메뉴 건너뛰기




Volumn 47, Issue 7, 2006, Pages 1583-1587

Genome-wide identification of peroxisome proliferator response elements using integrated computational genomics

Author keywords

Conserved elements; PACM; Peroxisome proliferator activated receptor; Target genes

Indexed keywords

MITOGEN ACTIVATED PROTEIN KINASE; PEROXISOME PROLIFERATOR; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR AGONIST; PEROXISOME PROLIFERATOR RESPONSE ELEMENT; UNCLASSIFIED DRUG;

EID: 33746080426     PISSN: 00222275     EISSN: 15397262     Source Type: Journal    
DOI: 10.1194/jlr.M500504-JLR200     Document Type: Article
Times cited : (115)

References (21)
  • 2
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature. 409: 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 3
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • Mouse Genome Sequencing Consortium. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature. 420: 520-562.
    • (2002) Nature , vol.420 , pp. 520-562
  • 4
    • 1842684068 scopus 로고    scopus 로고
    • Genome sequence of the brown Norway rat yields insights into mammalian evolution
    • Rat Genome Sequencing Project Consortium. 2004. Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature. 428: 493-521.
    • (2004) Nature , vol.428 , pp. 493-521
  • 5
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz, G. Z., and G. D. Stormo. 1999. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics. 15: 563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 6
    • 2342445980 scopus 로고    scopus 로고
    • Modeling within-motif dependence for transcription factor binding site predictions
    • Zhou, Q., and J. S. Liu. 2004. Modeling within-motif dependence for transcription factor binding site predictions. Bioinformatics. 20: 909-916.
    • (2004) Bioinformatics , vol.20 , pp. 909-916
    • Zhou, Q.1    Liu, J.S.2
  • 7
    • 10244251720 scopus 로고    scopus 로고
    • Variance-modeled posterior inference of microarray data: Detecting gene-expression changes in 3T3-L1 adipocytes
    • Hsiao, A., D. S. Worrall, J. M. Olefsky, and S. Subramaniam. 2004. Variance-modeled posterior inference of microarray data: detecting gene-expression changes in 3T3-L1 adipocytes. Bioinformatics. 20: 3108-3127.
    • (2004) Bioinformatics , vol.20 , pp. 3108-3127
    • Hsiao, A.1    Worrall, D.S.2    Olefsky, J.M.3    Subramaniam, S.4
  • 10
    • 0345871947 scopus 로고    scopus 로고
    • Liver gene expression in rats in response to the peroxisome proliferator-activated receptor-alpha agonist ciprofibrate
    • Yadetie, F., A. Laegreid, I. Bakke, W. Kusnierczyk, J. Komorowski, H. L. Waldum, and A. K. Sandvik. 2003. Liver gene expression in rats in response to the peroxisome proliferator-activated receptor-alpha agonist ciprofibrate. Physiol. Genomics. 15: 9-19.
    • (2003) Physiol. Genomics. , vol.15 , pp. 9-19
    • Yadetie, F.1    Laegreid, A.2    Bakke, I.3    Kusnierczyk, W.4    Komorowski, J.5    Waldum, H.L.6    Sandvik, A.K.7
  • 11
    • 0036289332 scopus 로고    scopus 로고
    • Microarray analysis of gene expression changes in mouse liver induced by peroxisome proliferator-activated receptor alpha agonists
    • Yamazaki, K., J. Kuromitsu, and I. Tanaka. 2002. Microarray analysis of gene expression changes in mouse liver induced by peroxisome proliferator-activated receptor alpha agonists. Biochem. Biophys. Res. Commun. 290: 1114-1122.
    • (2002) Biochem. Biophys. Res. Commun. , vol.290 , pp. 1114-1122
    • Yamazaki, K.1    Kuromitsu, J.2    Tanaka, I.3
  • 12
    • 10044278147 scopus 로고    scopus 로고
    • Identification of promethin and PGLP as two novel up-regulated genes in PPARgamma1-induced adipogenic mouse liver
    • Yu, S., N. Viswakarma, S. K. Batra, M. Sambasiva Rao, and J. K. Reddy. 2004. Identification of promethin and PGLP as two novel up-regulated genes in PPARgamma1-induced adipogenic mouse liver. Biochimie. 86: 743-761.
    • (2004) Biochimie , vol.86 , pp. 743-761
    • Yu, S.1    Viswakarma, N.2    Batra, S.K.3    Sambasiva Rao, M.4    Reddy, J.K.5
  • 13
    • 0037263812 scopus 로고    scopus 로고
    • MAPPFinder: Using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
    • Doniger, S. W., N. Salomonis, K. D. Dahlquist, K. Vranizan, S. C. Lawlor, and B. R. Conklin. 2003. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 4: R7.
    • (2003) Genome Biol. , vol.4
    • Doniger, S.W.1    Salomonis, N.2    Dahlquist, K.D.3    Vranizan, K.4    Lawlor, S.C.5    Conklin, B.R.6
  • 14
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: A database on transcription factors and their DNA binding sites
    • Wingender, E., P. Dietze, H. Karas, and R. Knuppel. 1996. TRANSFAC: a database on transcription factors and their DNA binding sites. Nucleic Acids Res. 24: 238-241.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 238-241
    • Wingender, E.1    Dietze, P.2    Karas, H.3    Knuppel, R.4
  • 18
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey, T. L., and C. Elkan. 1994. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2: 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol. , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 19
    • 0030818756 scopus 로고    scopus 로고
    • Polarity and specific sequence requirements of peroxisome proliferator-activated receptor (PPAR)/retinoid X receptor heterodimer binding to DNA. A functional analysis of the malic enzyme gene PPAR response element
    • IJpenberg, A., E. Jeannin, W. Wahli, and B. Desvergne. 1997. Polarity and specific sequence requirements of peroxisome proliferator-activated receptor (PPAR)/retinoid X receptor heterodimer binding to DNA. A functional analysis of the malic enzyme gene PPAR response element. J. Biol. Chem. 272: 20108-20117.
    • (1997) J. Biol. Chem. , vol.272 , pp. 20108-20117
    • IJpenberg, A.1    Jeannin, E.2    Wahli, W.3    Desvergne, B.4
  • 20
    • 0030771852 scopus 로고    scopus 로고
    • DNA binding properties of peroxisome proliferator-activated receptor subtypes on various natural peroxisome proliferator response elements. Importance of the 59-flanking region
    • Juge-Aubry, C., A. Pernin, T. Favez, A. G. Burger, W. Wahli, C. A. Meier, and B. Desvergne. 1997. DNA binding properties of peroxisome proliferator-activated receptor subtypes on various natural peroxisome proliferator response elements. Importance of the 59-flanking region. J. Biol. Chem. 272: 25252-25259.
    • (1997) J. Biol. Chem. , vol.272 , pp. 25252-25259
    • Juge-Aubry, C.1    Pernin, A.2    Favez, T.3    Burger, A.G.4    Wahli, W.5    Meier, C.A.6    Desvergne, B.7
  • 21
    • 0032566007 scopus 로고    scopus 로고
    • Subtype- and response element-dependent differences in transactivation by peroxisome proliferator-activated receptors alpha and gamma
    • Kassam, A., J. Hunter, R. A. Rachubinski, and J. P. Capone. 1998. Subtype- and response element-dependent differences in transactivation by peroxisome proliferator-activated receptors alpha and gamma. Mol. Cell. Endocrinol. 141: 153-162.
    • (1998) Mol. Cell. Endocrinol. , vol.141 , pp. 153-162
    • Kassam, A.1    Hunter, J.2    Rachubinski, R.A.3    Capone, J.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.