-
1
-
-
0035058585
-
Haplotypes vs single marker linkage disequilibrium tests: What do we gain?
-
Akey, J., Jin, L., and Xiong, M. (2001). Haplotypes vs single marker linkage disequilibrium tests: what do we gain? Eur. J. Hum. Genet. 9:291-300
-
(2001)
Eur. J. Hum. Genet.
, vol.9
, pp. 291-300
-
-
Akey, J.1
Jin, L.2
Xiong, M.3
-
2
-
-
0033039512
-
Optical mapping: An approach for fine mapping
-
Aston, C., Hiort, C., and Schwartz, D.C. (1999). Optical mapping: An approach for fine mapping. Methods Enzymol. 303: 55-73
-
(1999)
Methods Enzymol.
, vol.303
, pp. 55-73
-
-
Aston, C.1
Hiort, C.2
Schwartz, D.C.3
-
3
-
-
0004270170
-
-
John Wiley and Sons, Inc
-
Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A., and Struhl, K. (2000). Current Protocols in Molecular Biology. John Wiley and Sons, Inc.
-
(2000)
Current Protocols in Molecular Biology
-
-
Ausubel, F.M.1
Brent, R.2
Kingston, R.E.3
Moore, D.D.4
Seidman, J.G.5
Smith, J.A.6
Struhl, K.7
-
4
-
-
0348013052
-
Clone-Based Systematic Haplotyping (CSH): A procedure for physical haplotyping of whole genomes
-
Burgtorf, C., Kepper, P., Hoehe, M., Schmitt, C., Reinhardt, R., Lehrach, H., and Sauer, S. (2003). Clone-Based Systematic Haplotyping (CSH): A procedure for physical haplotyping of whole genomes. Genome Res. 13: 2717-2724
-
(2003)
Genome Res.
, vol.13
, pp. 2717-2724
-
-
Burgtorf, C.1
Kepper, P.2
Hoehe, M.3
Schmitt, C.4
Reinhardt, R.5
Lehrach, H.6
Sauer, S.7
-
5
-
-
3042560428
-
DNA mapping using microfluidic stretching and single-molecule detection of fluorescent site-specific tags
-
Chan, E.Y., Goncalves, N.M., Haeusler, R.A., Hatch, A.J., Larson, J.W., Maletta, A.M., Yantz, G.R., Carstea, E.D., Fuchs, M., Wong, G.G., Gullans, S.R., and Gilmanshin, R. (2004). DNA mapping using microfluidic stretching and single-molecule detection of fluorescent site-specific tags. Genome Res. 14: 1137-1146
-
(2004)
Genome Res.
, vol.14
, pp. 1137-1146
-
-
Chan, E.Y.1
Goncalves, N.M.2
Haeusler, R.A.3
Hatch, A.J.4
Larson, J.W.5
Maletta, A.M.6
Yantz, G.R.7
Carstea, E.D.8
Fuchs, M.9
Wong, G.G.10
Gullans, S.R.11
Gilmanshin, R.12
-
6
-
-
0344033602
-
Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power
-
Chapman, J.M., Cooper, J.D., Todd, J.A., and Clayton, D.G. (2003) Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power. Hum. Hered. 56:18-31
-
(2003)
Hum. Hered.
, vol.56
, pp. 18-31
-
-
Chapman, J.M.1
Cooper, J.D.2
Todd, J.A.3
Clayton, D.G.4
-
7
-
-
35248850189
-
'Empirical exploration of perfect phylogeny haplotyping and haplotypers'
-
Warnow, T. and Zhu, B. (eds), Springer, Big Sky, MT
-
Chung, R.H. and Gusfield, D. (2003), 'Empirical exploration of perfect phylogeny haplotyping and haplotypers', in: Warnow, T. and Zhu, B. (eds), Lecture Notes in Computer Science, Springer, Big Sky, MT, pp. 5-19.
-
(2003)
Lecture Notes in Computer Science
, pp. 5-19
-
-
Chung, R.H.1
Gusfield, D.2
-
8
-
-
0025269067
-
Inference of haplotypes from PCR-amplified samples of diploid populations
-
Clark, A.G. (1990). Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7:111-122
-
(1990)
Mol. Biol. Evol.
, vol.7
, pp. 111-122
-
-
Clark, A.G.1
-
9
-
-
33646196279
-
SNPHAP a program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects
-
Ver 1.0
-
Clayton, D. (2001). SNPHAP a program for estimating frequencies of haplotypes of large numbers of diallelic markers from unphased genotype data from unrelated subjects. Ver 1.0
-
(2001)
-
-
Clayton, D.1
-
10
-
-
0037560709
-
Direct molecular typing of long-range genomic DNA with M1-PCR
-
Ding, C., and Cantor, C.R. (2003). Direct molecular typing of long-range genomic DNA with M1-PCR. Proc. Natl. Acad. Sci. USA 100:7449-7453
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 7449-7453
-
-
Ding, C.1
Cantor, C.R.2
-
11
-
-
33746459588
-
A Markov chain approach to reconstruction of long haplotypes
-
Pac. Symp. Biocomput, Fearnhead, P., and Donnelly, P. (2001). Estimating recombination rates from population genetic data
-
Eronen, L., Geerts, F. and Toivonen, H. (2004). A Markov chain approach to reconstruction of long haplotypes. Pac. Symp. Biocomput, Fearnhead, P., and Donnelly, P. (2001). Estimating recombination rates from population genetic data. Genetics 159:1299-1318
-
(2004)
Genetics
, vol.159
, pp. 1299-1318
-
-
Eronen, L.1
Geerts, F.2
Toivonen, H.3
-
12
-
-
0141739796
-
Haplotypes and the systematic analysis of genetic variation in genes and genomes
-
Hoehe, M.R. (2003). Haplotypes and the systematic analysis of genetic variation in genes and genomes. Pharmacogenomics. 4:547-570
-
(2003)
Pharmacogenomics
, vol.4
, pp. 547-570
-
-
Hoehe, M.R.1
-
13
-
-
19744383725
-
A simple, bead-based approach for multi-SNP molecular haplotyping
-
Hurley, J.D., Engle, L.J., Davis, J.T., Welsh, A.M., and Landers, J.E. (2005). A simple, bead-based approach for multi-SNP molecular haplotyping. Nucleic Acids Res. 32(22): e186-e186
-
(2005)
Nucleic Acids Res.
, vol.32
, Issue.22
-
-
Hurley, J.D.1
Engle, L.J.2
Davis, J.T.3
Welsh, A.M.4
Landers, J.E.5
-
14
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium
-
International HapMap Consortium (2005). A haplotype map of the human genome. Nature 437:1299-1320
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
15
-
-
3142769862
-
Importance sampling on coalescent histories. II. Subdivided population models
-
De Iorio, M., and Griffiths, R. (2004). Importance sampling on coalescent histories. II. Subdivided population models. Adv. Appl. Probab. 36:434-454
-
(2004)
Adv. Appl. Probab.
, vol.36
, pp. 434-454
-
-
De Iorio, M.1
Griffiths, R.2
-
16
-
-
0034789532
-
Haplotype tagging for the identification of common disease genes
-
Johnson, G.C., Esposito, L., Barratt, B.J., et al. (2001) Haplotype tagging for the identification of common disease genes. Nat. Genet. 29:233-237
-
(2001)
Nat. Genet.
, vol.29
, pp. 233-237
-
-
Johnson, G.C.1
Esposito, L.2
Barratt, B.J.3
-
17
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E.S., Linton, L.M., Birren, B., et al (2001). Initial sequencing and analysis of the human genome. Nature 409:860-921
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
18
-
-
0035063320
-
A chronology of fine-scale gene mapping by linkage disequilibrium
-
Lazzeroni, L. (2001). A chronology of fine-scale gene mapping by linkage disequilibrium. Stat. Methods Med. Res. 10:57-76
-
(2001)
Stat. Methods Med. Res.
, vol.10
, pp. 57-76
-
-
Lazzeroni, L.1
-
19
-
-
0036842635
-
Haplotype inference in random population samples
-
Lin, S., Cutler, D.J., Zwick, M.E., and Chakravarti, A. (2002). Haplotype inference in random population samples. Am. J. Hum. Genet. 71:1129-1137
-
(2002)
Am. J. Hum. Genet.
, vol.71
, pp. 1129-1137
-
-
Lin, S.1
Cutler, D.J.2
Zwick, M.E.3
Chakravarti, A.4
-
20
-
-
33344458848
-
A comparison of phasing algorithms for trios and unrelated individuals
-
for the International HapMap Consortium
-
Marchini, J., Cutler, D., Patterson, N., Stephens, M., Eskin, E., Halperin, E. Lin, S., Qin, Z.S., Munro, H.M., Abecasis, G.R., and Donnelly, P. for the International HapMap Consortium. (2006). A comparison of phasing algorithms for trios and unrelated individuals. Am. J. Hum. Genet. 78:437-450
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 437-450
-
-
Marchini, J.1
Cutler, D.2
Patterson, N.3
Stephens, M.4
Eskin, E.5
Halperin, E.6
Lin, S.7
Qin, Z.S.8
Munro, H.M.9
Abecasis, G.R.10
Donnelly, P.11
-
21
-
-
0038285034
-
Digital genotyping and haplotyping with polymerase colonies
-
Mitra, R.D., Butty, V.L., Shendure, J., Williams, B.R., Housman, D.E., and Church, G.M. (2003). Digital genotyping and haplotyping with polymerase colonies. Proc. Natl. Acad. Sci. USA 100: 5926-5931
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 5926-5931
-
-
Mitra, R.D.1
Butty, V.L.2
Shendure, J.3
Williams, B.R.4
Housman, D.E.5
Church, G.M.6
-
22
-
-
0036138183
-
Bayesian haplotype inference for multiple linked single nucleotide polymorphisms
-
Niu, T., Qin, Z.S., Xu, X., Liu, J.S. (2002). Bayesian haplotype inference for multiple linked single nucleotide polymorphisms. Am. J. Hum. Genet. 70:157-169
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 157-169
-
-
Niu, T.1
Qin, Z.S.2
Xu, X.3
Liu, J.S.4
-
23
-
-
4344652284
-
Long-range (17.7 kb) allele-specific polymerase chain reaction method for direct haplotyping of R117H and IVS-8 mutations of the cystic fibrosis transmembrane regulator gene
-
Pont-Kingdon, G., Jama, M., Miller, C., Millson, A., and Lyon, E. (2004). Long-range (17.7 kb) allele-specific polymerase chain reaction method for direct haplotyping of R117H and IVS-8 mutations of the cystic fibrosis transmembrane regulator gene. Mol. Diagn. 6(3): 264-270
-
(2004)
Mol. Diagn.
, vol.6
, Issue.3
, pp. 264-270
-
-
Pont-Kingdon, G.1
Jama, M.2
Miller, C.3
Millson, A.4
Lyon, E.5
-
24
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti, P.C., Reich, D.E., Higgins, J.M. et al. (2002). Detecting recent positive selection in the human genome from haplotype structure. Nature 419:832-837
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
-
25
-
-
27544473944
-
A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
-
Salem, M., Wessel, J., and Schork, N.J. (2005). A comprehensive literature review of haplotyping software and methods for use with unrelated individuals. Hum. Genomics 2:39-66
-
(2005)
Hum. Genomics
, vol.2
, pp. 39-66
-
-
Salem, M.1
Wessel, J.2
Schork, N.J.3
-
26
-
-
33746419411
-
'Arlequin version 2.001: A software for population genetics data analysis'
-
University of Geneva, Switzerland
-
Schneidler, S., Roessli, D., and Excoffier, L. (2002). 'Arlequin version 2.001: A software for population genetics data analysis', Genetics and Biometry Laboratory, University of Geneva, Switzerland.
-
(2002)
Genetics and Biometry Laboratory
-
-
Schneidler, S.1
Roessli, D.2
Excoffier, L.3
-
27
-
-
0242691208
-
A compariosn of Bayesian methods for haplotype reconstruction from population genotype data
-
Stephens, M., and Donnelly, P. (2003). A compariosn of Bayesian methods for haplotype reconstruction from population genotype data. Am. J. Hum. Genet. 73:1162-1169
-
(2003)
Am. J. Hum. Genet.
, vol.73
, pp. 1162-1169
-
-
Stephens, M.1
Donnelly, P.2
-
28
-
-
0035071957
-
A new statistical method for haplotype reconstruction from population data
-
Stephens, M., Smith, N.J., and Donnelly, P. (2001). A new statistical method for haplotype reconstruction from population data Am J. Hum. Genet. 68:978-989
-
(2001)
Am J. Hum. Genet.
, vol.68
, pp. 978-989
-
-
Stephens, M.1
Smith, N.J.2
Donnelly, P.3
-
30
-
-
1642313766
-
A new algorithm for haplotype-based association analysis: The stochastic-EM algorithm
-
Tregouet, D.A., Escolano, S., Tiret, L. et al. (2004). A new algorithm for haplotype-based association analysis: The stochastic-EM algorithm. Ann. Hum. Genet. 68:165-177
-
(2004)
Ann. Hum. Genet.
, vol.68
, pp. 165-177
-
-
Tregouet, D.A.1
Escolano, S.2
Tiret, L.3
-
31
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D., Myers, E.W et al. (2001). The sequence of the human genome. Science 291:1304-1351
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
32
-
-
0141617556
-
Haplotype inference by maximum parsimony
-
Wang, L. and Xu, Y. (2003). Haplotype inference by maximum parsimony. Bioinformatics 19:1773-1780
-
(2003)
Bioinformatics
, vol.19
, pp. 1773-1780
-
-
Wang, L.1
Xu, Y.2
-
33
-
-
0033927437
-
Direct haplotyping of kilobase-size DNA using carbon nanotube probes
-
Woolley, A.T., Guillemette, C., Li-Cheung, C., Housman, D.E., and Lieber, G.M. (2000) Direct haplotyping of kilobase-size DNA using carbon nanotube probes. Nat. Biotechnol. 18:760-763
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 760-763
-
-
Woolley, A.T.1
Guillemette, C.2
Li-Cheung, C.3
Housman, D.E.4
Lieber, G.M.5
-
35
-
-
33746388765
-
Fundamentals of fungal molecular population genetic analysis
-
Xu, J. (2006). Fundamentals offungal molecular population genetic analysis. Curr. Issues Mol. Biol. 8:75-90
-
(2006)
Curr. Issues Mol. Biol.
, vol.8
, pp. 75-90
-
-
Xu, J.1
-
36
-
-
0041923940
-
Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans
-
Xu, J., and Mitchell, T.G. (2003). Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans. Microbiology 149:2147-2154
-
(2003)
Microbiology
, vol.149
, pp. 2147-2154
-
-
Xu, J.1
Mitchell, T.G.2
-
37
-
-
0033675677
-
Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans
-
Xu, J., Vilgalys, R., and Mitchell, T.G. (2000). Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol. Ecol. 9:1471-1482
-
(2000)
Mol. Ecol.
, vol.9
, pp. 1471-1482
-
-
Xu, J.1
Vilgalys, R.2
Mitchell, T.G.3
-
38
-
-
0036146654
-
Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD
-
Xu, J., Luo, G., Vilgalys, R., Brandt, M.E., and Mitchell, T.G. (2002). Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology 148:203-212
-
(2002)
Microbiology
, vol.148
, pp. 203-212
-
-
Xu, J.1
Luo, G.2
Vilgalys, R.3
Brandt, M.E.4
Mitchell, T.G.5
-
39
-
-
0038406155
-
A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies
-
Zhao, L.P., Li, S.S. and Khalid, N. (2003). A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies. Am. J. Hum. Genet. 72:1231-1250
-
(2003)
Am. J. Hum. Genet.
, vol.72
, pp. 1231-1250
-
-
Zhao, L.P.1
Li, S.S.2
Khalid, N.3
|