A cellular retinoic acid-binding protein from zebrafish (Danio rerio): CDNA sequence, phylogenetic analysis, mRNA expression, and gene linkage mapping

Gene

Volumn 311, Issue 1-2, 2003, Pages 119-128

  Sharma, Mukesh K ^a   Denovan Wright, Eileen M ^b   Boudreau, Mary Ellen R ^a   Wright, Jonathan M ^a  

^a DALHOUSIE UNIVERSITY   (Canada)

^b DALHOUSIE UNIVERSITY   (Canada)

Author keywords

Cellular retinoic acid binding protein; LN54; Radiation hybrid mapping; Reverse transcription polymerase chain reaction; Syntenic relationship

Indexed keywords

AMINO ACID; BINDING PROTEIN; CELL PROTEIN; COMPLEMENTARY DNA; FATTY ACID BINDING PROTEIN; LIPID BINDING PROTEIN; MESSENGER RNA; OLIGONUCLEOTIDE; POLYPEPTIDE; PROTEIN SUBUNIT; RETINOIC ACID BINDING PROTEIN; RETINOIC ACID BINDING PROTEIN 2A; RETINOIC ACID BINDING PROTEIN 2B; RETINOL BINDING PROTEIN; RNA; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ARTICLE; BRAIN; CALCULATION; CHROMOSOME 1; CONTROLLED STUDY; DEVELOPMENTAL STAGE; DNA SEQUENCE; FERTILIZATION; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC CODE; GENETIC LINKAGE; GENOME; INTESTINE; ISOELECTRIC POINT; KIDNEY; LIVER; MOLECULAR CLONING; MULTIGENE FAMILY; MUSCLE; NONHUMAN; NUCLEOTIDE SEQUENCE; OVARY; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN FAMILY; PROTEIN LOCALIZATION; PUFFER FISH; QUANTITATIVE GENETICS; RADIATION HYBRID MAPPING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; SKIN; SPECIES; TESTIS; ZEBRA FISH;

DANIO; DANIO RERIO; TETRAODONTIDAE;

EID: 0038647967     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(03)00580-8     Document Type: Article

References (33)

1. Aparicio S., et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science. 297:2002;1301-1310.
2. Åström A., Tavakkol A., Pettersson U., Cromie M., Elder J.T., Voorhees J.J. Molecular cloning of two human cellular retinoic acid-binding proteins (CRABP). Retinoic acid-induced expression of CRABP-II but not CRABP-I in adult human skin in vivo and in skin fibroblasts in vitro. J. Biol. Chem. 266:1991;17662-17666.
3. Bernlohr D.A., Simpson M.A., Hertzel A.V., Banaszak L.J. Intracellular lipid-binding proteins and their genes. Annu. Rev. Nutr. 17:1997;277-303.
4. Bucco R.A., Zheng W.L., Wardlaw S.A., Davis J.T., Sierra-Rivera E., Osteen K.G., Melner M.H., Kakkad B.P., Ong D.E. Regulation and localization of cellular retinol-binding protein, retinol-binding protein, cellular retinoic acid-binding protein (CRABP), and CRABP II in the uterus of the pseudopregnant rat. Endocrinology. 137:1996;3111-3122.
5. Cameron M.C., Denovan-Wright E.M., Sharma M.K., Wright J.M. Cellular retinol-binding protein type II (CRBPII) in adult zebrafish (Danio rerio). Eur. J. Biochem. 269:2002;4685-4692.
6. Campbell N.A., Reece J.B., Mitchell L.G. Biology. 5th Edition:1999;Addison Wesley Longman, Inc, California.
7. Chen X., Tordova M., Gilliland G.L., Wang L., Li Y., Yan H., Ji X. Crystal structure of apo-cellular retinoic acid-binding protein type II (R111M) suggests a mechanism of ligand entry. J. Mol. Biol. 278:1998;641-653.
8. Dekker E.-J., Vaessen M.-J., van den Berg C., Timmermans A., Godsave S., Holling T., Nieuwkoop P., Geurts van Kessel A., Durston A. Overexpression of a cellular retinoic acid binding protein (xCRABP) causes anteroposterior defects in developing Xenopus embryos. Development. 120:1994;973-985.
9. Felsenstein J. PHYLIP (phylogeny inference package). Version 3.5c. 1995;Distributed by the author, Department of Genetics, University of Washington, Seattle.
10. Fogh K., Voorhees J.J., Åström A. Expression, purification, and binding properties of human cellular retinoic acid binding protein types I and II. Arch. Biochem. Biophys. 300:1993;751-755.
11. Giguère V., Lyn S., Yip P., Siu C.-H., Amin S. Molecular cloning of cDNA encoding a second cellular retinoic acid-binding protein. Proc. Natl. Acad. Sci. USA. 87:1990;6233-6237.
12. Gorry P., Lufkin T., Dierich A., Rochette-Egly C., Décimo D., Dollé P., Mark M., Durand B., Chambon P. The cellular retinoic acid binding protein I is dispensable. Proc. Natl. Acad. Sci. USA. 91:1994;9032-9036.
13. Hamilton L.C., Wright J.M. Isolation of complementary DNAs coding for a receptor for activated c kinase (RACK) from zebrafish (Danio rerio) and tilapia (Oreochromis niloticus): constitutive developmental and tissue expression. Mar. Biotechnol. 1:1999;279-285.
14. Ho L., Mercola M., Gudas L.J. Xenopus laevis cellular retinoic acid-binding protein: temporal and spatial expression pattern during early embryogenesis. Mech. Dev. 47:1994;53-64.
15. Hukriede N.A., Joly L., Tsang M., Miles J., Tellis P., Epstein J.A., Barbazuk W.B., Li F.N., Paw B., Postlethwait J.H., Hudson T.J., Zon L.I., McPherson J.D., Chevrette M., Dawid I.B., Johnson S.L., Ekker M. Radiation hybrid mapping of the zebrafish genome. Proc. Natl. Acad. Sci. USA. 96:1999;9745-9750.
16. Kastner P., Mark M., Chambon P. Non-steroid nuclear receptors: what are genetic studies telling us about their role in real life? Cell. 83:1995;859-869.
17. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., Schilling T.F. Stages of embryonic development of the zebrafish. Dev. Dyn. 203:1995;253-310.
18. Kleinjan D.A., Dekker S., Guy J.A., Grosveld G. Cloning and sequencing of the CRABP-I locus from chicken and pufferfish: analysis of the promoter regions in transgenic mice. Transgenic Res. 7:1998;85-94.
19. Lampron C., Rochette-Egly C., Gorry P., Dollè P., Mark M., Lufkin T., LeMeur M., Chambon P. Mice deficient in cellular retinoic acid binding protein II (CRABPII) or in both CRABPI and CRABPII are essentially normal. Development. 121:1995;539-548.
20. Mangelsdorf D.J., Umesono K., Evans R.M. The retinoid receptors. Sporn M.B., Roberts A.B., Goodman D.S. The Retinoids: Biology, Chemistry and Medicine. 2nd Edition:1994;319-349 Raven Press, New York.
21. Mansfield S.G., Cammer S., Alexander S.C., Muehleisen D.P., Gray R.S., Tropsha A., Bollenbacher W.E. Molecular cloning and characterization of an invertebrate cellular retinoic acid binding protein. Proc. Natl. Acad. Sci. USA. 95:1998;6825-6830.
22. Ong D.E., Newcomer M.E., Chytil F. Cellular retinoid-binding proteins. Sporn M.B., Roberts A.B., Goodman D.S. The Retinoids: Biology, Chemistry and Medicine. 2nd Edition:1994;283-317 Raven Press, New York.
23. Pravenec M., Křen V., Wang J.-M., Kurtz T.W. Linkage mapping of the cellular retinoic acid-binding protein 1 (Crabp1) gene to rat chromosome 8. Mamm. Genome. 8:1997;455-456.
24. Schleicher C.H., Córdoba O.L., Santomé J.A., Dell'Angelica E.C. Molecular evolution of the multigene family of intracellular lipid-binding proteins. Biochem. Mol. Biol. Int. 36:1995;1117-1125.
25. Shi J., Blundell T.L., Mizuguchi K. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J. Mol. Biol. 310:2001;243-257.
26. Strimmer K., von Haeseler A. Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13:1996;964-969.
27. Swofford D.L. PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. 2002;Sinauer Associates, Sunderland, MA.
28. Tavakkol A., Griffiths C.E., Keane K.M., Palmer R.D., Voorhees J.J. Cellular localization of mRNA for cellular retinoic acid-binding protein II and nuclear retinoic acid receptor-gamma 1 in retinoic acid-treated human skin. J. Invest. Dermatol. 99:1992;146-150.
29. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
31. West K.P. Jr. Vitamin A deficiency: its epidemiology and relation to child mortality and morbidity. Blomhoff R. Vitamin A in Health and Diseases. 1994;585-614 Marcel Dekker Inc, New York.
32. Westerfield M. The Zebrafish Book: a Guide for the Laboratory Use of Zebrafish (Danio rerio). 3rd Edition:1995;University of Oregon Press, Eugene, USA.
33. Woods I.G., Kelly P.D., Chu F., Ngo-Hazelett P., Yan Y.-L., Huang H., Postlethwait J.H., Talbot W.S. A comparative map of the zebrafish genome. Genome Res. 10:2000;1903-1914.