Bounded search for de novo identification of degenerate cis-regulatory elements

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Carlson, Jonathan M ^a   Chakravarty, Arijit ^b   Khetani, Radhika S ^c   Gross, Robert H ^c  

^a University of Washington   (United States)

^b MILLENNIUM PHARMACEUTICALS INC   (United States)

^c Dartmouth College   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CIS-REGULATORY ELEMENTS; CO-REGULATED GENES; INDEPENDENCE ASSUMPTION; JAVA IMPLEMENTATION; MECHANISM OF ACTION; PERFORMANCE COMPARISON; STATISTICAL MEASURES; STATISTICAL SIGNIFICANCE;

ITERATIVE METHODS; PRISMS;

BINDING SITES;

CIS ACTING ELEMENT; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR STB1; UNCLASSIFIED DRUG; PROTEIN; PROTEIN BINDING;

ARTICLE; BINDING SITE; COMPUTER PROGRAM; CONSENSUS SEQUENCE; CONTROLLED STUDY; GENETIC ALGORITHM; INTERMETHOD COMPARISON; NONHUMAN; PERFORMANCE; PREDICTION; PROTEIN BINDING; PROTEIN MOTIF; REGULON; SACCHAROMYCES CEREVISIAE; STATISTICAL SIGNIFICANCE; ALGORITHM; BIOLOGICAL MODEL; CHEMISTRY; COMPUTER SIMULATION; DNA SEQUENCE; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROCEDURES; PROMOTER REGION; REGULATORY SEQUENCE; SEQUENCE ALIGNMENT; STATISTICAL MODEL;

ALGORITHMS; BASE SEQUENCE; BINDING SITES; COMPUTER SIMULATION; CONSENSUS SEQUENCE; MODELS, GENETIC; MODELS, STATISTICAL; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; PROTEIN BINDING; PROTEINS; REGULATORY ELEMENTS, TRANSCRIPTIONAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; TRANSCRIPTION FACTORS;

EID: 33745320292     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-254     Document Type: Article

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