-
3
-
-
33644761306
-
Hydrogen exchange mass spectrometry for the analysis of protein dynamics
-
Wales T.E., and Engen J.R. Hydrogen exchange mass spectrometry for the analysis of protein dynamics. Mass Spectrom. Rev. 25 (2006) 158-170
-
(2006)
Mass Spectrom. Rev.
, vol.25
, pp. 158-170
-
-
Wales, T.E.1
Engen, J.R.2
-
4
-
-
0035840988
-
Site-specific amide hydrogen/deuterium exchange in E. coli thioredoxins measured by electrospray ionization mass spectrometry
-
Kim M.Y., Maier C.S., Reed D.J., and Deinzer M.L. Site-specific amide hydrogen/deuterium exchange in E. coli thioredoxins measured by electrospray ionization mass spectrometry. J. Am. Chem. Soc. 123 (2001) 9860-9866
-
(2001)
J. Am. Chem. Soc.
, vol.123
, pp. 9860-9866
-
-
Kim, M.Y.1
Maier, C.S.2
Reed, D.J.3
Deinzer, M.L.4
-
5
-
-
0037130674
-
Factors affecting gas-phase deuterium scrambling in peptide ions and their implications for protein structure determination
-
Demmers J.A., Rijkers D.T., Haverkamp J., Killian J.A., and Heck A.J. Factors affecting gas-phase deuterium scrambling in peptide ions and their implications for protein structure determination. J. Am. Chem. Soc. 124 (2002) 11191-11198
-
(2002)
J. Am. Chem. Soc.
, vol.124
, pp. 11191-11198
-
-
Demmers, J.A.1
Rijkers, D.T.2
Haverkamp, J.3
Killian, J.A.4
Heck, A.J.5
-
6
-
-
2942650157
-
Is there hydrogen scrambling in the gas phase? Energetic and structural determinants of proton mobility within protein ions
-
Hoerner J.K., Xiao H., Dobo A., and Kaltashov I.A. Is there hydrogen scrambling in the gas phase? Energetic and structural determinants of proton mobility within protein ions. J. Am. Chem. Soc. 126 (2004) 7709-7717
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 7709-7717
-
-
Hoerner, J.K.1
Xiao, H.2
Dobo, A.3
Kaltashov, I.A.4
-
7
-
-
14744272834
-
Intramolecular migration of amide hydrogens in protonated peptides upon collisional activation
-
Jorgensen T.J., Gardsvoll H., Ploug M., and Roepstorff P. Intramolecular migration of amide hydrogens in protonated peptides upon collisional activation. J. Am. Chem. Soc. 127 (2005) 2785-2793
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 2785-2793
-
-
Jorgensen, T.J.1
Gardsvoll, H.2
Ploug, M.3
Roepstorff, P.4
-
8
-
-
0026625689
-
Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping
-
Suckau D., Mak M., and Przybylski M. Protein surface topology-probing by selective chemical modification and mass spectrometric peptide mapping. Proc. Natl. Acad. Sci. U.S.A. 89 (1992) 5630-5634
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 5630-5634
-
-
Suckau, D.1
Mak, M.2
Przybylski, M.3
-
9
-
-
0034067250
-
Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis
-
Hochleitner E.O., Borchers C., Parker C., Bienstock R.J., and Tomer K.B. Characterization of a discontinuous epitope of the human immunodeficiency virus (HIV) core protein p24 by epitope excision and differential chemical modification followed by mass spectrometric peptide mapping analysis. Protein Sci. 9 (2000) 487-496
-
(2000)
Protein Sci.
, vol.9
, pp. 487-496
-
-
Hochleitner, E.O.1
Borchers, C.2
Parker, C.3
Bienstock, R.J.4
Tomer, K.B.5
-
10
-
-
1942502825
-
A conformational change in heparan sulfate 3-O-sulfotransferase-1 is induced by binding to heparan sulfate
-
Edavettal S.C., Carrick K., Shah R.R., Pedersen L.C., Tropsha A., Pope R.M., and Liu J. A conformational change in heparan sulfate 3-O-sulfotransferase-1 is induced by binding to heparan sulfate. Biochemistry 43 (2004) 4680-4688
-
(2004)
Biochemistry
, vol.43
, pp. 4680-4688
-
-
Edavettal, S.C.1
Carrick, K.2
Shah, R.R.3
Pedersen, L.C.4
Tropsha, A.5
Pope, R.M.6
Liu, J.7
-
11
-
-
0037058982
-
Identification of specific HIV-1 reverse transcriptase contacts to the viral RNA:tRNA complex by mass spectrometry and a primary amine selective reagent
-
Kvaratskhelia M., Miller J.T., Budihas S.R., Pannell L.K., and Le Grice S.F. Identification of specific HIV-1 reverse transcriptase contacts to the viral RNA:tRNA complex by mass spectrometry and a primary amine selective reagent. Proc. Natl. Acad. Sci. U.S.A. 99 (2002) 15988-15993
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 15988-15993
-
-
Kvaratskhelia, M.1
Miller, J.T.2
Budihas, S.R.3
Pannell, L.K.4
Le Grice, S.F.5
-
12
-
-
12344283723
-
Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA
-
Shell S.M., Hess S., Kvaratskhelia M., and Zou Y. Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA. Biochemistry 44 (2005) 971-978
-
(2005)
Biochemistry
, vol.44
, pp. 971-978
-
-
Shell, S.M.1
Hess, S.2
Kvaratskhelia, M.3
Zou, Y.4
-
13
-
-
4444382102
-
Probing rhodopsin-transducin interactions by surface modification and mass spectrometry
-
Wang X., Kim S.H., Ablonczy Z., Crouch R.K., and Knapp D.R. Probing rhodopsin-transducin interactions by surface modification and mass spectrometry. Biochemistry 43 (2004) 11153-11162
-
(2004)
Biochemistry
, vol.43
, pp. 11153-11162
-
-
Wang, X.1
Kim, S.H.2
Ablonczy, Z.3
Crouch, R.K.4
Knapp, D.R.5
-
14
-
-
27944463670
-
Probing protein tertiary structure with amidination
-
Janecki D.J., Beardsley R.L., and Reilly J.P. Probing protein tertiary structure with amidination. Anal. Chem. 77 (2005) 7274-7281
-
(2005)
Anal. Chem.
, vol.77
, pp. 7274-7281
-
-
Janecki, D.J.1
Beardsley, R.L.2
Reilly, J.P.3
-
15
-
-
0031939176
-
Immunity proteins and their specificity for endonuclease colicins. Telling right from wrong in protein-protein recognition
-
Kleanthous C., Hemmings A.M., Moore G.R., and James R. Immunity proteins and their specificity for endonuclease colicins. Telling right from wrong in protein-protein recognition. Mol. Microbiol. 28 (1998) 227-233
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 227-233
-
-
Kleanthous, C.1
Hemmings, A.M.2
Moore, G.R.3
James, R.4
-
16
-
-
23944450896
-
Real-time monitoring of enzymatic DNA hydrolysis by electrospray ionization mass spectrometry
-
van den Heuvel R.H., Gato S., Versluis C., Gerbaux P., Kleanthous C., and Heck A.J. Real-time monitoring of enzymatic DNA hydrolysis by electrospray ionization mass spectrometry. Nucleic Acids Res. 33 (2005) e96
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
van den Heuvel, R.H.1
Gato, S.2
Versluis, C.3
Gerbaux, P.4
Kleanthous, C.5
Heck, A.J.6
-
17
-
-
0035478958
-
Immunity proteins. Enzyme inhibitors that avoid the active site
-
Kleanthous C., and Walker D. Immunity proteins. Enzyme inhibitors that avoid the active site. Trends Biochem. Sci. 26 (2001) 624-631
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 624-631
-
-
Kleanthous, C.1
Walker, D.2
-
18
-
-
0032512424
-
Specificity in protein-protein recognition. Conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex
-
Wallis R., Leung K.Y., Osborne M.J., James R., Moore G.R., and Kleanthous C. Specificity in protein-protein recognition. Conserved Im9 residues are the major determinants of stability in the colicin E9 DNase-Im9 complex. Biochemistry 37 (1998) 476-485
-
(1998)
Biochemistry
, vol.37
, pp. 476-485
-
-
Wallis, R.1
Leung, K.Y.2
Osborne, M.J.3
James, R.4
Moore, G.R.5
Kleanthous, C.6
-
19
-
-
0034283147
-
Specificity in protein-protein interactions. The structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
Kühlmann U.C., Pommer A.J., Moore G.R., James R., and Kleanthous C. Specificity in protein-protein interactions. The structural basis for dual recognition in endonuclease colicin-immunity protein complexes. J. Mol. Biol. 301 (2000) 1163-1178
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1163-1178
-
-
Kühlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
20
-
-
0039107950
-
Homing in on the role of transition metals in the HNH motif of colicin endonucleases
-
Pommer A.J., Kuhlmann U.C., Cooper A., Hemmings A.M., Moore G.R., James R., and Kleanthous C. Homing in on the role of transition metals in the HNH motif of colicin endonucleases. J. Biol. Chem. 274 (1999) 27153-27160
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 27153-27160
-
-
Pommer, A.J.1
Kuhlmann, U.C.2
Cooper, A.3
Hemmings, A.M.4
Moore, G.R.5
James, R.6
Kleanthous, C.7
-
21
-
-
0036589253
-
Killing of E. coli cells by E group nuclease colicins
-
James R., Penfold C.N., Moore G.R., and Kleanthous C. Killing of E. coli cells by E group nuclease colicins. Biochimie 84 381 (2002) 389
-
(2002)
Biochimie
, vol.84
, Issue.381
, pp. 389
-
-
James, R.1
Penfold, C.N.2
Moore, G.R.3
Kleanthous, C.4
-
22
-
-
0033814381
-
NMR investigation of the interaction of the inhibitor protein Im9 with its partner DNase
-
Boetzel R., Czisch M., Kaptein R., Hemmings A.M., James R., Kleanthous C., and Moore G.R. NMR investigation of the interaction of the inhibitor protein Im9 with its partner DNase. Protein Sci. 9 (2000) 1709-1718
-
(2000)
Protein Sci.
, vol.9
, pp. 1709-1718
-
-
Boetzel, R.1
Czisch, M.2
Kaptein, R.3
Hemmings, A.M.4
James, R.5
Kleanthous, C.6
Moore, G.R.7
-
23
-
-
0036084606
-
Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time-of-flight mass spectrometry
-
van den Bremer E.T., Jiskoot W., James R., Moore G.R., Kleanthous C., Heck A.J., and Maier C.S. Probing metal ion binding and conformational properties of the colicin E9 endonuclease by electrospray ionization time-of-flight mass spectrometry. Protein Sci. 11 (2002) 1738-1752
-
(2002)
Protein Sci.
, vol.11
, pp. 1738-1752
-
-
van den Bremer, E.T.1
Jiskoot, W.2
James, R.3
Moore, G.R.4
Kleanthous, C.5
Heck, A.J.6
Maier, C.S.7
-
24
-
-
0042386232
-
Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage
-
Bodnar W.M., Blackburn R.K., Krise J.M., and Moseley M.A. Exploiting the complementary nature of LC/MALDI/MS/MS and LC/ESI/MS/MS for increased proteome coverage. J. Am. Soc. Mass Spectrom. 14 (2003) 971-979
-
(2003)
J. Am. Soc. Mass Spectrom.
, vol.14
, pp. 971-979
-
-
Bodnar, W.M.1
Blackburn, R.K.2
Krise, J.M.3
Moseley, M.A.4
-
25
-
-
9144228659
-
Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Mapping the nuclear proteome of human fibroblasts
-
Malmstrom J., Larsen K., Malmstrom L., Tufvesson E., Parker K., Marchese J., Williamson B., Patterson D., Martin S., Juhasz P., Westergren-Thorsson G., and Marko-Varga G. Nanocapillary liquid chromatography interfaced to tandem matrix-assisted laser desorption/ionization and electrospray ionization-mass spectrometry. Mapping the nuclear proteome of human fibroblasts. Electrophoresis 24 (2003) 3806-3814
-
(2003)
Electrophoresis
, vol.24
, pp. 3806-3814
-
-
Malmstrom, J.1
Larsen, K.2
Malmstrom, L.3
Tufvesson, E.4
Parker, K.5
Marchese, J.6
Williamson, B.7
Patterson, D.8
Martin, S.9
Juhasz, P.10
Westergren-Thorsson, G.11
Marko-Varga, G.12
-
26
-
-
15744372814
-
Limited proteolysis combined with isotope labeling and quantitative LC-MALDI MS for monitoring protein conformational changes. A study on calcium-binding sites of cardiac troponin C
-
McDonald C., and Liang L. Limited proteolysis combined with isotope labeling and quantitative LC-MALDI MS for monitoring protein conformational changes. A study on calcium-binding sites of cardiac troponin C. Anal. Chim. Acta 534 (2005) 3-10
-
(2005)
Anal. Chim. Acta
, vol.534
, pp. 3-10
-
-
McDonald, C.1
Liang, L.2
-
27
-
-
0033565832
-
Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser K.R., Baker P., and Burlingame A.L. Role of accurate mass measurement (±10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Anal. Chem. 71 (1999) 2871-2882
-
(1999)
Anal. Chem.
, vol.71
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
28
-
-
0036829396
-
Probing lysine acetylation with a modification-specific marker ion using high-performance liquid chromatography/electrospray-mass spectrometry with collision-induced dissociation
-
Kim J.Y., Kim K.W., Kwon H.J., Lee D.W., and Yoo J.S. Probing lysine acetylation with a modification-specific marker ion using high-performance liquid chromatography/electrospray-mass spectrometry with collision-induced dissociation. Anal. Chem. 74 (2002) 5443-5449
-
(2002)
Anal. Chem.
, vol.74
, pp. 5443-5449
-
-
Kim, J.Y.1
Kim, K.W.2
Kwon, H.J.3
Lee, D.W.4
Yoo, J.S.5
-
29
-
-
0942276237
-
Differentiation between peptides containing acetylated or tri-methylated lysines by mass spectrometry. An application for determining lysine 9 acetylation and methylation of histone H3
-
Zhang K., Yau P.M., Chandrasekhar B., New R., Kondrat R., Imai B.S., and Bradbury M.E. Differentiation between peptides containing acetylated or tri-methylated lysines by mass spectrometry. An application for determining lysine 9 acetylation and methylation of histone H3. Proteomics 4 (2004) 1-10
-
(2004)
Proteomics
, vol.4
, pp. 1-10
-
-
Zhang, K.1
Yau, P.M.2
Chandrasekhar, B.3
New, R.4
Kondrat, R.5
Imai, B.S.6
Bradbury, M.E.7
-
30
-
-
3242688830
-
Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns
-
Pinkse M.W., Uitto P.M., Hilhorst M.J., Ooms B., and Heck A.J. Selective isolation at the femtomole level of phosphopeptides from proteolytic digests using 2D-NanoLC-ESI-MS/MS and titanium oxide precolumns. Anal. Chem. 76 (2004) 3935-3943
-
(2004)
Anal. Chem.
, vol.76
, pp. 3935-3943
-
-
Pinkse, M.W.1
Uitto, P.M.2
Hilhorst, M.J.3
Ooms, B.4
Heck, A.J.5
-
31
-
-
0036067603
-
Nanoscale LC-MS(n). Technical design and applications to peptide and protein analysis
-
Meiring H., van der Heeft E., ten Hove G., and de Jong A. Nanoscale LC-MS(n). Technical design and applications to peptide and protein analysis. J. Sep. Sci. 25 (2002) 557-568
-
(2002)
J. Sep. Sci.
, vol.25
, pp. 557-568
-
-
Meiring, H.1
van der Heeft, E.2
ten Hove, G.3
de Jong, A.4
-
32
-
-
0033006298
-
Structural and mechanistic basis of immunity toward endonuclease colicins
-
Kleanthous C., Kuhlmann U.C., Pommer A.J., Ferguson N., Radford S.E., Moore G.R., James R., and Hemmings A.M. Structural and mechanistic basis of immunity toward endonuclease colicins. Nat. Struct. Biol. 6 (1999) 243-252
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 243-252
-
-
Kleanthous, C.1
Kuhlmann, U.C.2
Pommer, A.J.3
Ferguson, N.4
Radford, S.E.5
Moore, G.R.6
James, R.7
Hemmings, A.M.8
-
33
-
-
0001528720
-
Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules
-
Fraczkiewicz R., and Braun W. Exact and efficient analytical calculation of the accessible surface areas and their gradients for macromolecules. J. Comput. Chem. 19 (1998) 319-333
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 319-333
-
-
Fraczkiewicz, R.1
Braun, W.2
-
34
-
-
0032111921
-
NMR detection of slow conformational dynamics in an endonuclease toxin
-
Whittaker S.B., Boetzel R., MacDonald C., Lian L.Y., Pommer A.J., Reilly A., James R., Kleanthous C., and Moore G.R. NMR detection of slow conformational dynamics in an endonuclease toxin. J. Biomol. NMR 12 (1998) 145-159
-
(1998)
J. Biomol. NMR
, vol.12
, pp. 145-159
-
-
Whittaker, S.B.1
Boetzel, R.2
MacDonald, C.3
Lian, L.Y.4
Pommer, A.J.5
Reilly, A.6
James, R.7
Kleanthous, C.8
Moore, G.R.9
-
35
-
-
0034051071
-
Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor
-
Whittaker S.B., Czisch M., Wechselberger R., Kaptein R., Hemmings A.M., James R., Kleanthous C., and Moore G.R. Slow conformational dynamics of an endonuclease persist in its complex with its natural protein inhibitor. Protein Sci. 9 (2000) 713-720
-
(2000)
Protein Sci.
, vol.9
, pp. 713-720
-
-
Whittaker, S.B.1
Czisch, M.2
Wechselberger, R.3
Kaptein, R.4
Hemmings, A.M.5
James, R.6
Kleanthous, C.7
Moore, G.R.8
-
37
-
-
1242306189
-
DNA binding and degradation by the HNH protein ColE7
-
Hsia K.C., Chak K.F., Liang P.H., Cheng Y.S., Ku W.Y., and Yuan H.S. DNA binding and degradation by the HNH protein ColE7. Structure (Camb.) 12 (2004) 205-214
-
(2004)
Structure (Camb.)
, vol.12
, pp. 205-214
-
-
Hsia, K.C.1
Chak, K.F.2
Liang, P.H.3
Cheng, Y.S.4
Ku, W.Y.5
Yuan, H.S.6
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