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Volumn 8, Issue 2, 2006, Pages 113-122

Extracting haplotypes from diploid organisms

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

EID: 33746415146     PISSN: 14673037     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (9)

References (39)
  • 1
    • 0035058585 scopus 로고    scopus 로고
    • Haplotypes vs single marker linkage disequilibrium tests: What do we gain?
    • Akey, J., Jin, L., and Xiong, M. (2001). Haplotypes vs single marker linkage disequilibrium tests: what do we gain? Eur. J. Hum. Genet. 9:291-300
    • (2001) Eur. J. Hum. Genet. , vol.9 , pp. 291-300
    • Akey, J.1    Jin, L.2    Xiong, M.3
  • 2
    • 0033039512 scopus 로고    scopus 로고
    • Optical mapping: An approach for fine mapping
    • Aston, C., Hiort, C., and Schwartz, D.C. (1999). Optical mapping: An approach for fine mapping. Methods Enzymol. 303: 55-73
    • (1999) Methods Enzymol. , vol.303 , pp. 55-73
    • Aston, C.1    Hiort, C.2    Schwartz, D.C.3
  • 4
    • 0348013052 scopus 로고    scopus 로고
    • Clone-Based Systematic Haplotyping (CSH): A procedure for physical haplotyping of whole genomes
    • Burgtorf, C., Kepper, P., Hoehe, M., Schmitt, C., Reinhardt, R., Lehrach, H., and Sauer, S. (2003). Clone-Based Systematic Haplotyping (CSH): A procedure for physical haplotyping of whole genomes. Genome Res. 13: 2717-2724
    • (2003) Genome Res. , vol.13 , pp. 2717-2724
    • Burgtorf, C.1    Kepper, P.2    Hoehe, M.3    Schmitt, C.4    Reinhardt, R.5    Lehrach, H.6    Sauer, S.7
  • 6
    • 0344033602 scopus 로고    scopus 로고
    • Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power
    • Chapman, J.M., Cooper, J.D., Todd, J.A., and Clayton, D.G. (2003) Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power. Hum. Hered. 56:18-31
    • (2003) Hum. Hered. , vol.56 , pp. 18-31
    • Chapman, J.M.1    Cooper, J.D.2    Todd, J.A.3    Clayton, D.G.4
  • 7
    • 35248850189 scopus 로고    scopus 로고
    • 'Empirical exploration of perfect phylogeny haplotyping and haplotypers'
    • Warnow, T. and Zhu, B. (eds), Springer, Big Sky, MT
    • Chung, R.H. and Gusfield, D. (2003), 'Empirical exploration of perfect phylogeny haplotyping and haplotypers', in: Warnow, T. and Zhu, B. (eds), Lecture Notes in Computer Science, Springer, Big Sky, MT, pp. 5-19.
    • (2003) Lecture Notes in Computer Science , pp. 5-19
    • Chung, R.H.1    Gusfield, D.2
  • 8
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of diploid populations
    • Clark, A.G. (1990). Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7:111-122
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 9
    • 33646196279 scopus 로고    scopus 로고
    • SNPHAP a program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects
    • Ver 1.0
    • Clayton, D. (2001). SNPHAP a program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects. Ver 1.0
    • (2001)
    • Clayton, D.1
  • 10
    • 0037560709 scopus 로고    scopus 로고
    • Direct molecular typing of long-range genomic DNA with M1-PCR
    • Ding, C., and Cantor, C.R. (2003). Direct molecular typing of long-range genomic DNA with M1-PCR. Proc. Natl. Acad. Sci. USA 100:7449-7453
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 7449-7453
    • Ding, C.1    Cantor, C.R.2
  • 11
    • 33746459588 scopus 로고    scopus 로고
    • A Markov chain approach to reconstruction of long haplotypes
    • Pac. Symp. Biocomput, Fearnhead, P., and Donnelly, P. (2001). Estimating recombination rates from population genetic data
    • Eronen, L., Geerts, F. and Toivonen, H. (2004). A Markov chain approach to reconstruction of long haplotypes. Pac. Symp. Biocomput, Fearnhead, P., and Donnelly, P. (2001). Estimating recombination rates from population genetic data. Genetics 159:1299-1318
    • (2004) Genetics , vol.159 , pp. 1299-1318
    • Eronen, L.1    Geerts, F.2    Toivonen, H.3
  • 12
    • 0141739796 scopus 로고    scopus 로고
    • Haplotypes and the systematic analysis of genetic variation in genes and genomes
    • Hoehe, M.R. (2003). Haplotypes and the systematic analysis of genetic variation in genes and genomes. Pharmacogenomics. 4:547-570
    • (2003) Pharmacogenomics , vol.4 , pp. 547-570
    • Hoehe, M.R.1
  • 14
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • International HapMap Consortium
    • International HapMap Consortium (2005). A haplotype map of the human genome. Nature 437:1299-1320
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 15
    • 3142769862 scopus 로고    scopus 로고
    • Importance sampling on coalescent histories. II. Subdivided population models
    • De Iorio, M., and Griffiths, R. (2004). Importance sampling on coalescent histories. II. Subdivided population models. Adv. Appl. Probab. 36:434-454
    • (2004) Adv. Appl. Probab. , vol.36 , pp. 434-454
    • De Iorio, M.1    Griffiths, R.2
  • 16
    • 0034789532 scopus 로고    scopus 로고
    • Haplotype tagging for the identification of common disease genes
    • Johnson, G.C., Esposito, L., Barratt, B.J., et al. (2001) Haplotype tagging for the identification of common disease genes. Nat. Genet. 29:233-237
    • (2001) Nat. Genet. , vol.29 , pp. 233-237
    • Johnson, G.C.1    Esposito, L.2    Barratt, B.J.3
  • 17
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E.S., Linton, L.M., Birren, B., et al (2001). Initial sequencing and analysis of the human genome. Nature 409:860-921
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 18
    • 0035063320 scopus 로고    scopus 로고
    • A chronology of fine-scale gene mapping by linkage disequilibrium
    • Lazzeroni, L. (2001). A chronology of fine-scale gene mapping by linkage disequilibrium. Stat. Methods Med. Res. 10:57-76
    • (2001) Stat. Methods Med. Res. , vol.10 , pp. 57-76
    • Lazzeroni, L.1
  • 22
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single nucleotide polymorphisms
    • Niu, T., Qin, Z.S., Xu, X., Liu, J.S. (2002). Bayesian haplotype inference for multiple linked single nucleotide polymorphisms. Am. J. Hum. Genet. 70:157-169
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 23
    • 4344652284 scopus 로고    scopus 로고
    • Long-range (17.7 kb) allele-specific polymerase chain reaction method for direct haplotyping of R117H and IVS-8 mutations of the cystic fibrosis transmembrane regulator gene
    • Pont-Kingdon, G., Jama, M., Miller, C., Millson, A., and Lyon, E. (2004). Long-range (17.7 kb) allele-specific polymerase chain reaction method for direct haplotyping of R117H and IVS-8 mutations of the cystic fibrosis transmembrane regulator gene. Mol. Diagn. 6(3): 264-270
    • (2004) Mol. Diagn. , vol.6 , Issue.3 , pp. 264-270
    • Pont-Kingdon, G.1    Jama, M.2    Miller, C.3    Millson, A.4    Lyon, E.5
  • 24
    • 0037167852 scopus 로고    scopus 로고
    • Detecting recent positive selection in the human genome from haplotype structure
    • Sabeti, P.C., Reich, D.E., Higgins, J.M. et al. (2002). Detecting recent positive selection in the human genome from haplotype structure. Nature 419:832-837
    • (2002) Nature , vol.419 , pp. 832-837
    • Sabeti, P.C.1    Reich, D.E.2    Higgins, J.M.3
  • 25
    • 27544473944 scopus 로고    scopus 로고
    • A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
    • Salem, M., Wessel, J., and Schork, N.J. (2005). A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Hum. Genomics 2:39-66
    • (2005) Hum. Genomics , vol.2 , pp. 39-66
    • Salem, M.1    Wessel, J.2    Schork, N.J.3
  • 26
    • 33746419411 scopus 로고    scopus 로고
    • 'Arlequin version 2.001: A software for population genetics data analysis'
    • University of Geneva, Switzerland
    • Schneidler, S., Roessli, D., and Excoffier, L. (2002). 'Arlequin version 2.001: A software for population genetics data analysis', Genetics and Biometry Laboratory, University of Geneva, Switzerland.
    • (2002) Genetics and Biometry Laboratory
    • Schneidler, S.1    Roessli, D.2    Excoffier, L.3
  • 27
    • 0242691208 scopus 로고    scopus 로고
    • A compariosn of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens, M., and Donnelly, P. (2003). A compariosn of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73:1162-1169
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 28
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens, M., Smith, N.J., and Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data Am J. Hum. Genet. 68:978-989
    • (2001) Am J. Hum. Genet. , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.J.2    Donnelly, P.3
  • 30
    • 1642313766 scopus 로고    scopus 로고
    • A new algorithm for haplotype-based association analysis: The stochastic-EM algorithm
    • Tregouet, D.A., Escolano, S., Tiret, L. et al. (2004). A new algorithm for haplotype-based association analysis: The stochastic-EM algorithm. Ann. Hum. Genet. 68:165-177
    • (2004) Ann. Hum. Genet. , vol.68 , pp. 165-177
    • Tregouet, D.A.1    Escolano, S.2    Tiret, L.3
  • 31
    • 0035895505 scopus 로고    scopus 로고
    • The sequence of the human genome
    • Venter, J.C., Adams, M.D., Myers, E.W et al. (2001). The sequence of the human genome. Science 291:1304-1351
    • (2001) Science , vol.291 , pp. 1304-1351
    • Venter, J.C.1    Adams, M.D.2    Myers, E.W.3
  • 32
    • 0141617556 scopus 로고    scopus 로고
    • Haplotype inference by maximum parsimony
    • Wang, L. and Xu, Y. (2003). Haplotype inference by maximum parsimony. Bioinformatics 19:1773-1780
    • (2003) Bioinformatics , vol.19 , pp. 1773-1780
    • Wang, L.1    Xu, Y.2
  • 35
    • 33746388765 scopus 로고    scopus 로고
    • Fundamentals of fungal molecular population genetic analysis
    • Xu, J. (2006). Fundamentals offungal molecular population genetic analysis. Curr. Issues Mol. Biol. 8:75-90
    • (2006) Curr. Issues Mol. Biol. , vol.8 , pp. 75-90
    • Xu, J.1
  • 36
    • 0041923940 scopus 로고    scopus 로고
    • Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans
    • Xu, J., and Mitchell, T.G. (2003). Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans. Microbiology 149:2147-2154
    • (2003) Microbiology , vol.149 , pp. 2147-2154
    • Xu, J.1    Mitchell, T.G.2
  • 37
    • 0033675677 scopus 로고    scopus 로고
    • Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans
    • Xu, J., Vilgalys, R., and Mitchell, T.G. (2000). Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol. Ecol. 9:1471-1482
    • (2000) Mol. Ecol. , vol.9 , pp. 1471-1482
    • Xu, J.1    Vilgalys, R.2    Mitchell, T.G.3
  • 38
    • 0036146654 scopus 로고    scopus 로고
    • Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD
    • Xu, J., Luo, G., Vilgalys, R., Brandt, M.E., and Mitchell, T.G. (2002). Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology 148:203-212
    • (2002) Microbiology , vol.148 , pp. 203-212
    • Xu, J.1    Luo, G.2    Vilgalys, R.3    Brandt, M.E.4    Mitchell, T.G.5
  • 39
    • 0038406155 scopus 로고    scopus 로고
    • A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies
    • Zhao, L.P., Li, S.S. and Khalid, N. (2003). A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies. Am. J. Hum. Genet. 72:1231-1250
    • (2003) Am. J. Hum. Genet. , vol.72 , pp. 1231-1250
    • Zhao, L.P.1    Li, S.S.2    Khalid, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.