Visualization of Rad54, a Chromatin Remodeling Protein, Translocating on Single DNA Molecules

Molecular Cell

Volumn 23, Issue 1, 2006, Pages 143-148

  Amitani, Ichiro ^a   Baskin, Ronald J ^a   Kowalczykowski, Stephen C ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

DNA

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; DOUBLE STRANDED DNA; RAD54 PROTEIN;

ARTICLE; CONCENTRATION (PARAMETERS); NONHUMAN; PROTEIN BINDING; VELOCITY;

ADENOSINE TRIPHOSPHATE; CHROMATIN; CHROMATIN ASSEMBLY AND DISASSEMBLY; DIAGNOSTIC IMAGING; DNA; DNA-BINDING PROTEINS; FLUORESCEIN-5-ISOTHIOCYANATE; FLUORESCENT DYES; PROTEIN TRANSPORT; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TIME FACTORS;

EID: 33745498749     PISSN: 10972765     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.molcel.2006.05.009     Document Type: Article

References (31)

1. Alexeev A., Mazin A., and Kowalczykowski S.C. Rad54 protein possesses chromatin-remodeling activity stimulated by the Rad51-ssDNA nucleoprotein filament. Nat. Struct. Biol. 10 (2003) 182-186
2. Alexiadis V., and Kadonaga J.T. Strand pairing by Rad54 and Rad51 is enhanced by chromatin. Genes Dev. 16 (2002) 2767-2771
3. Bianco P.R., Brewer L.R., Corzett M., Balhorn R., Yeh Y., Kowalczykowski S.C., and Baskin R.J. Processive translocation and DNA unwinding by individual RecBCD enzyme molecules. Nature 409 (2001) 374-378
4. Brower-Toland B.D., Smith C.L., Yeh R.C., Lis J.T., Peterson C.L., and Wang M.D. Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA. Proc. Natl. Acad. Sci. USA 99 (2002) 1960-1965
5. Cui Y., and Bustamante C. Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure. Proc. Natl. Acad. Sci. USA 97 (2000) 127-132
6. Durr H., Korner C., Muller M., Hickmann V., and Hopfner K.P. X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA. Cell 121 (2005) 363-373
7. Eisen J.A., Sweder K.S., and Hanawalt P.C. Evolution of the SNF2 family of proteins: subfamilies with distinct sequences and functions. Nucleic Acids Res. 23 (1995) 2715-2723
8. Handa N., Bianco P.R., Baskin R.J., and Kowalczykowski S.C. Direct visualization of RecBCD movement reveals cotranslocation of the RecD motor after χ recognition. Mol. Cell 17 (2005) 745-750
9. Jaskelioff M., Van Komen S., Krebs J.E., Sung P., and Peterson C.L. Rad54p is a chromatin remodeling enzyme required for heteroduplex DNA joint formation with chromatin. J. Biol. Chem. 278 (2003) 9212-9218
10. Kiianitsa K., Solinger J.A., and Heyer W.-D. Terminal association of the Rad54 protein with the Rad51-dsDNA filament. Proc. Natl. Acad. Sci. USA (2006) 10.1073/pnas.0604240103 Published online June 19, 2006
11. Kulic I.M., and Schiessel H. Chromatin dynamics: nucleosomes go mobile through twist defects. Phys. Rev. Lett. 91 (2003) 148103
12. Mazin A.V., Bornarth C.J., Solinger J.A., Heyer W.D., and Kowalczykowski S.C. Rad54 protein is targeted to pairing loci by the Rad51 nucleoprotein filament. Mol. Cell 6 (2000) 583-592
13. Mazin A.V., Alexeev A.A., and Kowalczykowski S.C. A novel function of Rad54 protein. Stabilization of the Rad51 nucleoprotein filament. J. Biol. Chem. 278 (2003) 14029-14036
14. McClure W.R., and Chow Y. The kinetics and processivity of nucleic acid polymerases. Methods Enzymol. 64 (1980) 277-297
15. Petukhova G., Stratton S., and Sung P. Catalysis of homologous DNA pairing by yeast Rad51 and Rad54 proteins. Nature 393 (1998) 91-94
16. Petukhova G., Van Komen S., Vergano S., Klein H., and Sung P. Yeast Rad54 promotes Rad51-dependent homologous DNA pairing via ATP hydrolysis-driven change in DNA double helix conformation. J. Biol. Chem. 274 (1999) 29453-29462
17. Ristic D., Wyman C., Paulusma C., and Kanaar R. The architecture of the human Rad54-DNA complex provides evidence for protein translocation along DNA. Proc. Natl. Acad. Sci. USA 98 (2001) 8454-8460
18. Roman L.J., Eggleston A.K., and Kowalczykowski S.C. Processivity of the DNA helicase activity of Escherichia coli recBCD enzyme. J. Biol. Chem. 267 (1992) 4207-4214
19. Smith D.E., Tans S.J., Smith S.B., Grimes S., Anderson D.L., and Bustamante C. The bacteriophage straight φ{symbol}29 portal motor can package DNA against a large internal force. Nature 413 (2001) 748-752
20. Smith S.B., Cui Y., and Bustamante C. Overstretching B-DNA: the elastic response of individual double- stranded and single-stranded DNA molecules. Science 271 (1996) 795-799
21. Solinger J.A., and Heyer W.D. Rad54 protein stimulates the postsynaptic phase of Rad51 protein-mediated DNA strand exchange. Proc. Natl. Acad. Sci. USA 98 (2001) 8447-8453
22. Solinger J.A., Lutz G., Sugiyama T., Kowalczykowski S.C., and Heyer W.D. Rad54 protein stimulates heteroduplex DNA formation in the synaptic phase of DNA strand exchange via specific interactions with the presynaptic Rad51 nucleoprotein filament. J. Mol. Biol. 307 (2001) 1207-1221
23. Solinger J.A., Kiianitsa K., and Heyer W.D. Rad54, a Swi2/Snf2-like recombinational repair protein, disassembles Rad51:dsDNA filaments. Mol. Cell 10 (2002) 1175-1188
24. Spies M., Bianco P.R., Dillingham M.S., Handa N., Baskin R.J., and Kowalczykowski S.C. A molecular throttle: the recombination hotspot χ controls DNA translocation by the RecBCD helicase. Cell 114 (2003) 647-654
25. Swagemakers S.M., Essers J., de Wit J., Hoeijmakers J.H., and Kanaar R. The human RAD54 recombinational DNA repair protein is a double-stranded DNA-dependent ATPase. J. Biol. Chem. 273 (1998) 28292-28297
26. Symington L.S. Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair. Microbiol. Mol. Biol. Rev. 66 (2002) 630-670
27. Tan T.L., Essers J., Citterio E., Swagemakers S.M., de Wit J., Benson F.E., Hoeijmakers J.H., and Kanaar R. Mouse Rad54 affects DNA conformation and DNA-damage-induced Rad51 foci formation. Curr. Biol. 9 (1999) 325-328
28. Thoma N.H., Czyzewski B.K., Alexeev A.A., Mazin A.V., Kowalczykowski S.C., and Pavletich N.P. Structure of the SWI2/SNF2 chromatin-remodeling domain of eukaryotic Rad54. Nat. Struct. Mol. Biol. 12 (2005) 350-356
29. von Hippel P.H., Fairfield F.R., and Dolejsi M.K. On the processivity of polymerases. Ann. N Y Acad. Sci. 726 (1994) 118-131
30. Wang M.D., Schnitzer M.J., Yin H., Landick R., Gelles J., and Block S.M. Force and velocity measured for single molecules of RNA polymerase. Science 282 (1998) 902-907
31. Wolner B., and Peterson C.L. ATP-dependent and ATP-independent roles for the Rad54 chromatin remodeling enzyme during recombinational repair of a DNA double strand break. J. Biol. Chem. 280 (2005) 10855-10860