu, X., Sitnikova, T. Evolution by the birth-and-death process in multigene families of the vertebrate immune system. Proc. Natl. Acad. Sci. USA 1997, 94: 7799-7806.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 7799-7806
-
-
Nei, M.1
Gu, X.2
Sitnikova, T.3
-
7
-
-
0032893932
-
Preservation of duplicate genes by complementary, degenerative mutations
-
Force, A., Lynch, M., Pickett, F.B., Amores, A., Yan, Y.L., Postlethwait, J. Preservation of duplicate genes by complementary, degenerative mutations. Genetics 1999, 151: 1531-1545.
-
(1999)
Genetics
, vol.151
, pp. 1531-1545
-
-
Force, A.1
Lynch, M.2
Pickett, F.B.3
Amores, A.4
Yan, Y.L.5
Postlethwait, J.6
-
8
-
-
0032728408
-
Statistical methods for testing functional divergence after gene duplication
-
Gu, X. Statistical methods for testing functional divergence after gene duplication. Mol. Biol. Evol. 1999, 16: 1664-1674.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1664-1674
-
-
Gu, X.1
-
9
-
-
0035061686
-
Maximum-likelihood approach for gene family evolution under functional divergence
-
Gu, X. Maximum-likelihood approach for gene family evolution under functional divergence. Mol. Biol. Evol. 2001, 18: 453-464.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 453-464
-
-
Gu, X.1
-
10
-
-
0035895207
-
Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors
-
Gaucher, E.A., iyamoto, M.M., Benner, S.A. Function-structure analysis of proteins using covarion-based evolutionary approaches: Elongation factors. Proc. Natl. Acad. Sci. USA 2001, 98: 548-552.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 548-552
-
-
Gaucher, E.A.1
Iyamoto, M.M.2
Benner, S.A.3
-
11
-
-
0035065391
-
Differential selection after duplication in mammalian developmental genes
-
Dermitzakis, E.T., Clark, A.G. Differential selection after duplication in mammalian developmental genes. Mol. Biol. Evol. 2001,18: 557-562.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 557-562
-
-
Dermitzakis, E.T.1
Clark, A.G.2
-
12
-
-
0034922711
-
Functional divergence in the caspase gene family and altered functional constraints: Statistical analysis and prediction
-
Wang, Y., Gu, X. Functional divergence in the caspase gene family and altered functional constraints: statistical analysis and prediction. Genetics 2001, 158: 1311-1320.
-
(2001)
Genetics
, vol.158
, pp. 1311-1320
-
-
Wang, Y.1
Gu, X.2
-
13
-
-
0036107253
-
Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes
-
Gu, J., Wang, Y., Gu, X. Evolutionary analysis for functional divergence of Jak protein kinase domains and tissue-specific genes. J. Mol. Evol. 2002, 54: 725-733.
-
(2002)
J. Mol. Evol.
, vol.54
, pp. 725-733
-
-
Gu, J.1
Wang, Y.2
Gu, X.3
-
14
-
-
34548534411
-
Evolutionary analysis for functional divergence of Toll-like receptor gene family and altered functional constraints
-
(in press)
-
Zhou, H., Gu, J., Lamont, S.J., Gu, X. Evolutionary analysis for functional divergence of Toll-like receptor gene family and altered functional constraints. J. Mol. Evol. 2006 (in press).
-
(2006)
J. Mol. Evol.
-
-
Zhou, H.1
Gu, J.2
Lamont, S.J.3
Gu, X.4
-
15
-
-
0014860857
-
An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution
-
Fitch, W.M., Markowitz, E. An improved method for determining codon variability in a gene and its application to the rate of fixation of mutations in evolution. Biochem. Genet. 1970, 4: 579-593.
-
(1970)
Biochem. Genet.
, vol.4
, pp. 579-593
-
-
Fitch, W.M.1
Markowitz, E.2
-
16
-
-
0029889222
-
Identification of functional residues and secondary structure from protein multiple sequence alignment
-
Livingstone, C.D., Barton, G.J. Identification of functional residues and secondary structure from protein multiple sequence alignment. Methods Enzymol. 1996, 266: 497-512.
-
(1996)
Methods Enzymol.
, vol.266
, pp. 497-512
-
-
Livingstone, C.D.1
Barton, G.J.2
-
17
-
-
0029587166
-
A method to predict functional residues in proteins
-
Casari, G., Sander, C., Valencia, A. A method to predict functional residues in proteins. Nat. Struct. Biol. 1995, 2: 171-178.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 171-178
-
-
Casari, G.1
Sander, C.2
Valencia, A.3
-
18
-
-
0029913807
-
An evolutionary trace method defines binding surfaces common to protein families
-
Lichtarge, O., Bourne, H.R., Cohen, F.E. An evolutionary trace method defines binding surfaces common to protein families. J. Mol. Biol. 1996, 257: 342-358.
-
(1996)
J. Mol. Biol.
, vol.257
, pp. 342-358
-
-
Lichtarge, O.1
Bourne, H.R.2
Cohen, F.E.3
-
19
-
-
0032711731
-
Analysis of heregulin symmetry by weighted evolutionary tracing
-
Landgraf, R., Fischer, D., Eisenberg, D. Analysis of heregulin symmetry by weighted evolutionary tracing. Protein Eng. 1999, 12: 943-951.
-
(1999)
Protein Eng.
, vol.12
, pp. 943-951
-
-
Landgraf, R.1
Fischer, D.2
Eisenberg, D.3
-
20
-
-
0036205440
-
DIVERGE: Phylogeny-based Analysis for Functional-Structural Divergence of a Protein Family
-
Gu, X., Vander Velden K DIVERGE: Phylogeny-based Analysis for Functional-Structural Divergence of a Protein Family. Bioinformatics 2002, 18: 500-501.
-
(2002)
Bioinformatics
, vol.18
, pp. 500-501
-
-
Gu, X.1
Vander Velden, K.2
-
21
-
-
0023480940
-
Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
-
Moritz, C., Dowling, T.E., Brown, W.M. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Ann. Rev. Ecol. Syst. 1987, 18: 269-292.
-
(1987)
Ann. Rev. Ecol. Syst.
, vol.18
, pp. 269-292
-
-
Moritz, C.1
Dowling, T.E.2
Brown, W.M.3
-
23
-
-
0027525104
-
The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme
-
Yuan, J., Shaham, S., Ledoux, S., Ellis, H.M., Horvitz, H.R. The C. elegans cell death gene ced-3 encodes a protein similar to mammalian interleukin-1 beta-converting enzyme. Cell 1993, 75: 641-652.
-
(1993)
Cell
, vol.75
, pp. 641-652
-
-
Yuan, J.1
Shaham, S.2
Ledoux, S.3
Ellis, H.M.4
Horvitz, H.R.5
-
24
-
-
0029956641
-
Decreased apoptosis in the brain and premature lethality in CPP32-deficient mice
-
Kuida, K., Zheng, T.S., Na, S., Kuan, C., Yang, D., Karasuyama, H., Rakic, P., Flavell, R.A. Decreased apoptosis in the brain and premature lethality in CPP32-deficient mice. Nature 1996, 384: 368-372.
-
(1996)
Nature
, vol.384
, pp. 368-372
-
-
Kuida, K.1
Zheng, T.S.2
Na, S.3
Kuan, C.4
Yang, D.5
Karasuyama, H.6
Rakic, P.7
Flavell, R.A.8
-
25
-
-
0032548919
-
Murine caspase-11, an ICE-interacting protease, is essential for the activation of ICE
-
Wang, S., Miura, M., Jung, Y.K., Zhu, H., Li, E., Yuan, J. Murine caspase-11, an ICE-interacting protease, is essential for the activation of ICE. Cell 1998, 92: 501-509.
-
(1998)
Cell
, vol.92
, pp. 501-509
-
-
Wang, S.1
Miura, M.2
Jung, Y.K.3
Zhu, H.4
Li, E.5
Yuan, J.6
-
26
-
-
0028170376
-
Structure and mechanism of interleukin-1 beta converting enzyme
-
Wilson, K.P., Black, J.A., Thomson, J.A., Kim, E.E., Griffith, J.P., Navia, M.A., Murcko, M.A., Chambers, S.P., Aldape, R.A., Raybuck, S.A., et al. Structure and mechanism of interleukin-1 beta converting enzyme. Nature 1994, 370: 270-275.
-
(1994)
Nature
, vol.370
, pp. 270-275
-
-
Wilson, K.P.1
Black, J.A.2
Thomson, J.A.3
Kim, E.E.4
Griffith, J.P.5
Navia, M.A.6
Murcko, M.A.7
Chambers, S.P.8
Aldape, R.A.9
Raybuck, S.A.10
-
27
-
-
15844393657
-
The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis
-
Rotonda, J., Nicholson, D.W., Fazil, K.M., Gallant, M., Gareau, Y., Labelle, M., Peterson, E.P., Rasper, D.M., Ruel, R., Vaillancourt, J.P., Thornberry, N.A., Becker, J.W. The three-dimensional structure of apopain/CPP32, a key mediator of apoptosis. Nat. Struct. Biol. 1996, 7: 619-625.
-
(1996)
Nat. Struct. Biol.
, vol.7
, pp. 619-625
-
-
Rotonda, J.1
Nicholson, D.W.2
Fazil, K.M.3
Gallant, M.4
Gareau, Y.5
Labelle, M.6
Peterson, E.P.7
Rasper, D.M.8
Ruel, R.9
Vaillancourt, J.P.10
Thornberry, N.A.11
Becker, J.W.12
-
28
-
-
0023375195
-
The neighbor joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and Nei, M. The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4: 406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
29
-
-
85047698990
-
Evolutionary patterns of gene families generated in the early stage of vertebrates
-
Wang, Y., and Gu, X. Evolutionary patterns of gene families generated in the early stage of vertebrates. J. Mol. Evol. 2000, 51: 88-96.
-
(2000)
J. Mol. Evol.
, vol.51
, pp. 88-96
-
-
Wang, Y.1
Gu, X.2
-
30
-
-
0023095057
-
The complete amino acid sequence of the human aldolase C isozyme derived from genomic clones
-
Rottmann, W.H., Deselms, K.R., Niclas, J., Camerato, T., Holman, P.S., Green, C.J., Tolan, D.R. The complete amino acid sequence of the human aldolase C isozyme derived from genomic clones. Biochimie 1987, 69: 137-145.
-
(1987)
Biochimie
, vol.69
, pp. 137-145
-
-
Rottmann, W.H.1
Deselms, K.R.2
Niclas, J.3
Camerato, T.4
Holman, P.S.5
Green, C.J.6
Tolan, D.R.7
-
31
-
-
0032227861
-
Cloning and expression of human eNOS and nNOS using the baculovirus-insect cell system
-
Charles, I.G., Foxwell, N., Chubb, A. Cloning and expression of human eNOS and nNOS using the baculovirus-insect cell system. Methods Mol. Biol. 1998, 100: 51-60.
-
(1998)
Methods Mol. Biol.
, vol.100
, pp. 51-60
-
-
Charles, I.G.1
Foxwell, N.2
Chubb, A.3
-
32
-
-
0033551402
-
The myb gene family in cell growth, differentiation and apoptosis
-
Oh, I.H., and Reddy, E.P. The myb gene family in cell growth, differentiation and apoptosis. Oncogene 1999, 18: 3017-3033.
-
(1999)
Oncogene
, vol.18
, pp. 3017-3033
-
-
Oh, I.H.1
Reddy, E.P.2
-
33
-
-
0033582946
-
Coevolving protein residues: Maximum likelihood identification and relationship to structure
-
Pollock, D., Taylor, W.R., Goldman, N. Coevolving protein residues: maximum likelihood identification and relationship to structure. J. Mol. Biol. 1999, 287: 187-198.
-
(1999)
J. Mol. Biol.
, vol.287
, pp. 187-198
-
-
Pollock, D.1
Taylor, W.R.2
Goldman, N.3
-
34
-
-
0031966661
-
The structural basis of molecular adaptation
-
Golding, G.B., Dean, A.M. The structural basis of molecular adaptation. Mol. Biol. Evol. 1998, 15: 355-369.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 355-369
-
-
Golding, G.B.1
Dean, A.M.2
-
35
-
-
0032849322
-
A method for detecting positive selection at single amino acid sites
-
Suzuki, Y., Gojobori, T. A method for detecting positive selection at single amino acid sites. Mol. Biol. Evol. 1999, 16: 1315-1328.
-
(1999)
Mol. Biol. Evol.
, vol.16
, pp. 1315-1328
-
-
Suzuki, Y.1
Gojobori, T.2
|