메뉴 건너뛰기




Volumn 8, Issue 2, 2006, Pages 75-90

Fundamentals of fungal molecular population genetic analyses

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBIOTIC AGENT; DNA FRAGMENT; GENOMIC DNA; MICROSATELLITE DNA; RIBOSOME RNA;

EID: 33746388765     PISSN: 14673037     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (64)

References (51)
  • 1
    • 0000266922 scopus 로고
    • A randomization test for phylogenetic information in systematic data
    • Archie, J.W. (1989). A randomization test for phylogenetic information in systematic data. Syst. Zool. 38, 239-252.
    • (1989) Syst. Zool. , vol.38 , pp. 239-252
    • Archie, J.W.1
  • 2
    • 0003447803 scopus 로고
    • San Francisco: University of California Press. 1982
    • Bell G. (1982). The Masterpiece of Nature. San Francisco: University of California Press. 1982.
    • (1982) The Masterpiece of Nature
    • Bell, G.1
  • 3
    • 0001714012 scopus 로고
    • Multilocus structure of natural populations of Hordeum spontaneum
    • Brown, A.H.D., Feldman, M.W., and Nevo, E. (1980). Multilocus structure of natural populations of Hordeum spontaneum. Genetics 96, 523-536.
    • (1980) Genetics , vol.96 , pp. 523-536
    • Brown, A.H.D.1    Feldman, M.W.2    Nevo, E.3
  • 4
    • 0000704272 scopus 로고
    • Estimation of gene flow from F-statistics
    • Cockerham, C.C., and Weir, B.S. (1993). Estimation of gene flow from F-statistics. Evolution 47, 855-863.
    • (1993) Evolution , vol.47 , pp. 855-863
    • Cockerham, C.C.1    Weir, B.S.2
  • 6
    • 0026681074 scopus 로고
    • Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data
    • Excoffier, L., Smouse, P.E., and Quattro, J.M. (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 479-491.
    • (1992) Genetics , vol.131 , pp. 479-491
    • Excoffier, L.1    Smouse, P.E.2    Quattro, J.M.3
  • 7
    • 0030248329 scopus 로고    scopus 로고
    • Use of polymorphic short and clustered coding-region microsatellites to distinguish strains of Candida albicans
    • Field, D., Eggert, L., Metzgar, D., Rose, R., and Wills, C. (1996). Use of polymorphic short and clustered coding-region microsatellites to distinguish strains of Candida albicans. FEMS Immunol. Med. Microbiol. 15, 73-79.
    • (1996) FEMS Immunol. Med. Microbiol. , vol.15 , pp. 73-79
    • Field, D.1    Eggert, L.2    Metzgar, D.3    Rose, R.4    Wills, C.5
  • 8
    • 0029894618 scopus 로고    scopus 로고
    • Karyotype instability in Cryptococcus neoformans infection
    • Fries, B.C., Chen, F.Y., Currie, B.P., and Casadevall, A. (1996). Karyotype instability in Cryptococcus neoformans infection. J. Clin. Microbiol. 34, 1531-1534.
    • (1996) J. Clin. Microbiol. , vol.34 , pp. 1531-1534
    • Fries, B.C.1    Chen, F.Y.2    Currie, B.P.3    Casadevall, A.4
  • 9
    • 0031940433 scopus 로고    scopus 로고
    • Cryptic speciation and recombination in the aflatoxin producing fungus Aspergillus flavus
    • Geiser, D.M., Pitt, J.I., and Taylor, J.W. (1998). Cryptic speciation and recombination in the aflatoxin producing fungus Aspergillus flavus. Proc. Natl. Acad. Sci. USA 95, 388-393.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 388-393
    • Geiser, D.M.1    Pitt, J.I.2    Taylor, J.W.3
  • 11
    • 0030666437 scopus 로고    scopus 로고
    • Typing of Pneumocystis carinii f. sp. hominis by single-strand conformation polymorphism of four genomic regions
    • Hauser, P.M., Francioli, P., Bille, J., Telenti, A., and Blanc, D.S. (1997). Typing of Pneumocystis carinii f. sp. hominis by single-strand conformation polymorphism of four genomic regions. J. Clin. Microbiol. 35, 3086-3091.
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 3086-3091
    • Hauser, P.M.1    Francioli, P.2    Bille, J.3    Telenti, A.4    Blanc, D.S.5
  • 13
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R.R., and Kaplan, N.L. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 14
    • 0026512283 scopus 로고
    • A statistical test for detecting geographic subdivision
    • Hudson, R.R., Boos, D.D., and Kaplan, N.L. (1992). A statistical test for detecting geographic subdivision. Mol. Biol. Evol. 9, 138-151.
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 138-151
    • Hudson, R.R.1    Boos, D.D.2    Kaplan, N.L.3
  • 15
    • 0027730149 scopus 로고
    • DNA-DNA hybridization approaches to species identification in small genome organisms
    • Kurtzman, C.P. (1993). DNA-DNA hybridization approaches to species identification in small genome organisms. Meth. Enzymol. 224, 335-348.
    • (1993) Meth. Enzymol. , vol.224 , pp. 335-348
    • Kurtzman, C.P.1
  • 16
    • 0025289181 scopus 로고
    • The analysis of population survey data on DNA sequence variation
    • Lynch, M., and Crease, T.J. (1990) The analysis of population survey data on DNA sequence variation. Mol. Biol. Evol. 7, 377-394.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 377-394
    • Lynch, M.1    Crease, T.J.2
  • 19
    • 0003900524 scopus 로고
    • The Evolution of Sex: An examination of current ideas
    • MA: Sinauer Associates, Inc
    • Michod, R.E., and Levin, B.R. (1988). The Evolution of Sex: an examination of current ideas. MA: Sinauer Associates, Inc.
    • (1988)
    • Michod, R.E.1    Levin, B.R.2
  • 21
    • 0001872764 scopus 로고    scopus 로고
    • Proteins: Isozyme electrophoresis
    • Hillis DM, Moritz C, Mable BK, editors. Sunderland, Massachusetts: Sinauer Associates
    • Murphy, R.W., Sites, J.W., Jr., Buth, D.G., and Haufler, C.H. (1996). Proteins: isozyme electrophoresis. In: Hillis DM, Moritz C, Mable BK, editors. Molecular Systematics. Sunderland, Massachusetts: Sinauer Associates, pp.51-120.
    • (1996) Molecular Systematics , pp. 51-120
    • Murphy, R.W.1    Sites Jr., J.W.2    Buth, D.G.3    Haufler, C.H.4
  • 22
    • 0006919926 scopus 로고
    • Analysis of gene diversity in subdivided populations
    • Nei, M. (1973) Analysis of gene diversity in subdivided populations. Proc. Natl. Acad. Sci. USA. 70, 3321-3323.
    • (1973) Proc. Natl. Acad. Sci. USA. , vol.70 , pp. 3321-3323
    • Nei, M.1
  • 24
    • 0032793084 scopus 로고    scopus 로고
    • A rapid method for detecting and distinguishing clinically important yeasts by heteroduplex mobility assays (HMAs)
    • Olicio, R., Almeida, C.A., and Seuanez, H.N. (1999). A rapid method for detecting and distinguishing clinically important yeasts by heteroduplex mobility assays (HMAs). Mol. Cell Probes 13, 251-255.
    • (1999) Mol. Cell Probes , vol.13 , pp. 251-255
    • Olicio, R.1    Almeida, C.A.2    Seuanez, H.N.3
  • 25
    • 0021038163 scopus 로고
    • Estimating the coancestry coefficient: Basis for a short-term genetic distance
    • Reynolds, J., Weir, B.S., and Cockerham, C.C. (1983). Estimating the coancestry coefficient: basis for a short-term genetic distance. Genetics 105, 767-779.
    • (1983) Genetics , vol.105 , pp. 767-779
    • Reynolds, J.1    Weir, B.S.2    Cockerham, C.C.3
  • 26
    • 0028816747 scopus 로고
    • A measure of population subdivision based on microsatellite allele frequencies
    • Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139, 457-462.
    • (1995) Genetics , vol.139 , pp. 457-462
    • Slatkin, M.1
  • 27
    • 0004249246 scopus 로고
    • 2nd ed., W.H. Freeman, New York
    • Sokal, R. R., and F. J. Rohlf. (1981). Biometry, 2nd ed., W.H. Freeman, New York.
    • (1981) Biometry
    • Sokal, R.R.1    Rohlf, F.J.2
  • 28
    • 0023946176 scopus 로고
    • Genotypic diversity: Estimation and prediction in samples
    • Stoddart, J.A., and Taylor, J.F. (1988). Genotypic diversity: estimation and prediction in samples. Genetics 118, 705-711.
    • (1988) Genetics , vol.118 , pp. 705-711
    • Stoddart, J.A.1    Taylor, J.F.2
  • 31
    • 0003752712 scopus 로고    scopus 로고
    • 2nd ed. Sinauer Associates, Sunderland, MA
    • Weir, B.S. (1996). Genetic Data Analysis, 2nd ed. Sinauer Associates, Sunderland, MA.
    • (1996) Genetic Data Analysis
    • Weir, B.S.1
  • 32
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir, B.S., and Cockerham, C.C. (1984). Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 33
    • 0020558165 scopus 로고
    • Multilocus genetic structure in natural populations of Escherichia coli
    • Whittam, T.S., Ochman, H., and Selander, R.K. (1983). Multilocus genetic structure in natural populations of Escherichia coli. Proc. Natl. Acad. Sci. USA 80, 1751-1755.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 1751-1755
    • Whittam, T.S.1    Ochman, H.2    Selander, R.K.3
  • 37
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright, S. (1943). Isolation by distance. Genetics 28, 114-138.
    • (1943) Genetics , vol.28 , pp. 114-138
    • Wright, S.1
  • 38
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S. (1951). The genetical structure of populations. Ann. Eugen. 15, 323-354.
    • (1951) Ann. Eugen. , vol.15 , pp. 323-354
    • Wright, S.1
  • 39
    • 0036942691 scopus 로고    scopus 로고
    • Mitochondrial DNA polymorphisms in the human pathogenic fungus Cryptococcus neoformans
    • Xu, J. (2002). Mitochondrial DNA polymorphisms in the human pathogenic fungus Cryptococcus neoformans. Curr. Genet. 41, 43-47.
    • (2002) Curr. Genet. , vol.41 , pp. 43-47
    • Xu, J.1
  • 40
    • 11144346723 scopus 로고    scopus 로고
    • The prevalence and evolution of sex in microorganisms
    • Xu, J. (2004). The prevalence and evolution of sex in microorganisms. Genome 47, 775-780.
    • (2004) Genome , vol.47 , pp. 775-780
    • Xu, J.1
  • 41
    • 0032727706 scopus 로고    scopus 로고
    • Species and genotypic diversities and similarities of pathogenic yeasts colonizing women
    • Xu, J., Boyd, C.M., Livingstone, E., Meyer, W., Madden, J.F., and Mitchell, T.G. (1999a). Species and genotypic diversities and similarities of pathogenic yeasts colonizing women. J. Clin. Microbiol. 37, 3835-3843.
    • (1999) J. Clin. Microbiol. , vol.37 , pp. 3835-3843
    • Xu, J.1    Boyd, C.M.2    Livingstone, E.3    Meyer, W.4    Madden, J.F.5    Mitchell, T.G.6
  • 42
    • 0031469472 scopus 로고    scopus 로고
    • The genetic structure of natural populations of Agaricus bisporus, the commercial mushroom
    • Xu, J., Kerrigan, R. W., Callac, R, Horgen, P.A., and Anderson, J.B. (1997). The genetic structure of natural populations of Agaricus bisporus, the commercial mushroom. J. Heredity 88, 482-494.
    • (1997) J. Heredity , vol.88 , pp. 482-494
    • Xu, J.1    Kerrigan, R.W.2    Callac, R.3    Horgen, P.A.4    Anderson, J.B.5
  • 43
    • 0031906331 scopus 로고    scopus 로고
    • Mitochondrial DNA variation in natural populations of the mushroom Agaricus bisporus
    • Xu, J., Kerrigan, R.W., Sonnenberg, A.S., Callac, P., Horgen, P.A., and Anderson, J.B. (1998). Mitochondrial DNA variation in natural populations of the mushroom Agaricus bisporus. Mol. Ecol. 7, 19-33.
    • (1998) Mol. Ecol. , vol.7 , pp. 19-33
    • Xu, J.1    Kerrigan, R.W.2    Sonnenberg, A.S.3    Callac, P.4    Horgen, P.A.5    Anderson, J.B.6
  • 44
    • 0036146654 scopus 로고    scopus 로고
    • Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD
    • Xu, J., Luo, G., Vilgalys, R., Brandt, M.E., and Mitchell, T.G. (2002). Multiple origins of hybrid strains of Cryptococcus neoformans with serotype AD. Microbiology 148, 203-212.
    • (2002) Microbiology , vol.148 , pp. 203-212
    • Xu, J.1    Luo, G.2    Vilgalys, R.3    Brandt, M.E.4    Mitchell, T.G.5
  • 45
    • 0042100771 scopus 로고    scopus 로고
    • Population genetic analysis of medical fungi
    • Chapter 13. (2nd edition). Editor Dexter H. Howard. Marcel Dekker, Inc. New York
    • Xu, J. and Mitchell, T.G. (2003a). Population genetic analysis of medical fungi. Chapter 13. Pp. 703-722. In Fungi Pathogenic to Human and Animals (2nd edition). Editor Dexter H. Howard. Marcel Dekker, Inc. New York.
    • (2003) Fungi Pathogenic to Human and Animals , pp. 703-722
    • Xu, J.1    Mitchell, T.G.2
  • 46
    • 0041923940 scopus 로고    scopus 로고
    • Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans
    • Xu, J., and Mitchell, T.G. (2003b). Comparative gene genealogical analyses of strains of serotype AD identify recombination in populations of serotypes A and D in the human pathogenic yeast Cryptococcus neoformans. Microbiology 149, 2147-2154.
    • (2003) Microbiology , vol.149 , pp. 2147-2154
    • Xu, J.1    Mitchell, T.G.2
  • 47
    • 6544295270 scopus 로고    scopus 로고
    • PCR-restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candida albicans
    • Xu, J., Mitchell, T.G., and Vilgalys, R.J. (1999b). PCR-restriction fragment length polymorphism (RFLP) analyses reveal both extensive clonality and local genetic differences in Candida albicans. Mol. Ecol. 8, 59-73.
    • (1999) Mol. Ecol. , vol.8 , pp. 59-73
    • Xu, J.1    Mitchell, T.G.2    Vilgalys, R.J.3
  • 48
    • 0034007682 scopus 로고    scopus 로고
    • Clonal and spontaneous origins of fluconazole resistance in Candida albicans
    • Xu, J., Ramos, A., Vilgalys, R., and Mitchell, T.G. (2000a). Clonal and spontaneous origins of fluconazole resistance in Candida albicans. J. Clin. Microbiol. 38, 1214-1220.
    • (2000) J. Clin. Microbiol. , vol.38 , pp. 1214-1220
    • Xu, J.1    Ramos, A.2    Vilgalys, R.3    Mitchell, T.G.4
  • 49
    • 0033675677 scopus 로고    scopus 로고
    • Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans
    • Xu, J., Vilgalys, R.J., and Mitchell, T.G. (2000b). Multiple gene genealogies reveal recent dispersion and hybridization in the human pathogenic fungus Cryptococcus neoformans. Mol. Ecol. 9, 1471-1481.
    • (2000) Mol. Ecol. , vol.9 , pp. 1471-1481
    • Xu, J.1    Vilgalys, R.J.2    Mitchell, T.G.3
  • 50
    • 0029185482 scopus 로고
    • Exact tests for association between alleles at arbitrary numbers of loci
    • Zaykin, D., Zhivotovsky, L., and Weir, B.S. (1995). Exact tests for association between alleles at arbitrary numbers of loci. Genetica 96, 169-178.
    • (1995) Genetica , vol.96 , pp. 169-178
    • Zaykin, D.1    Zhivotovsky, L.2    Weir, B.S.3
  • 51
    • 0028838341 scopus 로고
    • Chromosome-length polymorphism in fungi
    • Zolan, M.E. (1995). Chromosome-length polymorphism in fungi. Microbiol. Rev. 59, 686-698.
    • (1995) Microbiol. Rev. , vol.59 , pp. 686-698
    • Zolan, M.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.