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Volumn , Issue , 2003, Pages 214-220

Performance comparison of algorithms for finding transcription factor binding sites

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SITES; BINS; BIOINFORMATICS; GENES; TRANSCRIPTION; TRANSCRIPTION FACTORS; YEAST;

EID: 84942591330     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBE.2003.1188949     Document Type: Conference Paper
Times cited : (15)

References (13)
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  • 4
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    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
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    • G. Z. Hertz and G. D. Stormo. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics, 15(7/8):563-577, July/August 1999.
    • (1999) Bioinformatics , vol.15 , Issue.7-8 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 6
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    • Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
    • 8 October
    • C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, and J. C. Wootton. Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science, 262:208-214, 8 October 1993.
    • (1993) Science , vol.262 , pp. 208-214
    • Lawrence, C.E.1    Altschul, S.F.2    Boguski, M.S.3    Liu, J.S.4    Neuwald, A.F.5    Wootton, J.C.6
  • 8
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    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Oct.
    • F. P. Roth, J. D. Hughes, P. W. Estep, and G. M. Church. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nature Biotechnology, 16:939-945, Oct. 1998.
    • (1998) Nature Biotechnology , vol.16 , pp. 939-945
    • Roth, F.P.1    Hughes, J.D.2    Estep, P.W.3    Church, G.M.4
  • 10
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    • Discovery of novel transcription factor binding sites by statistical over representation
    • Dec.
    • S. Sinha and M. Tompa. Discovery of novel transcription factor binding sites by statistical over representation. Nucleic Acids Research, 30(24):5549-5560, Dec. 2002.
    • (2002) Nucleic Acids Research , vol.30 , Issue.24 , pp. 5549-5560
    • Sinha, S.1    Tompa, M.2
  • 11
    • 0032483307 scopus 로고    scopus 로고
    • Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies
    • Sept. 4
    • J. van Helden, B. André, and J. Collado-Vides. Extracting regulatory sites from the upstream region of yeast genes by computational analysis of oligonucleotide frequencies. Journal of Molecular Biology, 281(5):827-842, Sept. 4, 1998.
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    • ANN-Spec: A method for discovering transcription factor binding sites with improved specificity
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    • C. T. Workman and G. D. Stormo. ANN-Spec: a method for discovering transcription factor binding sites with improved specificity. In Pacific Symposium on Biocomputing, pages 464-475, Honolulu, Hawaii, Jan. 2000.
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    • Workman, C.T.1    Stormo, G.D.2
  • 13
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    • SCPD: A promoter database of the yeast Saccharomyces cerevisiae
    • July/August
    • J. Zhu and M. Q. Zhang. SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics, 15(7/8):563-577, July/August 1999. http://cgsigma.cshl.org/jian/.
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* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.