메뉴 건너뛰기




Volumn 53, Issue 2, 2006, Pages 89-94

Amplification of DNA encoding entire type I polyketide synthase domains and linkers from Streptomyces species

Author keywords

[No Author keywords available]

Indexed keywords

POLYKETIDE SYNTHASE; PRIMER DNA;

EID: 33746729478     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-005-0050-x     Document Type: Article
Times cited : (4)

References (34)
  • 2
    • 33746662730 scopus 로고    scopus 로고
    • A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and non-ribosomal peptide synthase biosynthetic pathways
    • Ayuso A, Clark D, Gonzalez I, Salazar O, Anderson A, Genilloud O (2005) A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and non-ribosomal peptide synthase biosynthetic pathways. App Microbiol Biotech 96:539-542
    • (2005) App Microbiol Biotech , vol.96 , pp. 539-542
    • Ayuso, A.1    Clark, D.2    Gonzalez, I.3    Salazar, O.4    Anderson, A.5    Genilloud, O.6
  • 3
    • 0032876464 scopus 로고    scopus 로고
    • Ketosynthase domain probes identify two subclasses of fungal polyketide synthase genes
    • Bingle LEH, Simpson TJ, Lazarus CM (1999) Ketosynthase domain probes identify two subclasses of fungal polyketide synthase genes. Fung Gen Biol 26:209-223
    • (1999) Fung Gen Biol , vol.26 , pp. 209-223
    • Bingle, L.E.H.1    Simpson, T.J.2    Lazarus, C.M.3
  • 4
    • 0034047123 scopus 로고    scopus 로고
    • Biosynthesis of the polyene antifungal antibiotic nystatin in Streptomyces noursei ATCC 11455: Analysis of the gene cluster and deduction of the biosynthetic pathway
    • Brautaset T, Sekurova ON, Sletta H, Ellingsen TE, Strom AR, Valla S, et al. (2000) Biosynthesis of the polyene antifungal antibiotic nystatin in Streptomyces noursei ATCC 11455: Analysis of the gene cluster and deduction of the biosynthetic pathway. Chem Biol 7:395-403
    • (2000) Chem Biol , vol.7 , pp. 395-403
    • Brautaset, T.1    Sekurova, O.N.2    Sletta, H.3    Ellingsen, T.E.4    Strom, A.R.5    Valla, S.6
  • 5
    • 0026697224 scopus 로고
    • Identification of DEBS 1, DEBS 2 and DEBS 3, the multienzyme polypeptides of the erythromycin-producing polyketide synthase from Saccharopolyspora erythraea
    • Caffrey P, Bevitt DJ, Staunton J, Leadlay PF (1992) Identification of DEBS 1, DEBS 2 and DEBS 3, the multienzyme polypeptides of the erythromycin-producing polyketide synthase from Saccharopolyspora erythraea. FEBS Lett 304:225-228
    • (1992) FEBS Lett , vol.304 , pp. 225-228
    • Caffrey, P.1    Bevitt, D.J.2    Staunton, J.3    Leadlay, P.F.4
  • 6
    • 0034930476 scopus 로고    scopus 로고
    • Amphotericin biosynthesis in Streptomyces nodosus: Deductions from analysis of polyketide synthase and late genes
    • Caffrey P, Lynch S, Flood E, Finnan S, Oliynyk M (2001) Amphotericin biosynthesis in Streptomyces nodosus: Deductions from analysis of polyketide synthase and late genes. Chem Biol 8:713-723
    • (2001) Chem Biol , vol.8 , pp. 713-723
    • Caffrey, P.1    Lynch, S.2    Flood, E.3    Finnan, S.4    Oliynyk, M.5
  • 7
    • 0036148337 scopus 로고    scopus 로고
    • The candicidin gene cluster from Streptomyces griseus IMRU 3570
    • Campelo AB, Gil JA (2002) The candicidin gene cluster from Streptomyces griseus IMRU 3570. Microbiology 148:51-59
    • (2002) Microbiology , vol.148 , pp. 51-59
    • Campelo, A.B.1    Gil, J.A.2
  • 8
    • 0031259679 scopus 로고    scopus 로고
    • Molecular recognition of diketide substrates by a β-ketoacyl-acyl carrier protein synthase domain within a bimodular polyketide synthase
    • Chuck JA, McPherson M, Huang H, Jacobsen Khosla JR, Khosla C, Cane DE (1997) Molecular recognition of diketide substrates by a β-ketoacyl-acyl carrier protein synthase domain within a bimodular polyketide synthase. Chem Biol 4:757-766
    • (1997) Chem Biol , vol.4 , pp. 757-766
    • Chuck, J.A.1    McPherson, M.2    Huang, H.3    Jacobsen Khosla, J.R.4    Khosla, C.5    Cane, D.E.6
  • 9
    • 0346035740 scopus 로고    scopus 로고
    • Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products
    • Courtois S, Cappellano CM, Ball M, Francou FX, Normand P, Helynck G, et al. (2003) Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products. Appl Environ Microbiol 69:49-55
    • (2003) Appl Environ Microbiol , vol.69 , pp. 49-55
    • Courtois, S.1    Cappellano, C.M.2    Ball, M.3    Francou, F.X.4    Normand, P.5    Helynck, G.6
  • 10
    • 0028882479 scopus 로고
    • Cloning and characterization of a polyketide synthase gene from Streptomyces fradiae Tu2717, which carries the genes for biosynthesis of the angucycline antibiotic urdamycin A and a gene probably involved in its oxygenation
    • Decker H, Haag S (1995) Cloning and characterization of a polyketide synthase gene from Streptomyces fradiae Tu2717, which carries the genes for biosynthesis of the angucycline antibiotic urdamycin A and a gene probably involved in its oxygenation. J Bacteriol 177:6126-6136
    • (1995) J Bacteriol , vol.177 , pp. 6126-6136
    • Decker, H.1    Haag, S.2
  • 11
    • 4644371642 scopus 로고    scopus 로고
    • Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones
    • Ginolhac A, Jarrin C, Gillet B, Robe P, Pujic P, Tuphile K, et al. (2004) Phylogenetic analysis of polyketide synthase I domains from soil metagenomic libraries allows selection of promising clones. Appl Environ Microbiol 70:5522-5527
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5522-5527
    • Ginolhac, A.1    Jarrin, C.2    Gillet, B.3    Robe, P.4    Pujic, P.5    Tuphile, K.6
  • 12
    • 0033982651 scopus 로고    scopus 로고
    • Role of linkers in communication between protein modules
    • Gokhale RS, Kholsa C (2000) Role of linkers in communication between protein modules. Curr Opin Chem Biol 4:22-27
    • (2000) Curr Opin Chem Biol , vol.4 , pp. 22-27
    • Gokhale, R.S.1    Kholsa, C.2
  • 13
    • 0028841535 scopus 로고
    • Divergent sequence motifs correlated with the substrate specificity of (methyl)malonyl-CoA: Acyl carrier protein transacylase domains in modular polyketide synthase
    • Haydock SF, Aparicio JF, Molnar I, Schwecke T, Khaw LE, Konig A, et al. (1995) Divergent sequence motifs correlated with the substrate specificity of (methyl)malonyl-CoA: Acyl carrier protein transacylase domains in modular polyketide synthase. FEBS Lett 374:246-248
    • (1995) FEBS Lett , vol.374 , pp. 246-248
    • Haydock, S.F.1    Aparicio, J.F.2    Molnar, I.3    Schwecke, T.4    Khaw, L.E.5    Konig, A.6
  • 14
    • 0001747786 scopus 로고    scopus 로고
    • Genetic contributions to understanding polyketide synthases
    • Hopwood DA (1997) Genetic contributions to understanding polyketide synthases. Chem Rev 97:2465-2498
    • (1997) Chem Rev , vol.97 , pp. 2465-2498
    • Hopwood, D.A.1
  • 15
    • 0030693291 scopus 로고    scopus 로고
    • Identification and characterization of the niddamycin polyketide synthase genes from Streptomyces caelestis
    • Kakavas SJ, Katz L, Stassi D (1997) Identification and characterization of the niddamycin polyketide synthase genes from Streptomyces caelestis. J Bacteriol 179:7515-7522
    • (1997) J Bacteriol , vol.179 , pp. 7515-7522
    • Kakavas, S.J.1    Katz, L.2    Stassi, D.3
  • 17
    • 0035843184 scopus 로고    scopus 로고
    • Modular enzymes
    • Khosla C, Harbury PB (2001) Modular enzymes. Nature 409:247-252
    • (2001) Nature , vol.409 , pp. 247-252
    • Khosla, C.1    Harbury, P.B.2
  • 18
    • 2942674459 scopus 로고    scopus 로고
    • An efficient method for creation and functional analysis of libraries of hybrid type I polyketide synthases
    • Kim BS, Sherman DH, Reynolds KA (2004) An efficient method for creation and functional analysis of libraries of hybrid type I polyketide synthases. Prot Eng Design Select 17:277-284
    • (2004) Prot Eng Design Select , vol.17 , pp. 277-284
    • Kim, B.S.1    Sherman, D.H.2    Reynolds, K.A.3
  • 19
    • 0242669333 scopus 로고    scopus 로고
    • Intermodular communication in modular polyketide synthases: Structural and mutational analysis of linker mediated protein-protein recognition
    • Kumar P, Li Q, Cane DE, Khosla C (2003) Intermodular communication in modular polyketide synthases: Structural and mutational analysis of linker mediated protein-protein recognition. J Am Chem Soc 125:4097-4102
    • (2003) J Am Chem Soc , vol.125 , pp. 4097-4102
    • Kumar, P.1    Li, Q.2    Cane, D.E.3    Khosla, C.4
  • 20
    • 0033514424 scopus 로고    scopus 로고
    • Dissecting the role of acyltransferase domains of modular polyketide synthases in the choice and stereochemical fate of extender units
    • Lau J, Fu H, Cane DE, Khosla C (1999) Dissecting the role of acyltransferase domains of modular polyketide synthases in the choice and stereochemical fate of extender units. Biochemistry 38:1643-1651
    • (1999) Biochemistry , vol.38 , pp. 1643-1651
    • Lau, J.1    Fu, H.2    Cane, D.E.3    Khosla, C.4
  • 21
    • 0033515090 scopus 로고    scopus 로고
    • Multiple genetic modifications of the erythromycin polyketide synthase to produce a library of novel unnaturalnatural products
    • USA
    • McDaniel R, Thamchaipenet A, Gustafsson C, Fu H, Betlach M, et al. (1999) Multiple genetic modifications of the erythromycin polyketide synthase to produce a library of novel unnaturalnatural products. Proc Natl Acad Sci USA 96:1846-1851
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 1846-1851
    • McDaniel, R.1    Thamchaipenet, A.2    Gustafsson, C.3    Fu, H.4    Betlach, M.5
  • 23
    • 0029856517 scopus 로고    scopus 로고
    • 6-Deoxyerythronolide B synthase 1 is specifically acylated by a diketide intermediate at the b-ketoacyl-ACP synthase domain of module 2
    • Tsukamoto N, Chuck J, Luo G, Kao CM, Khosla C, Cane DE (1996) 6-Deoxyerythronolide B synthase 1 is specifically acylated by a diketide intermediate at the b-ketoacyl-ACP synthase domain of module 2. Biochemistry 35:15244-15248
    • (1996) Biochemistry , vol.35 , pp. 15244-15248
    • Tsukamoto, N.1    Chuck, J.2    Luo, G.3    Kao, C.M.4    Khosla, C.5    Cane, D.E.6
  • 25
    • 0242695043 scopus 로고    scopus 로고
    • High yield preparation of genomic DNA from Streptomyces
    • Nikodinovic J, Barrow KD, Chuck JA (2003) High yield preparation of genomic DNA from Streptomyces. Biotechnology 35:932-936
    • (2003) Biotechnology , vol.35 , pp. 932-936
    • Nikodinovic, J.1    Barrow, K.D.2    Chuck, J.A.3
  • 26
    • 0035834039 scopus 로고    scopus 로고
    • Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites
    • USA
    • Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, et al. (2001) Genome sequence of an industrial microorganism Streptomyces avermitilis: Deducing the ability of producing secondary metabolites. Proc Natl Acad Sci USA 98:12215-12220
    • (2001) Proc Natl Acad Sci , vol.98 , pp. 12215-12220
    • Omura, S.1    Ikeda, H.2    Ishikawa, J.3    Hanamoto, A.4    Takahashi, C.5    Shinose, M.6
  • 27
    • 0024321833 scopus 로고
    • Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens
    • Pernodet JL, Boccard F, Alegre MT, Gagnat J, Guerineau M (1989) Organization and nucleotide sequence analysis of a ribosomal RNA gene cluster from Streptomyces ambofaciens. Gene 79:33-46
    • (1989) Gene , vol.79 , pp. 33-46
    • Pernodet, J.L.1    Boccard, F.2    Alegre, M.T.3    Gagnat, J.4    Guerineau, M.5
  • 28
    • 0035951074 scopus 로고    scopus 로고
    • Alteration of the substrate specificity of a modular polyketide synthase acyltransferase domain through site-specific mutations
    • Reeves CD, Murli S, Ashley G, Wendt-Piagentini M, Hutchinson CR, McDaniel R (2001) Alteration of the substrate specificity of a modular polyketide synthase acyltransferase domain through site-specific mutations. Biochemistry 40:15464-15470
    • (2001) Biochemistry , vol.40 , pp. 15464-15470
    • Reeves, C.D.1    Murli, S.2    Ashley, G.3    Wendt-Piagentini, M.4    Hutchinson, C.R.5    McDaniel, R.6
  • 29
    • 0038544618 scopus 로고    scopus 로고
    • The enzymology of combinatorial biosynthesis
    • Reeves CD (2003) The enzymology of combinatorial biosynthesis. Crit Rev Biotechnol 23:95-147
    • (2003) Crit Rev Biotechnol , vol.23 , pp. 95-147
    • Reeves, C.D.1
  • 30
    • 0030690924 scopus 로고    scopus 로고
    • A study of iterative type II polyketide synthases using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms
    • Seow KT, Meurer G, Gerlitz M, Pienkowski EW, Hutchinson RC, Davies J (1997) A study of iterative type II polyketide synthases using bacterial genes cloned from soil DNA: A means to access and use genes from uncultured microorganisms. J Bacteriol 179:7360-7368
    • (1997) J Bacteriol , vol.179 , pp. 7360-7368
    • Seow, K.T.1    Meurer, G.2    Gerlitz, M.3    Pienkowski, E.W.4    Hutchinson, R.C.5    Davies, J.6
  • 31
    • 0001768101 scopus 로고
    • Conserved residues in condensing enzymes domains of fatty acid synthases and related sequences
    • Siggaard-Andersen M (1993) Conserved residues in condensing enzymes domains of fatty acid synthases and related sequences. Prot Seq Data Anal 5:325-335
    • (1993) Prot Seq Data Anal , vol.5 , pp. 325-335
    • Siggaard-Andersen, M.1
  • 32
    • 0035957078 scopus 로고    scopus 로고
    • Intermodular communication in polyketide synthases: Comparing the role of protein-protein interactions to those in other multidomain proteins
    • Tsuji SY, Wu N, Khosla C (2001) Intermodular communication in polyketide synthases: Comparing the role of protein-protein interactions to those in other multidomain proteins. Biochemistry 40:2317-2325
    • (2001) Biochemistry , vol.40 , pp. 2317-2325
    • Tsuji, S.Y.1    Wu, N.2    Khosla, C.3
  • 33
    • 0037117747 scopus 로고    scopus 로고
    • Quantitative analysis of the relative contributions of donor acyl carrier proteins, acceptor ketosynthases, and linker regions to intermodular transfer of intermediates in hybrid polyketide synthases
    • Wu N, Cane DE, Khosla C (2002) Quantitative analysis of the relative contributions of donor acyl carrier proteins, acceptor ketosynthases, and linker regions to intermodular transfer of intermediates in hybrid polyketide synthases Biochemistry 41:5056-5066
    • (2002) Biochemistry , vol.41 , pp. 5056-5066
    • Wu, N.1    Cane, D.E.2    Khosla, C.3
  • 34
    • 0032738419 scopus 로고    scopus 로고
    • Multiplasmid approach to preparing large libraries of polyketides
    • USA
    • Xue Q, Ashley G, Hutchinson CR, Santi DV (1999) Multiplasmid approach to preparing large libraries of polyketides. Proc Natl Acad Sci USA 96:11740-1174
    • (1999) Proc Natl Acad Sci , vol.96 , pp. 11740-21174
    • Xue, Q.1    Ashley, G.2    Hutchinson, C.R.3    Santi, D.V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.